IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
235	 37.55	+1	300452..301375	+	307	82750012	-	SAB0249	-	hypothetical protein
236	 33.09	0	301386..302606	+	406	82750013	-	SAB0250	-	nucleoside transporter permease
237	 36.07	0	302711..304243	-	510	82750014	-	SAB0251c	-	transport protein
238	 35.15	0	304283..305164	-	293	82750015	-	SAB0252c	-	N-acetylneuraminate lyase
239	 36.66	+1	305281..306183	+	300	82750016	-	SAB0253	-	kinase
240	 33.46	0	306460..307260	-	266	82750017	-	SAB0254c	-	hypothetical protein
241	 37.67	+1	307400..308068	+	222	82750018	-	SAB0255	-	N-acetylmannosamine-6-phosphate 2-epimerase
242	 35.46	0	308198..309559	-	453	82750019	-	SAB0256c	-	hypothetical protein
243	 37.21	+1	309929..311887	+	652	82750020	geh	SAB0257	-	glycerol ester hydrolase
244	 32.01	0	311957..313162	-	401	82750021	-	SAB0258c	-	phage-related integrase
245	 27.68	-1	313262..313915	-	217	82750022	-	SAB0259c	-	hypothetical protein
246	 34.51	0	314357..314611	+	84	82750023	-	SAB0260	-	phage-like protein
247	 34.08	0	314611..316077	+	488	82750024	-	SAB0261	-	phage-like protein
248	 31.03	0	316077..316466	+	129	82750025	-	SAB0262	-	phage-like protein
249	 30.30	0	316459..316623	+	54	82750026	-	SAB0263	-	phage-like protein
250	 29.00	-1	316669..316968	+	99	82750027	-	SAB0264	-	phage-like protein
251	 31.95	0	317562..318794	+	410	82750028	-	SAB0265	-	type-I specificity determinant subunit
252	 32.34	0	318846..319148	+	100	82750029	-	SAB0266	-	phage-related holin
253	 36.67	+1	320847..321056	+	69	82750030	-	SAB0268	-	hypothetical protein
254	 24.83	-2	321668..322255	+	195	82750031	-	SAB0269	-	hypothetical protein
255	 28.07	-1	322252..322707	+	151	82750032	-	SAB0270	-	hypothetical protein
256	 34.66	0	323332..324159	-	275	82750033	-	SAB0271c	-	hypothetical protein
257	 39.25	+1	324232..325431	-	399	82750034	-	SAB0272c	-	trimethylamine dehydrogenase
258	 37.92	+1	325733..326734	+	333	82750035	-	SAB0273	-	luciferase family protein
259	 36.64	+1	326768..327100	+	110	82750036	-	SAB0274	-	glycine cleavage system H protein
260	 36.33	+1	327101..327901	+	266	82750037	-	SAB0275	-	hypothetical protein
261	 37.97	+1	327888..328835	+	315	82750038	-	SAB0276	-	hypothetical protein
262	 34.02	0	328813..329835	+	340	82750039	-	SAB0277	-	lipoate-protein ligase
263	 38.08	+1	329979..331325	-	448	82750040	ulaA	SAB0278c	-	ascorbate-specific PTS system enzyme IIC
264	 36.14	0	331340..331624	-	94	82750041	-	SAB0279c	-	PTS system component
265	 35.81	0	331626..332069	-	147	82750042	-	SAB0280c	-	PTS system component
266	 34.25	0	332074..334029	-	651	82750043	-	SAB0281c	-	PTS system regulator
267	 27.48	-1	334016..334237	-	73	82750044	-	SAB0282c	-	hypothetical protein
268	 33.57	0	334241..334660	+	139	82750045	-	SAB0283	-	MarR family regulatory protein
269	 32.45	0	334767..336122	+	451	82750046	-	SAB0284	-	hypothetical protein
270	 28.80	-1	336229..336669	+	146	82750047	-	SAB0285	-	hypothetical protein
271	 36.79	+1	336753..338111	-	452	82750048	-	SAB0286c	-	glycerol-3-phosphate transporter
272	 34.74	0	338423..339349	+	308	82750049	-	SAB0287	-	glyoxylase family protein
273	 36.82	+1	339363..340424	+	353	82750050	-	SAB0288	-	luciferase-like monooxygenase
274	 33.86	0	340438..341004	+	188	82750051	-	SAB0289	-	NADH-dependent FMN reductase
275	 35.04	0	341064..342059	-	331	82750052	-	SAB0290c	-	hypothetical protein
276	 29.25	-1	342058..342351	+	97	82750053	-	SAB0291	-	hypothetical protein
277	 34.43	0	342364..342909	+	181	82750054	-	SAB0292	-	serine N-acetyltransferase
278	 30.88	0	343174..344028	+	284	82750055	-	SAB0293	-	lipoprotein
279	 34.38	0	345235..346947	+	570	82750056	-	SAB0295	-	hypothetical protein
280	 34.19	0	347196..347897	-	233	82750057	-	SAB0296c	-	sec-independent protein translocase protein
281	 35.19	0	347914..348129	-	71	82750058	-	SAB0297c	-	protein translocase subunit
282	 32.82	0	348237..348626	-	129	82750059	-	SAB0298c	-	hypothetical protein
283	 39.22	+1	348866..349069	+	67	82750060	-	SAB0299	-	DNA-binding protein
284	 31.23	0	349066..349779	+	237	82750061	-	SAB0300	-	hypothetical protein
285	 32.38	0	349804..350646	+	280	82750062	-	SAB0301	-	ABC transporter ATP-binding protein
286	 32.54	0	350646..351275	+	209	82750063	-	SAB0302	-	hypothetical protein
287	 32.10	0	351665..352798	-	377	82750064	-	SAB0303c	-	hypothetical protein
288	 38.32	+1	353336..354517	+	393	82750065	th1	SAB0304	-	acetyl-CoA acetyltransferase protein
289	 37.72	+1	354600..355352	-	250	82750066	-	SAB0305c	-	hypothetical protein
290	 34.01	0	355395..357623	-	742	82750067	metE1	SAB0306c	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
291	 36.26	0	357620..359461	-	613	82750068	metE2	SAB0307c	-	bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein
292	 38.24	+1	359430..360590	-	386	82750069	-	SAB0308c	-	cystathionine beta-lyase
293	 35.69	0	360587..361690	-	367	82750070	-	SAB0309c	-	cystathionine gamma-synthase
294	 32.45	0	361898..362236	+	112	82750071	-	SAB0310	-	hypothetical protein
295	 34.28	0	362354..363199	+	281	82750072	-	SAB0311	-	hypothetical protein
296	 31.18	0	363353..364234	+	293	82750073	-	SAB0312	-	hypothetical protein
297	 30.88	0	364264..364467	+	67	82750074	-	SAB0313	-	hypothetical protein
298	 35.70	0	364479..365576	+	365	82750075	-	SAB0314	-	translation-associated GTPase
299	 31.77	0	365662..365853	-	63	82750076	-	SAB0315c	-	hypothetical protein
300	 38.05	+1	366097..366393	+	98	82750077	rpsF	SAB0316	-	30S ribosomal protein S6
301	 38.10	+1	366414..366917	+	167	82750078	ssb	SAB0317	-	single-strand DNA-binding protein
302	 37.04	+1	366969..367211	+	80	82750079	rpsR	SAB0318	-	30S ribosomal protein S18
303	 28.40	-1	367487..368479	-	330	82750080	-	SAB0319c	-	hypothetical protein
304	 30.72	0	369384..369995	+	203	82750082	-	SAB0321	-	hypothetical protein
305	 32.25	0	370364..370732	+	122	82750083	-	SAB0322	-	hypothetical protein
306	 30.72	0	370912..371484	+	190	82750084	-	SAB0323	-	hypothetical protein
307	 28.03	-1	371622..371885	-	87	82750085	-	SAB0324c	-	hypothetical protein
308	 35.29	0	372178..372432	+	84	82750086	-	SAB0325	-	hypothetical protein
309	 32.13	0	372858..373439	+	193	82750087	-	SAB0326	-	hypothetical protein
310	 31.04	0	373505..373897	-	130	82750088	-	SAB0327c	-	hypothetical protein
311	 29.67	-1	374157..374783	-	208	82750089	-	SAB0328c	-	hypothetical protein
312	 32.65	0	374855..375148	-	97	82750090	-	SAB0329c	-	hypothetical protein
313	 37.40	+1	375227..376750	-	507	82750091	ahpF	SAB0330c	-	alkyl hydroperoxide reductase subunit F
314	 37.02	+1	376766..377335	-	189	82750092	ahpC	SAB0331c	-	alkyl hydroperoxide reductase subunit C
315	 37.70	+1	377827..378582	+	251	82750093	-	SAB0332	-	nitro/flavin reductase
316	 39.38	+1	378662..380050	-	462	82750094	-	SAB0333c	-	proton/sodium-glutamate symport protein
317	 32.54	0	380315..380692	-	125	82750095	-	SAB0334c	-	hypothetical protein
318	 37.10	+1	381031..381987	-	318	82750096	-	SAB0335c	-	hypothetical protein
319	 30.02	0	382105..382767	-	220	82750097	-	SAB0336c	-	hypothetical protein
320	 33.33	0	382910..383317	-	135	82750098	-	SAB0337c	-	hypothetical protein
321	 35.58	0	383830..384408	+	192	82750099	xpt	SAB0338	-	xanthine phosphoribosyltransferase
322	 35.86	0	384408..385676	+	422	82750100	pbuX	SAB0339	-	xanthine permease
323	 37.56	+1	385714..387180	+	488	82750101	guaB	SAB0340	-	inositol-monophosphate dehydrogenase
324	 37.16	+1	387205..388746	+	513	82750102	guaA	SAB0341	-	bifunctional GMP synthase/glutamine amidotransferase protein
325	 33.16	0	388840..389976	-	378	82750103	-	SAB0342c	-	integrase
326	 27.99	-1	390060..390845	-	261	82750104	-	SAB0343c	-	pathogenicity island protein
327	 27.63	-1	390962..391189	+	75	82750105	-	SAB0344	-	pathogenicity island protein
328	 33.72	0	391235..391495	+	86	82750106	-	SAB0345	-	pathogenicity island protein
329	 30.13	0	391542..391697	+	51	82750107	-	SAB0346	-	pathogenicity island protein
330	 27.94	-1	391682..391885	+	67	82750108	-	SAB0347	-	pathogenicity island protein
331	 30.47	0	391887..392270	+	127	82750109	-	SAB0348	-	pathogenicity island protein
332	 28.93	-1	392271..392588	+	105	82750110	-	SAB0349	-	pathogenicity island protein
333	 34.83	0	392652..393521	+	289	82750111	-	SAB0350	-	pathogenicity island protein
334	 33.10	0	393535..395244	+	569	82750112	-	SAB0351	-	pathogenicity island protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.