IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
172	 38.99	+1	226964..228412	-	482	82749949	-	SAB0181c	-	phosphotransferase system enzyme II
173	 39.42	+1	228854..229789	+	311	82749950	-	SAB0182	-	inosine-uridine preferring nucleoside hydrolase family protein
174	 34.83	0	232214..232681	+	155	82749951	-	SAB0184	-	phosphotransferase system enzyme
175	 32.42	0	232704..232922	+	72	82749952	-	SAB0185	-	phosphotransferase system galactitol-specific enzyme II, B component
176	 36.75	+1	233205..234464	+	419	82749953	-	SAB0186	-	phosphotransferase system galactitol-specific enzyme II, C component
177	 36.65	+1	234482..235537	+	351	82749954	-	SAB0187	-	zinc-binding sorbitol dehydrogenase
178	 30.61	0	235539..235685	+	48	82749955	-	SAB0188	-	hypothetical protein
179	 37.55	+1	235709..236752	+	347	82749956	-	SAB0189	-	zinc-binding sorbitol dehydrogenase
180	 32.78	0	237280..237996	+	238	82749957	-	SAB0190	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
181	 32.63	0	239037..240731	+	564	82749958	-	SAB0192	-	teichoic acid biosynthesis protein B
182	 33.76	0	241159..242328	+	389	82749959	-	SAB0193	-	teichoic acid biosynthesis protein F
183	 32.50	0	242604..243320	+	238	82749960	ispD	SAB0194	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
184	 33.24	0	243313..244338	+	341	82749961	-	SAB0195	-	xylitol dehydrogenase
185	 32.03	0	244360..246048	+	562	82749962	-	SAB0196	-	teichoic acid biosynthesis protein B
186	 32.35	0	246081..247802	+	573	82749963	-	SAB0197	-	glycosyl transferase
187	 32.15	0	247946..248620	+	224	82749964	scdA	SAB0198	-	cell wall biosynthesis protein ScdA
188	 35.67	0	248866..250620	+	584	82749965	lytS	SAB0199	-	two-component sensor histidine kinase
189	 31.31	0	250623..251363	+	246	82749966	lytR	SAB0200	-	two-component sensor histidine kinase
190	 34.46	0	251476..251919	+	147	82749967	lrgA	SAB0201	-	murein hydrolase regulator LrgA
191	 36.47	+1	251912..252613	+	233	82749968	lrgB	SAB0202	-	antiholin-like protein LrgB
192	 33.19	0	252721..253425	-	234	82749969	-	SAB0203c	-	GntR family transcriptional regulator
193	 34.85	0	253574..254365	+	263	82749970	-	SAB0204	-	PTS system transport protein
194	 36.52	+1	254405..255817	+	470	82749971	bglA	SAB0205	-	6-phospho-beta-glucosidase
195	 40.48	+2	255881..256174	+	97	82749972	-	SAB0206	-	hypothetical protein
196	 34.12	0	256336..257097	-	253	82749973	-	SAB0207c	-	hypothetical protein
197	 37.49	+1	257347..258261	-	304	82749974	-	SAB0208c	-	ribokinase
198	 32.84	0	258289..258693	-	134	82749975	-	SAB0209c	-	D-ribose pyranase
199	 37.87	+1	258708..259589	-	293	82749976	-	SAB0210c	-	ribose transporter
200	 37.24	+1	259821..260819	-	332	82749977	-	SAB0211c	-	ribose operon transcriptional regulator
201	 26.41	-2	261200..261589	+	129	82749978	-	SAB0212	-	hypothetical protein
202	 37.25	+1	261718..263094	-	458	82749979	-	SAB0213c	-	membrane transporter
203	 35.25	0	263328..264320	+	330	82749980	-	SAB0214	-	penicillin-related choloylglycine hydrolase
204	 39.43	+1	264640..265590	+	316	82749981	lytM	SAB0215	-	peptidoglycan hydrolase
205	 31.67	0	265642..266301	-	219	82749982	-	SAB0216c	-	ABC transporter ATP-binding protein
206	 31.70	0	266315..267235	-	306	82749983	-	SAB0217c	-	hypothetical protein
207	 32.56	0	267232..268398	-	388	82749984	-	SAB0218c	-	hypothetical protein
208	 28.61	-1	268466..269989	-	507	82749985	-	SAB0219c	-	hypothetical protein
209	 28.57	-1	270492..270911	+	139	82749986	-	SAB0220	-	hypothetical protein
210	 27.53	-1	270945..271547	+	200	82749987	-	SAB0221	-	hypothetical protein
211	 38.10	+1	272817..273110	+	97	82749988	-	SAB0223	-	hypothetical protein
212	 30.59	0	273193..276222	+	1009	82749989	-	SAB0224	-	hypothetical protein
213	 29.63	-1	276651..276893	+	80	82749990	-	SAB0226	-	hypothetical protein
214	 29.81	0	276906..278240	+	444	82749991	-	SAB0227	-	hypothetical protein
215	 34.10	0	278262..282701	+	1479	82749992	-	SAB0228	-	DNA segregation ATPase and related protein
216	 31.04	0	282731..283123	+	130	82749993	-	SAB0229	-	hypothetical protein
217	 38.41	+1	283139..283453	+	104	82749994	-	SAB0230	-	hypothetical protein
218	 29.20	-1	283450..284127	+	225	82749995	-	SAB0231	-	hypothetical protein
219	 38.36	+1	284127..284444	+	105	82749996	-	SAB0232	-	hypothetical protein
220	 27.85	-1	286309..286800	+	163	82749997	-	SAB0234	-	hypothetical protein
221	 26.90	-1	287002..287685	+	227	82749998	-	SAB0235	-	hypothetical protein
222	 27.40	-1	287954..288442	+	162	82749999	-	SAB0236	-	hypothetical protein
223	 31.54	0	288660..289160	+	166	82750000	-	SAB0237	-	hypothetical protein
224	 30.74	0	289171..289671	+	166	82750001	-	SAB0238	-	hypothetical protein
225	 31.20	0	289655..290170	+	171	82750002	-	SAB0239	-	hypothetical protein
226	 26.19	-2	290773..291150	+	125	82750003	-	SAB0240	-	hypothetical protein
227	 31.20	0	291321..291695	+	124	82750004	-	SAB0241	-	hypothetical protein
228	 33.09	0	291949..292770	-	273	82750005	-	SAB0242c	-	formate/nitrate transporter
229	 35.78	0	293009..294316	-	435	82750006	-	SAB0243c	-	branched chain amino acid ABC transporter carrier protein
230	 32.66	0	294899..295789	+	296	82750007	-	SAB0244	-	hypothetical protein
231	 32.86	0	296038..297087	+	349	82750008	-	SAB0245	-	ABC transporter permease
232	 34.07	0	297100..297777	+	225	82750009	-	SAB0246	-	ABC transporter ATP-binding protein
233	 38.82	+1	297979..299016	+	345	82750010	-	SAB0247	-	perfringolysin O regulatory protein
234	 34.41	0	299359..300477	+	372	82750011	-	SAB0248	-	carbohydrate kinase
235	 37.55	+1	300452..301375	+	307	82750012	-	SAB0249	-	hypothetical protein
236	 33.09	0	301386..302606	+	406	82750013	-	SAB0250	-	nucleoside transporter permease
237	 36.07	0	302711..304243	-	510	82750014	-	SAB0251c	-	transport protein
238	 35.15	0	304283..305164	-	293	82750015	-	SAB0252c	-	N-acetylneuraminate lyase
239	 36.66	+1	305281..306183	+	300	82750016	-	SAB0253	-	kinase
240	 33.46	0	306460..307260	-	266	82750017	-	SAB0254c	-	hypothetical protein
241	 37.67	+1	307400..308068	+	222	82750018	-	SAB0255	-	N-acetylmannosamine-6-phosphate 2-epimerase
242	 35.46	0	308198..309559	-	453	82750019	-	SAB0256c	-	hypothetical protein
243	 37.21	+1	309929..311887	+	652	82750020	geh	SAB0257	-	glycerol ester hydrolase
244	 32.01	0	311957..313162	-	401	82750021	-	SAB0258c	-	phage-related integrase
245	 27.68	-1	313262..313915	-	217	82750022	-	SAB0259c	-	hypothetical protein
246	 34.51	0	314357..314611	+	84	82750023	-	SAB0260	-	phage-like protein
247	 34.08	0	314611..316077	+	488	82750024	-	SAB0261	-	phage-like protein
248	 31.03	0	316077..316466	+	129	82750025	-	SAB0262	-	phage-like protein
249	 30.30	0	316459..316623	+	54	82750026	-	SAB0263	-	phage-like protein
250	 29.00	-1	316669..316968	+	99	82750027	-	SAB0264	-	phage-like protein
251	 31.95	0	317562..318794	+	410	82750028	-	SAB0265	-	type-I specificity determinant subunit
252	 32.34	0	318846..319148	+	100	82750029	-	SAB0266	-	phage-related holin
253	 36.67	+1	320847..321056	+	69	82750030	-	SAB0268	-	hypothetical protein
254	 24.83	-2	321668..322255	+	195	82750031	-	SAB0269	-	hypothetical protein
255	 28.07	-1	322252..322707	+	151	82750032	-	SAB0270	-	hypothetical protein
256	 34.66	0	323332..324159	-	275	82750033	-	SAB0271c	-	hypothetical protein
257	 39.25	+1	324232..325431	-	399	82750034	-	SAB0272c	-	trimethylamine dehydrogenase
258	 37.92	+1	325733..326734	+	333	82750035	-	SAB0273	-	luciferase family protein
259	 36.64	+1	326768..327100	+	110	82750036	-	SAB0274	-	glycine cleavage system H protein
260	 36.33	+1	327101..327901	+	266	82750037	-	SAB0275	-	hypothetical protein
261	 37.97	+1	327888..328835	+	315	82750038	-	SAB0276	-	hypothetical protein
262	 34.02	0	328813..329835	+	340	82750039	-	SAB0277	-	lipoate-protein ligase
263	 38.08	+1	329979..331325	-	448	82750040	ulaA	SAB0278c	-	ascorbate-specific PTS system enzyme IIC
264	 36.14	0	331340..331624	-	94	82750041	-	SAB0279c	-	PTS system component
265	 35.81	0	331626..332069	-	147	82750042	-	SAB0280c	-	PTS system component
266	 34.25	0	332074..334029	-	651	82750043	-	SAB0281c	-	PTS system regulator
267	 27.48	-1	334016..334237	-	73	82750044	-	SAB0282c	-	hypothetical protein
268	 33.57	0	334241..334660	+	139	82750045	-	SAB0283	-	MarR family regulatory protein
269	 32.45	0	334767..336122	+	451	82750046	-	SAB0284	-	hypothetical protein
270	 28.80	-1	336229..336669	+	146	82750047	-	SAB0285	-	hypothetical protein
271	 36.79	+1	336753..338111	-	452	82750048	-	SAB0286c	-	glycerol-3-phosphate transporter
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.