IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2404	 27.71	-1	2619263..2619511	+	82	82752187	-	SAB2481	-	hypothetical protein
2405	 36.23	0	2619571..2621190	-	539	82752188	-	SAB2482c	-	acetate-CoA ligase
2406	 31.31	0	2621363..2621806	-	147	82752189	-	SAB2483c	-	hypothetical protein
2407	 26.19	-2	2621844..2622011	-	55	82752190	-	SAB2484c	-	hypothetical protein
2408	 27.23	-1	2622086..2622298	-	70	82752191	-	SAB2485c	-	hypothetical protein
2409	 38.89	+1	2622578..2624287	-	569	82752192	cudB	SAB2486c	-	choline dehydrogenase
2410	 37.09	+1	2624548..2626038	-	496	82752193	cudA	SAB2487c	-	glycine betaine aldehyde dehydrogenase
2411	 35.56	0	2626270..2626854	+	194	82752194	-	SAB2488	-	hypothetical protein
2412	 35.49	0	2627024..2628646	-	540	82752195	cudT	SAB2489c	-	choline transporter
2413	 32.59	0	2629163..2629699	-	178	82752196	nrdG	SAB2490c	-	anaerobic ribonucleotide reductase small subunit
2414	 34.63	0	2629696..2631546	-	616	82752197	nrdD	SAB2491c	-	anaerobic ribonucleoside triphosphate reductase
2415	 36.03	0	2631793..2633163	-	456	82752198	-	SAB2492c	-	magnesium citrate secondary transporter
2416	 36.63	+1	2633637..2634242	-	201	82752199	-	SAB2493c	-	precorrin-2 dehydrogenase
2417	 34.98	0	2634305..2636185	-	626	82752200	cysJ	SAB2494c	-	sulfite reductase flavoprotein
2418	 31.33	0	2636580..2637077	-	165	82752201	-	SAB2495c	-	glutathione peroxidase
2419	 31.80	0	2637087..2637347	-	86	82752202	-	SAB2496c	-	hypothetical protein
2420	 31.48	0	2638501..2640501	-	666	82752203	-	SAB2497c	-	hypothetical protein
2421	 34.13	0	2640498..2641253	-	251	82752204	-	SAB2498c	-	ABC transporter ATP-binding protein
2422	 29.73	0	2641361..2642248	-	295	82752205	-	SAB2499c	-	two-component sensor histidine kinase
2423	 29.88	0	2642259..2642924	-	221	82752206	-	SAB2500c	-	two-component sensor response regulator
2424	 31.34	0	2642950..2643150	-	66	82752207	-	SAB2501c	-	hypothetical protein
2425	 35.30	0	2643348..2644772	+	474	82752208	phoB	SAB2502	-	alkaline phosphatase III precursor
2426	 31.80	0	2645055..2645510	-	151	82752209	-	SAB2503c	-	MarR family transcriptional regulator
2427	 33.46	0	2645755..2646516	-	253	82752210	-	SAB2504c	-	tributyrin esterase
2428	 39.06	+1	2646630..2649215	-	861	82752211	clfB	SAB2505c	-	clumping factor B
2429	 29.65	-1	2649565..2650269	-	234	82752212	-	SAB2506c	-	transcriptional regulator
2430	 36.94	+1	2650368..2651309	-	313	161777615	arcC	SAB2507c	-	carbamate kinase
2431	 35.15	0	2651326..2652756	-	476	82752214	arcD	SAB2508c	-	arginine-ornithine antiporter
2432	 33.04	0	2652847..2653857	-	336	82752215	arcB	SAB2509c	-	ornithine carbamoyltransferase
2433	 34.22	0	2653890..2655125	-	411	82752216	arcA	SAB2510c	-	arginine deiminase
2434	 29.56	-1	2655472..2655921	-	149	82752217	argR	SAB2511c	-	arginine repressor
2435	 35.95	0	2656287..2657816	-	509	82752218	aur	SAB2512c	-	zinc metalloproteinase aureolysin
2436	 31.44	0	2658240..2658767	-	175	82752219	isaB	SAB2513c	-	immunodominant antigen B
2437	 34.20	0	2659025..2659483	+	152	82752220	-	SAB2514	-	hypothetical protein
2438	 30.99	0	2659723..2661597	+	624	82752221	-	SAB2515	-	antiterminator transcriptional regulator
2439	 38.20	+1	2661673..2663625	+	650	82752222	-	SAB2516	-	PTS system fructose-specific II component
2440	 36.00	0	2663639..2664577	+	312	82752223	pmi	SAB2517	-	mannose-6-phosphate isomerase
2441	 35.01	0	2664689..2667664	-	991	82752224	-	SAB2518c	-	hypothetical protein
2442	 32.53	0	2667875..2669734	+	619	82752225	-	SAB2519	-	N-acetylmuramoyl-L-alanine amidase
2443	 35.65	0	2670001..2670561	-	186	82752226	-	SAB2520c	-	hypothetical protein
2444	 31.70	0	2670733..2672628	-	631	82752227	-	SAB2521c	-	surface anchored protein
2445	 33.33	0	2672870..2674228	-	452	82752228	-	SAB2522c	-	hypothetical protein
2446	 34.26	0	2674221..2675729	-	502	82752229	-	SAB2523c	-	glycosyl transferase
2447	 32.60	0	2678127..2679086	-	319	82752230	-	SAB2525c	-	hypothetical protein
2448	 36.01	0	2679064..2680632	-	522	82752231	-	SAB2526c	-	hypothetical protein
2449	 33.98	0	2680622..2682175	-	517	82752232	-	SAB2527c	-	hypothetical protein
2450	 29.80	0	2682186..2683232	-	348	82752233	-	SAB2528c	-	preprotein translocase subunit SecY
2451	 31.43	0	2689915..2690859	+	314	82752234	-	SAB2531	-	lipoprotein
2452	 32.03	0	2690843..2691148	+	101	82752235	-	SAB2532	-	hypothetical protein
2453	 34.17	0	2691297..2691656	+	119	82752236	-	SAB2533	-	hypothetical protein
2454	 35.13	0	2691741..2692352	-	203	82752237	-	SAB2534c	-	hypothetical protein
2455	 35.64	0	2692431..2692907	-	158	82752238	-	SAB2535c	-	methionine sulfoxide reductase A
2456	 32.93	0	2692910..2693410	-	166	82752239	-	SAB2536c	-	acetyltransferase
2457	 32.55	0	2693645..2694412	-	255	82752240	-	SAB2537c	-	capsular polysaccharide biosynthesis protein
2458	 35.06	0	2694409..2695101	-	230	82752241	-	SAB2538c	-	capsular polysaccharide biosynthesis protein
2459	 29.26	-1	2695118..2695804	-	228	82752242	-	SAB2539c	-	capsular polysaccharide biosynthesis protein
2460	 27.45	-1	2696628..2697188	-	186	82752243	icaR	SAB2540c	-	ica operon transcription regulator
2461	 33.82	0	2697352..2698590	+	412	82752244	icaA	SAB2541	-	N-glycosyltransferase PgaC
2462	 32.70	0	2698541..2698858	+	105	82752245	icaD	SAB2542	-	intercellular adhesion protein D
2463	 29.32	-1	2698855..2699727	+	290	82752246	icaB	SAB2543	-	intercellular adhesion protein B
2464	 26.97	-1	2699714..2700766	+	350	82752247	icaC	SAB2544	-	intercellular adhesion protein C
2465	 42.31	+2	2700775..2700930	-	51	82752248	-	SAB2545c	-	hypothetical protein
2466	 34.16	0	2701076..2703121	-	681	82752249	lip	SAB2546c	-	triacylglycerol lipase precursor
2467	 23.11	-2	2703841..2704104	-	87	82752250	-	SAB2547c	-	hypothetical protein
2468	 34.76	0	2704640..2705272	-	210	82752251	hisIE	SAB2548c	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2469	 37.29	+1	2705269..2706027	-	252	82752252	hisF	SAB2549c	-	imidazole glycerol phosphate synthase subunit
2470	 39.72	+2	2706024..2706728	-	234	82752253	hisA	SAB2550c	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2471	 36.61	+1	2706721..2707299	-	192	82752254	hisH	SAB2551c	-	imidazole glycerol phosphate synthase subunit HisH
2472	 36.61	+1	2707296..2707874	-	192	82752255	hisB	SAB2552c	-	imidazoleglycerol-phosphate dehydratase
2473	 35.81	0	2708871..2710121	-	416	82752256	hisD	SAB2554c	-	histidinol dehydrogenase
2474	 34.63	0	2710114..2710728	-	204	82752257	hisG	SAB2555c	-	ATP phosphoribosyltransferase catalytic subunit
2475	 34.80	0	2710746..2711564	-	272	82752258	hisZ	SAB2556c	-	ATP phosphoribosyltransferase regulatory subunit
2476	 32.36	0	2711868..2712992	-	374	82752259	-	SAB2557c	-	hypothetical protein
2477	 30.52	0	2713110..2713607	-	165	82752260	-	SAB2558c	-	hypothetical protein
2478	 29.38	-1	2713654..2714487	-	277	82752261	-	SAB2559c	-	cobalt ABC transporter
2479	 33.16	0	2714484..2716196	-	570	82752262	-	SAB2560c	-	ATP-binding ABC transporter
2480	 32.43	0	2716249..2716803	-	184	82752263	-	SAB2561c	-	hypothetical protein
2481	 35.22	0	2716832..2717680	-	282	82752264	-	SAB2562c	-	hypothetical protein
2482	 32.17	0	2718062..2718577	+	171	82752265	-	SAB2563	-	hypothetical protein
2483	 35.28	0	2719052..2720026	-	324	82752266	drp35	SAB2564c	-	antibiotic-induced protein
2484	 35.11	0	2720267..2721223	+	318	82752267	-	SAB2565	-	hypothetical protein
2485	 37.09	+1	2721375..2722013	+	212	82752268	pcp	SAB2566	-	pyrrolidone-carboxylate peptidase
2486	 28.65	-1	2722132..2722899	-	255	82752269	-	SAB2567c	-	hypothetical protein
2487	 33.33	0	2722889..2723233	-	114	82752270	-	SAB2568c	-	hypothetical protein
2488	 31.61	0	2723394..2723858	+	154	82752271	-	SAB2569	-	hypothetical protein
2489	 25.69	-2	2723861..2724004	+	47	82752272	-	SAB2570	-	hypothetical protein
2490	 38.20	+1	2724097..2725515	+	472	82752273	-	SAB2571	-	2-oxoglutarate-malate translocator
2491	 33.77	0	2725928..2726836	-	302	82752274	-	SAB2572c	-	hypothetical protein
2492	 34.55	0	2727058..2727633	+	191	82752275	-	SAB2573	-	hypothetical protein
2493	 34.22	0	2727799..2728815	+	338	82752276	-	SAB2574	-	high-affinity nickel-transport protein
2494	 31.50	0	2729052..2729870	+	272	82752277	-	SAB2575	-	hypothetical protein
2495	 37.37	+1	2729912..2730109	-	65	82752278	-	SAB2576c	-	hypothetical protein
2496	 30.41	0	2730244..2730756	-	170	82752279	-	SAB2577c	-	hypothetical protein
2497	 36.23	0	2731046..2731804	+	252	82752280	vraD	SAB2578	-	ABC transporter
2498	 31.47	0	2731794..2733674	+	626	82752281	vraE	SAB2579	-	ABC transporter permease
2499	 30.21	0	2733767..2733958	+	63	82752282	-	SAB2580	-	hypothetical protein
2500	 38.31	+1	2734351..2734551	+	66	82752283	cspB	SAB2581	-	cold shock protein
2501	 32.28	0	2734678..2735247	-	189	82752284	-	SAB2582c	-	hypothetical protein
2502	 34.09	0	2735507..2735902	-	131	82752285	-	SAB2583c	-	hypothetical protein
2503	 36.72	+1	2735970..2736323	-	117	82752286	-	SAB2584c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.