IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2359	 35.06	0	2575447..2576955	-	502	82752142	crtN	SAB2434c	-	squalene synthase
2360	 31.48	0	2576967..2577830	-	287	82752143	crtM	SAB2435c	-	squalene desaturase
2361	 36.44	+1	2577867..2578994	-	375	82752144	-	SAB2436c	-	hypothetical protein
2362	 34.87	0	2579000..2580493	-	497	82752145	-	SAB2437c	-	phytoene dehydrogenase
2363	 30.12	0	2580486..2580983	-	165	82752146	-	SAB2438c	-	hypothetical protein
2364	 36.59	+1	2581149..2581916	-	255	82752147	ssaA	SAB2439c	-	secretory antigen precursor
2365	 29.93	0	2582028..2582174	-	48	82752148	-	SAB2440c	-	hypothetical protein
2366	 32.78	0	2582277..2584088	-	603	82752149	-	SAB2441c	-	membrane-embedded acyltransferase
2367	 24.54	-2	2584592..2585080	-	162	82752150	-	SAB2442c	-	acetyltransferase
2368	 41.60	+2	2585356..2586057	-	233	82752151	isaA	SAB2443c	-	immunodominant antigen A
2369	 36.46	+1	2586665..2587720	-	351	82752152	-	SAB2444c	-	hypothetical protein
2370	 32.63	0	2588130..2588699	+	189	82752153	-	SAB2445	-	TetR family regulatory protein
2371	 35.13	0	2588897..2589397	+	166	82752154	-	SAB2446	-	hypothetical protein
2372	 32.90	0	2589617..2589847	+	76	82752155	-	SAB2447	-	hypothetical protein
2373	 34.66	0	2589978..2590355	-	125	82752156	-	SAB2448c	-	hypothetical protein
2374	 31.53	0	2590372..2590926	-	184	82752157	-	SAB2449c	-	hypothetical protein
2375	 35.63	0	2590935..2591195	-	86	82752158	-	SAB2450c	-	hypothetical protein
2376	 32.00	0	2591214..2591513	-	99	82752159	-	SAB2451c	-	hypothetical protein
2377	 29.57	-1	2591644..2592201	+	185	82752160	-	SAB2452	-	hypothetical protein
2378	 36.88	+1	2592194..2592898	+	234	82752161	-	SAB2453	-	short chain oxidoreductase
2379	 37.30	+1	2594021..2594851	+	276	82752162	-	SAB2455	-	hypothetical protein
2380	 36.03	0	2594998..2595888	-	296	82752163	-	SAB2456c	-	cobalmin synthesis protein
2381	 34.53	0	2595988..2597328	-	446	82752164	-	SAB2457c	-	hypothetical protein
2382	 35.32	0	2597322..2598428	-	368	82752165	-	SAB2458c	-	hypothetical protein
2383	 29.89	0	2598488..2598661	-	57	82752166	-	SAB2459c	-	hypothetical protein
2384	 26.94	-1	2598764..2599060	-	98	82752167	-	SAB2460c	-	hypothetical protein
2385	 36.59	+1	2599048..2599416	-	122	82752168	-	SAB2461c	-	hypothetical protein
2386	 31.88	0	2599431..2599706	-	91	82752169	-	SAB2462c	-	hypothetical protein
2387	 38.75	+1	2600046..2600912	-	288	82752170	-	SAB2463c	-	hypothetical protein
2388	 35.68	0	2601130..2602194	+	354	82752171	-	SAB2464	-	dihydroorotate dehydrogenase 2
2389	 30.80	0	2602349..2602624	+	91	82752172	-	SAB2465	-	hypothetical protein
2390	 33.47	0	2602810..2603532	-	240	82752173	-	SAB2466c	-	hypothetical protein
2391	 36.22	0	2603882..2604331	+	149	82752174	-	SAB2467	-	hypothetical protein
2392	 30.27	0	2604412..2604999	-	195	82752175	-	SAB2468c	-	hypothetical protein
2393	 36.54	+1	2605142..2606824	+	560	82752176	-	SAB2469	-	hypothetical protein
2394	 33.59	0	2606953..2607336	-	127	82752177	panD	SAB2470c	-	aspartate alpha-decarboxylase
2395	 36.62	+1	2607338..2608189	-	283	82752178	panC	SAB2471c	-	pantoate--beta-alanine ligase
2396	 36.39	+1	2608182..2609000	-	272	82752179	panB	SAB2472c	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2397	 37.63	+1	2609073..2609933	+	286	82752180	-	SAB2473	-	2-dehydropantoate 2-reductase
2398	 36.31	0	2610019..2610723	-	234	82752181	-	SAB2474c	-	alpha-acetolactate decarboxylase
2399	 35.31	0	2611001..2611960	-	319	82752182	ldh	SAB2475c	-	L-lactate dehydrogenase
2400	 37.47	+1	2612647..2614095	+	482	82752183	-	SAB2476	-	cationic amino acid transporter
2401	 28.06	-1	2615766..2616182	+	138	82752184	-	SAB2478	-	hypothetical protein
2402	 34.68	0	2616305..2617195	+	296	82752185	fda	SAB2479	-	fructose-1,6-bisphosphate aldolase
2403	 36.01	0	2617390..2618886	-	498	82752186	mqo	SAB2480c	-	malate:quinone oxidoreductase
2404	 27.71	-1	2619263..2619511	+	82	82752187	-	SAB2481	-	hypothetical protein
2405	 36.23	0	2619571..2621190	-	539	82752188	-	SAB2482c	-	acetate-CoA ligase
2406	 31.31	0	2621363..2621806	-	147	82752189	-	SAB2483c	-	hypothetical protein
2407	 26.19	-2	2621844..2622011	-	55	82752190	-	SAB2484c	-	hypothetical protein
2408	 27.23	-1	2622086..2622298	-	70	82752191	-	SAB2485c	-	hypothetical protein
2409	 38.89	+1	2622578..2624287	-	569	82752192	cudB	SAB2486c	-	choline dehydrogenase
2410	 37.09	+1	2624548..2626038	-	496	82752193	cudA	SAB2487c	-	glycine betaine aldehyde dehydrogenase
2411	 35.56	0	2626270..2626854	+	194	82752194	-	SAB2488	-	hypothetical protein
2412	 35.49	0	2627024..2628646	-	540	82752195	cudT	SAB2489c	-	choline transporter
2413	 32.59	0	2629163..2629699	-	178	82752196	nrdG	SAB2490c	-	anaerobic ribonucleotide reductase small subunit
2414	 34.63	0	2629696..2631546	-	616	82752197	nrdD	SAB2491c	-	anaerobic ribonucleoside triphosphate reductase
2415	 36.03	0	2631793..2633163	-	456	82752198	-	SAB2492c	-	magnesium citrate secondary transporter
2416	 36.63	+1	2633637..2634242	-	201	82752199	-	SAB2493c	-	precorrin-2 dehydrogenase
2417	 34.98	0	2634305..2636185	-	626	82752200	cysJ	SAB2494c	-	sulfite reductase flavoprotein
2418	 31.33	0	2636580..2637077	-	165	82752201	-	SAB2495c	-	glutathione peroxidase
2419	 31.80	0	2637087..2637347	-	86	82752202	-	SAB2496c	-	hypothetical protein
2420	 31.48	0	2638501..2640501	-	666	82752203	-	SAB2497c	-	hypothetical protein
2421	 34.13	0	2640498..2641253	-	251	82752204	-	SAB2498c	-	ABC transporter ATP-binding protein
2422	 29.73	0	2641361..2642248	-	295	82752205	-	SAB2499c	-	two-component sensor histidine kinase
2423	 29.88	0	2642259..2642924	-	221	82752206	-	SAB2500c	-	two-component sensor response regulator
2424	 31.34	0	2642950..2643150	-	66	82752207	-	SAB2501c	-	hypothetical protein
2425	 35.30	0	2643348..2644772	+	474	82752208	phoB	SAB2502	-	alkaline phosphatase III precursor
2426	 31.80	0	2645055..2645510	-	151	82752209	-	SAB2503c	-	MarR family transcriptional regulator
2427	 33.46	0	2645755..2646516	-	253	82752210	-	SAB2504c	-	tributyrin esterase
2428	 39.06	+1	2646630..2649215	-	861	82752211	clfB	SAB2505c	-	clumping factor B
2429	 29.65	-1	2649565..2650269	-	234	82752212	-	SAB2506c	-	transcriptional regulator
2430	 36.94	+1	2650368..2651309	-	313	161777615	arcC	SAB2507c	-	carbamate kinase
2431	 35.15	0	2651326..2652756	-	476	82752214	arcD	SAB2508c	-	arginine-ornithine antiporter
2432	 33.04	0	2652847..2653857	-	336	82752215	arcB	SAB2509c	-	ornithine carbamoyltransferase
2433	 34.22	0	2653890..2655125	-	411	82752216	arcA	SAB2510c	-	arginine deiminase
2434	 29.56	-1	2655472..2655921	-	149	82752217	argR	SAB2511c	-	arginine repressor
2435	 35.95	0	2656287..2657816	-	509	82752218	aur	SAB2512c	-	zinc metalloproteinase aureolysin
2436	 31.44	0	2658240..2658767	-	175	82752219	isaB	SAB2513c	-	immunodominant antigen B
2437	 34.20	0	2659025..2659483	+	152	82752220	-	SAB2514	-	hypothetical protein
2438	 30.99	0	2659723..2661597	+	624	82752221	-	SAB2515	-	antiterminator transcriptional regulator
2439	 38.20	+1	2661673..2663625	+	650	82752222	-	SAB2516	-	PTS system fructose-specific II component
2440	 36.00	0	2663639..2664577	+	312	82752223	pmi	SAB2517	-	mannose-6-phosphate isomerase
2441	 35.01	0	2664689..2667664	-	991	82752224	-	SAB2518c	-	hypothetical protein
2442	 32.53	0	2667875..2669734	+	619	82752225	-	SAB2519	-	N-acetylmuramoyl-L-alanine amidase
2443	 35.65	0	2670001..2670561	-	186	82752226	-	SAB2520c	-	hypothetical protein
2444	 31.70	0	2670733..2672628	-	631	82752227	-	SAB2521c	-	surface anchored protein
2445	 33.33	0	2672870..2674228	-	452	82752228	-	SAB2522c	-	hypothetical protein
2446	 34.26	0	2674221..2675729	-	502	82752229	-	SAB2523c	-	glycosyl transferase
2447	 32.60	0	2678127..2679086	-	319	82752230	-	SAB2525c	-	hypothetical protein
2448	 36.01	0	2679064..2680632	-	522	82752231	-	SAB2526c	-	hypothetical protein
2449	 33.98	0	2680622..2682175	-	517	82752232	-	SAB2527c	-	hypothetical protein
2450	 29.80	0	2682186..2683232	-	348	82752233	-	SAB2528c	-	preprotein translocase subunit SecY
2451	 31.43	0	2689915..2690859	+	314	82752234	-	SAB2531	-	lipoprotein
2452	 32.03	0	2690843..2691148	+	101	82752235	-	SAB2532	-	hypothetical protein
2453	 34.17	0	2691297..2691656	+	119	82752236	-	SAB2533	-	hypothetical protein
2454	 35.13	0	2691741..2692352	-	203	82752237	-	SAB2534c	-	hypothetical protein
2455	 35.64	0	2692431..2692907	-	158	82752238	-	SAB2535c	-	methionine sulfoxide reductase A
2456	 32.93	0	2692910..2693410	-	166	82752239	-	SAB2536c	-	acetyltransferase
2457	 32.55	0	2693645..2694412	-	255	82752240	-	SAB2537c	-	capsular polysaccharide biosynthesis protein
2458	 35.06	0	2694409..2695101	-	230	82752241	-	SAB2538c	-	capsular polysaccharide biosynthesis protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.