IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2324	 32.96	0	2533956..2534765	+	269	82752107	ddh	SAB2398	-	D-lactate dehydrogenase
2325	 34.58	0	2535012..2535812	-	266	82752108	-	SAB2399c	-	hypothetical protein
2326	 24.37	-2	2536133..2536768	+	211	82752109	-	SAB2400	-	ABC transporter ATP-binding protein
2327	 27.52	-1	2536783..2537505	+	240	82752110	-	SAB2401	-	hypothetical protein
2328	 32.69	0	2537666..2538286	-	206	82752111	srtA	SAB2402c	-	sortase
2329	 36.79	+1	2538480..2538971	+	163	82752112	-	SAB2403	-	phosphinothricin N-acetyltransferase
2330	 41.00	+2	2539469..2540368	-	299	82752113	-	SAB2404c	-	L-serine dehydratase alpha subunit
2331	 32.01	0	2540382..2541062	-	226	82752114	-	SAB2405c	-	L-serine dehydratase beta subunit
2332	 37.36	+1	2541065..2542108	-	347	82752115	-	SAB2406c	-	surface-exposed regulatory protein
2333	 33.94	0	2542989..2543153	+	54	82752116	-	SAB2407	-	hypothetical protein
2334	 34.26	0	2543199..2543951	+	250	82752117	-	SAB2408	-	hypothetical protein
2335	 37.67	+1	2544031..2544999	-	322	82752118	-	SAB2409c	-	hypothetical protein
2336	 36.52	+1	2545132..2545476	-	114	82752119	-	SAB2410c	-	hypothetical protein
2337	 36.74	+1	2545518..2545928	-	136	82752120	-	SAB2411c	-	hypothetical protein
2338	 36.53	+1	2546308..2548374	-	688	82752121	glcB	SAB2412c	-	PTS system glucose-specific IIABC component
2339	 34.48	0	2548674..2550413	-	579	82752122	-	SAB2413c	-	pyruvate oxidase
2340	 34.06	0	2550453..2551142	-	229	82752123	-	SAB2414c	-	hypothetical protein
2341	 33.45	0	2551743..2552627	-	294	82752124	-	SAB2416c	-	LysR family transcriptional regulator
2342	 35.16	0	2552788..2553006	+	72	82752125	-	SAB2417	-	hypothetical protein
2343	 34.26	0	2553396..2553827	+	143	82752126	-	SAB2418	-	secretory antigen SsaA-like protein
2344	 38.72	+1	2553966..2555246	-	426	82752127	mvaA	SAB2419c	-	hydroxymethylglutaryl-CoA reductase
2345	 37.45	+1	2555500..2556666	+	388	82752128	mvaS	SAB2420	-	3-hydroxy-3-methylglutaryl CoA synthase
2346	 28.83	-1	2556895..2557560	-	221	82752129	-	SAB2421c	-	hypothetical protein
2347	 38.89	+1	2557761..2558282	-	173	82752130	adaB	SAB2422c	-	methylated-DNA-protein-cysteine S-methyltransferase
2348	 35.99	0	2558644..2560752	+	702	82752131	clpL	SAB2423	-	ATP-dependent proteinase chain
2349	 34.79	0	2561002..2562996	-	664	82752132	feoB	SAB2424c	-	ferrous iron transport protein B
2350	 30.70	0	2563008..2563235	-	75	82752133	-	SAB2425c	-	hypothetical protein
2351	 34.10	0	2563452..2565941	-	829	82752134	-	SAB2426c	-	membrane transporter
2352	 29.33	-1	2566085..2566633	+	182	82752135	-	SAB2427	-	hypothetical protein
2353	 36.57	+1	2566988..2568532	-	514	82752136	-	SAB2428c	-	1-pyrroline-5-carboxylate dehydrogenase
2354	 36.08	0	2568722..2569303	-	193	82752137	-	SAB2429c	-	galactoside-O-acetyltransferase
2355	 30.85	0	2569548..2569748	+	66	82752138	-	SAB2430	-	hypothetical protein
2356	 37.57	+1	2569988..2572396	+	802	82752139	copA	SAB2431	-	copper-transporting ATPase
2357	 36.14	0	2572845..2573843	-	332	82752140	-	SAB2432c	-	D-lactate dehydrogenase
2358	 36.19	0	2573866..2575020	-	384	82752141	-	SAB2433c	-	aminotransferase
2359	 35.06	0	2575447..2576955	-	502	82752142	crtN	SAB2434c	-	squalene synthase
2360	 31.48	0	2576967..2577830	-	287	82752143	crtM	SAB2435c	-	squalene desaturase
2361	 36.44	+1	2577867..2578994	-	375	82752144	-	SAB2436c	-	hypothetical protein
2362	 34.87	0	2579000..2580493	-	497	82752145	-	SAB2437c	-	phytoene dehydrogenase
2363	 30.12	0	2580486..2580983	-	165	82752146	-	SAB2438c	-	hypothetical protein
2364	 36.59	+1	2581149..2581916	-	255	82752147	ssaA	SAB2439c	-	secretory antigen precursor
2365	 29.93	0	2582028..2582174	-	48	82752148	-	SAB2440c	-	hypothetical protein
2366	 32.78	0	2582277..2584088	-	603	82752149	-	SAB2441c	-	membrane-embedded acyltransferase
2367	 24.54	-2	2584592..2585080	-	162	82752150	-	SAB2442c	-	acetyltransferase
2368	 41.60	+2	2585356..2586057	-	233	82752151	isaA	SAB2443c	-	immunodominant antigen A
2369	 36.46	+1	2586665..2587720	-	351	82752152	-	SAB2444c	-	hypothetical protein
2370	 32.63	0	2588130..2588699	+	189	82752153	-	SAB2445	-	TetR family regulatory protein
2371	 35.13	0	2588897..2589397	+	166	82752154	-	SAB2446	-	hypothetical protein
2372	 32.90	0	2589617..2589847	+	76	82752155	-	SAB2447	-	hypothetical protein
2373	 34.66	0	2589978..2590355	-	125	82752156	-	SAB2448c	-	hypothetical protein
2374	 31.53	0	2590372..2590926	-	184	82752157	-	SAB2449c	-	hypothetical protein
2375	 35.63	0	2590935..2591195	-	86	82752158	-	SAB2450c	-	hypothetical protein
2376	 32.00	0	2591214..2591513	-	99	82752159	-	SAB2451c	-	hypothetical protein
2377	 29.57	-1	2591644..2592201	+	185	82752160	-	SAB2452	-	hypothetical protein
2378	 36.88	+1	2592194..2592898	+	234	82752161	-	SAB2453	-	short chain oxidoreductase
2379	 37.30	+1	2594021..2594851	+	276	82752162	-	SAB2455	-	hypothetical protein
2380	 36.03	0	2594998..2595888	-	296	82752163	-	SAB2456c	-	cobalmin synthesis protein
2381	 34.53	0	2595988..2597328	-	446	82752164	-	SAB2457c	-	hypothetical protein
2382	 35.32	0	2597322..2598428	-	368	82752165	-	SAB2458c	-	hypothetical protein
2383	 29.89	0	2598488..2598661	-	57	82752166	-	SAB2459c	-	hypothetical protein
2384	 26.94	-1	2598764..2599060	-	98	82752167	-	SAB2460c	-	hypothetical protein
2385	 36.59	+1	2599048..2599416	-	122	82752168	-	SAB2461c	-	hypothetical protein
2386	 31.88	0	2599431..2599706	-	91	82752169	-	SAB2462c	-	hypothetical protein
2387	 38.75	+1	2600046..2600912	-	288	82752170	-	SAB2463c	-	hypothetical protein
2388	 35.68	0	2601130..2602194	+	354	82752171	-	SAB2464	-	dihydroorotate dehydrogenase 2
2389	 30.80	0	2602349..2602624	+	91	82752172	-	SAB2465	-	hypothetical protein
2390	 33.47	0	2602810..2603532	-	240	82752173	-	SAB2466c	-	hypothetical protein
2391	 36.22	0	2603882..2604331	+	149	82752174	-	SAB2467	-	hypothetical protein
2392	 30.27	0	2604412..2604999	-	195	82752175	-	SAB2468c	-	hypothetical protein
2393	 36.54	+1	2605142..2606824	+	560	82752176	-	SAB2469	-	hypothetical protein
2394	 33.59	0	2606953..2607336	-	127	82752177	panD	SAB2470c	-	aspartate alpha-decarboxylase
2395	 36.62	+1	2607338..2608189	-	283	82752178	panC	SAB2471c	-	pantoate--beta-alanine ligase
2396	 36.39	+1	2608182..2609000	-	272	82752179	panB	SAB2472c	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2397	 37.63	+1	2609073..2609933	+	286	82752180	-	SAB2473	-	2-dehydropantoate 2-reductase
2398	 36.31	0	2610019..2610723	-	234	82752181	-	SAB2474c	-	alpha-acetolactate decarboxylase
2399	 35.31	0	2611001..2611960	-	319	82752182	ldh	SAB2475c	-	L-lactate dehydrogenase
2400	 37.47	+1	2612647..2614095	+	482	82752183	-	SAB2476	-	cationic amino acid transporter
2401	 28.06	-1	2615766..2616182	+	138	82752184	-	SAB2478	-	hypothetical protein
2402	 34.68	0	2616305..2617195	+	296	82752185	fda	SAB2479	-	fructose-1,6-bisphosphate aldolase
2403	 36.01	0	2617390..2618886	-	498	82752186	mqo	SAB2480c	-	malate:quinone oxidoreductase
2404	 27.71	-1	2619263..2619511	+	82	82752187	-	SAB2481	-	hypothetical protein
2405	 36.23	0	2619571..2621190	-	539	82752188	-	SAB2482c	-	acetate-CoA ligase
2406	 31.31	0	2621363..2621806	-	147	82752189	-	SAB2483c	-	hypothetical protein
2407	 26.19	-2	2621844..2622011	-	55	82752190	-	SAB2484c	-	hypothetical protein
2408	 27.23	-1	2622086..2622298	-	70	82752191	-	SAB2485c	-	hypothetical protein
2409	 38.89	+1	2622578..2624287	-	569	82752192	cudB	SAB2486c	-	choline dehydrogenase
2410	 37.09	+1	2624548..2626038	-	496	82752193	cudA	SAB2487c	-	glycine betaine aldehyde dehydrogenase
2411	 35.56	0	2626270..2626854	+	194	82752194	-	SAB2488	-	hypothetical protein
2412	 35.49	0	2627024..2628646	-	540	82752195	cudT	SAB2489c	-	choline transporter
2413	 32.59	0	2629163..2629699	-	178	82752196	nrdG	SAB2490c	-	anaerobic ribonucleotide reductase small subunit
2414	 34.63	0	2629696..2631546	-	616	82752197	nrdD	SAB2491c	-	anaerobic ribonucleoside triphosphate reductase
2415	 36.03	0	2631793..2633163	-	456	82752198	-	SAB2492c	-	magnesium citrate secondary transporter
2416	 36.63	+1	2633637..2634242	-	201	82752199	-	SAB2493c	-	precorrin-2 dehydrogenase
2417	 34.98	0	2634305..2636185	-	626	82752200	cysJ	SAB2494c	-	sulfite reductase flavoprotein
2418	 31.33	0	2636580..2637077	-	165	82752201	-	SAB2495c	-	glutathione peroxidase
2419	 31.80	0	2637087..2637347	-	86	82752202	-	SAB2496c	-	hypothetical protein
2420	 31.48	0	2638501..2640501	-	666	82752203	-	SAB2497c	-	hypothetical protein
2421	 34.13	0	2640498..2641253	-	251	82752204	-	SAB2498c	-	ABC transporter ATP-binding protein
2422	 29.73	0	2641361..2642248	-	295	82752205	-	SAB2499c	-	two-component sensor histidine kinase
2423	 29.88	0	2642259..2642924	-	221	82752206	-	SAB2500c	-	two-component sensor response regulator
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.