IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2184	 36.82	+1	2381146..2381547	-	133	82751967	-	SAB2251c	-	hypothetical protein
2185	 35.07	0	2381583..2382617	-	344	82751968	-	SAB2252c	-	thioredoxin reductase
2186	 30.79	0	2382849..2383280	-	143	82751969	-	SAB2253c	-	hypothetical protein
2187	 31.46	0	2383486..2384712	-	408	82751970	-	SAB2254c	-	hypothetical protein
2188	 30.93	0	2384873..2385496	+	207	82751971	-	SAB2255	-	hypothetical protein
2189	 29.84	0	2385542..2386486	+	314	82751972	-	SAB2256	-	cationic membrane transport protein
2190	 35.41	0	2386572..2388014	-	480	82751973	scrA	SAB2257c	-	PTS system sucrose-specific IIBC component
2191	 30.21	0	2388197..2388580	+	127	82751974	-	SAB2258	-	hypothetical protein
2192	 24.14	-2	2389855..2390028	+	57	82751975	-	SAB2259	-	hypothetical protein
2193	 28.63	-1	2390068..2392173	+	701	82751976	-	SAB2260	-	hypothetical protein
2194	 31.91	0	2392244..2392666	+	140	82751977	-	SAB2261	-	hypothetical protein
2195	 29.54	-1	2392944..2393312	+	122	82751978	-	SAB2262	-	hypothetical protein
2196	 33.10	0	2393507..2394784	-	425	82751979	gltT	SAB2263c	-	proton, sodium-glutamate symport protein
2197	 27.32	-1	2394966..2395331	-	121	82751980	-	SAB2264c	-	hypothetical protein
2198	 28.64	-1	2395729..2396175	+	148	82751981	-	SAB2265	-	MarR family transcriptional regulator
2199	 29.84	0	2396391..2396819	+	142	82751982	-	SAB2266	-	hypothetical protein
2200	 34.10	0	2396926..2398095	-	389	82751983	narT	SAB2267c	-	nitrite extrusion protein
2201	 30.49	0	2398454..2399368	+	304	82751984	-	SAB2268	-	hypothetical protein
2202	 27.40	-1	2399347..2400087	+	246	82751985	-	SAB2269	-	regulatory protein
2203	 33.79	0	2400344..2400997	-	217	82751986	-	SAB2270c	-	two-component response regulator
2204	 33.82	0	2401020..2402054	-	344	82751987	-	SAB2271c	-	two component sensor histidine kinase
2205	 33.11	0	2402078..2402530	-	150	82751988	-	SAB2272c	-	hypothetical protein
2206	 32.60	0	2402550..2403227	-	225	82751989	narI	SAB2273c	-	nitrate reductase gamma chain
2207	 29.86	0	2403220..2403795	-	191	82751990	narJ	SAB2274c	-	nitrate reductase delta chain
2208	 37.88	+1	2403788..2405347	-	519	82751991	narH	SAB2275c	-	nitrate reductase beta chain
2209	 38.27	+1	2405337..2409026	-	1229	82751992	narG	SAB2276c	-	nitrate reductase alpha chain
2210	 26.98	-1	2408998..2409123	-	41	82751993	-	SAB2277c	-	hypothetical protein
2211	 36.81	+1	2409334..2410311	-	325	82751994	-	SAB2278c	-	uroporphyrin-III C-methyltransferase
2212	 35.87	0	2410302..2410616	-	104	82751995	nasE	SAB2279c	-	assimilatory nitrite reductase
2213	 36.20	0	2410620..2413025	-	801	82751996	nasD	SAB2280c	-	nitrite reductase
2214	 34.99	0	2413053..2413838	-	261	82751997	-	SAB2281c	-	fumarate and nitrate reduction regulatory protein
2215	 36.98	+1	2414048..2414596	-	182	82751998	-	SAB2282c	-	hypothetical protein
2216	 31.76	0	2415028..2415852	-	274	82751999	-	SAB2283c	-	nitrite transporter
2217	 25.68	-2	2416055..2416237	-	60	82752000	-	SAB2284c	-	hypothetical protein
2218	 34.40	0	2416324..2416791	-	155	82752001	-	SAB2285c	-	hypothetical protein
2219	 32.04	0	2416977..2418524	-	515	82752002	-	SAB2286c	-	zinc-binding lipoprotein
2220	 31.09	0	2418818..2419084	-	88	82752003	-	SAB2287c	-	hypothetical protein
2221	 31.35	0	2419084..2419335	-	83	82752004	-	SAB2288c	-	hypothetical protein
2222	 29.33	-1	2419606..2420205	-	199	82752005	-	SAB2289c	-	lipoprotein
2223	 30.30	0	2420224..2420586	-	120	82752006	-	SAB2290c	-	lipoprotein
2224	 34.70	0	2422187..2422918	-	243	82752007	-	SAB2292c	-	ABC transporter
2225	 33.75	0	2422915..2423634	-	239	82752008	-	SAB2293c	-	ABC transporter permease
2226	 31.41	0	2423615..2424394	-	259	82752009	-	SAB2294c	-	extracellular amino acid binding ABC transporter
2227	 33.82	0	2424515..2425954	-	479	82752010	-	SAB2295c	-	multidrug resistanc-related transport system protein
2228	 33.48	0	2426387..2427073	-	228	82752011	-	SAB2296c	-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
2229	 33.22	0	2427400..2428266	-	288	82752012	-	SAB2297c	-	cation efflux family protein
2230	 31.35	0	2428895..2430205	+	436	82752013	sbi	SAB2298	-	immunoglobulin G-binding protein
2231	 30.60	0	2430378..2430560	-	60	82752014	-	SAB2299c	-	hypothetical protein
2232	 32.90	0	2430695..2431624	+	309	82752015	hlgA	SAB2300	-	gamma-hemolysin component A precursor
2233	 33.12	0	2432192..2433139	+	315	82752016	hlgC	SAB2301	-	gamma-hemolysin component C
2234	 32.34	0	2433141..2433947	+	268	82752017	hlgB	SAB2302	-	gamma-hemolysin component B
2235	 29.49	-1	2434169..2434636	-	155	82752018	-	SAB2303c	-	hypothetical protein
2236	 33.33	0	2434647..2435339	-	230	82752019	-	SAB2304c	-	6-carboxyhexanoate--CoA ligase
2237	 30.65	0	2435350..2436465	-	371	82752020	-	SAB2305c	-	hypothetical protein
2238	 33.43	0	2436443..2437450	-	335	82752021	bioB	SAB2306c	-	biotin synthase
2239	 33.70	0	2437452..2438810	-	452	82752022	bioA	SAB2307c	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
2240	 31.88	0	2438788..2439474	-	228	82752023	-	SAB2308c	-	dethiobiotin synthetase
2241	 31.45	0	2441663..2443360	-	565	82752024	-	SAB2310c	-	truncated ATP-binding ABC transporter
2242	 40.51	+2	2443573..2443767	-	64	82752025	-	SAB2311c	-	hypothetical protein
2243	 35.86	0	2443995..2444231	+	78	82752026	-	SAB2312	-	hypothetical protein
2244	 27.65	-1	2444233..2444619	-	128	82752027	-	SAB2313c	-	hypothetical protein
2245	 38.67	+1	2444887..2446029	+	380	82752028	-	SAB2314	-	glycerate kinase
2246	 31.97	0	2446089..2446748	+	219	82752029	-	SAB2315	-	hypothetical protein
2247	 34.90	0	2446931..2448142	+	403	82752030	-	SAB2316	-	transporter protein
2248	 35.86	0	2448265..2448738	-	157	82752031	-	SAB2317c	-	hypothetical protein
2249	 35.62	0	2448851..2449507	+	218	82752032	-	SAB2318	-	hypothetical protein
2250	 34.32	0	2449570..2450376	-	268	82752033	-	SAB2319c	-	hypothetical protein
2251	 35.18	0	2450662..2452071	+	469	82752034	-	SAB2320	-	amino acid ABC transporter
2252	 32.28	0	2452208..2454286	+	692	82752035	-	SAB2321	-	sodium hydrogen exchanger family protein
2253	 34.15	0	2454427..2456256	-	609	82752036	-	SAB2322c	-	hypothetical protein
2254	 31.53	0	2456488..2457987	+	499	82752037	-	SAB2323	-	drug resistance-involved membrane protein
2255	 36.89	+1	2458094..2458936	-	280	82752038	-	SAB2324c	-	hypothetical protein
2256	 35.04	0	2459278..2460213	-	311	82752039	-	SAB2325c	-	2-dehydropantoate 2-reductase
2257	 34.33	0	2460439..2461839	-	466	82752040	-	SAB2326c	-	transmembrane efflux protein
2258	 35.63	0	2462133..2462828	-	231	82752041	opuCD	SAB2327c	-	betaine-carnitine-choline ABC transporter
2259	 35.56	0	2462828..2463769	-	313	82752042	opuCC	SAB2328c	-	betaine-carnitine-choline ABC transporter
2260	 36.32	0	2463786..2464421	-	211	82752043	opuCB	SAB2329c	-	betaine-carnitine-choline ABC transporter
2261	 35.78	0	2464418..2465644	-	408	82752044	opuCA	SAB2330c	-	betaine-carnitine-choline ABC transporter
2262	 36.14	0	2467092..2468729	+	545	82752045	-	SAB2332	-	amino acid transporter permease
2263	 34.89	0	2468957..2470309	+	450	82752046	-	SAB2333	-	carboxylesterase
2264	 35.27	0	2470371..2471555	-	394	82752047	-	SAB2334c	-	membrane transporter
2265	 36.16	0	2471951..2472727	-	258	82752048	-	SAB2335c	-	hypothetical protein
2266	 33.63	0	2472720..2473382	-	220	82752049	-	SAB2336c	-	ATP-binding ABC transporter
2267	 27.91	-1	2473470..2473598	-	42	82752050	-	SAB2337c	-	hypothetical protein
2268	 37.51	+1	2473728..2474804	-	358	82752051	-	SAB2338c	-	endo-1,4-beta-glucanase
2269	 28.09	-1	2475160..2475426	-	88	82752052	-	SAB2339c	-	hypothetical protein
2270	 28.68	-1	2475426..2475683	-	85	82752053	-	SAB2340c	-	hypothetical protein
2271	 27.12	-1	2475807..2475983	-	58	82752054	-	SAB2341c	-	hypothetical protein
2272	 28.07	-1	2476042..2476497	+	151	82752055	-	SAB2342	-	lipoprotein
2273	 35.74	0	2476665..2478242	-	525	82752056	-	SAB2343c	-	glutamate synthase-ferredoxin large subunit
2274	 30.27	0	2478436..2479185	+	249	82752057	-	SAB2344	-	hypothetical protein
2275	 36.52	+1	2479409..2480602	-	397	82752058	-	SAB2345c	-	antibiotic resistance transport protein
2276	 35.47	0	2480614..2481363	-	249	82752059	opp1F	SAB2346c	-	oligopeptide transporter ATPase subunit
2277	 35.05	0	2481356..2482171	-	271	82752060	opp1D	SAB2347c	-	oligopeptide transporter ATPase subunit
2278	 35.75	0	2482168..2483037	-	289	82752061	opp1C	SAB2348c	-	oligopeptide transporter permease
2279	 33.65	0	2483034..2483969	-	311	82752062	opp1B	SAB2349c	-	oligopeptide transporter permease
2280	 34.90	0	2483982..2485580	-	532	82752063	opp1A	SAB2350c	-	oligopeptide transporter substrate binding protein
2281	 36.10	0	2485723..2487024	-	433	82752064	-	SAB2351c	-	hypothetical protein
2282	 33.33	0	2487017..2487835	-	272	82752065	-	SAB2352c	-	hypothetical protein
2283	 35.40	0	2487846..2488667	-	273	82752066	-	SAB2353c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.