IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2089	 32.45	0	2289045..2289953	-	302	82751872	fhuD2	SAB2156c	-	ferrichrome-binding protein
2090	 34.37	0	2290168..2291322	-	384	82751873	-	SAB2157c	-	butyryl-CoA dehydrogenase-like protein
2091	 34.29	0	2291448..2291552	-	34	82751874	-	SAB2158c	-	hypothetical protein
2092	 33.56	0	2291711..2292610	-	299	82751875	-	SAB2159c	-	urea transporter
2093	 40.59	+2	2292876..2293178	+	100	82751876	ureA	SAB2160	-	urease subunit gamma
2094	 36.50	+1	2293192..2293602	+	136	82751877	ureB	SAB2161	-	urease subunit beta
2095	 37.53	+1	2293599..2295314	+	571	82751878	ureC	SAB2162	-	urease subunit alpha
2096	 33.11	0	2295327..2295779	+	150	82751879	ureE	SAB2163	-	urease accessory protein UreE
2097	 32.61	0	2295772..2296461	+	229	82751880	ureF	SAB2164	-	urease accessory protein UreF
2098	 34.47	0	2296474..2297088	+	204	82751881	ureG	SAB2165	-	urease accessory protein UreG
2099	 30.82	0	2297088..2297924	+	278	82751882	ureD	SAB2166	-	urease accessory protein UreD
2100	 24.71	-2	2298113..2298460	-	115	82751883	sarR	SAB2167c	-	staphylococcal accessory regulator protein
2101	 27.22	-1	2298888..2299214	-	108	82751884	-	SAB2168c	-	hypothetical protein
2102	 27.82	-1	2299278..2300021	-	247	82751885	-	SAB2169c	-	hypothetical protein
2103	 28.07	-1	2300047..2302002	-	651	82751886	-	SAB2170c	-	transcriptional regulator
2104	 27.35	-1	2302406..2302522	+	38	82751887	-	SAB2171	-	hypothetical protein
2105	 38.58	+1	2302612..2303430	+	272	82751888	-	SAB2172	-	secretory antigen precursor
2106	 35.68	0	2303863..2305056	-	397	82751889	-	SAB2173c	-	hypothetical protein
2107	 33.15	0	2305359..2306441	-	360	82751890	-	SAB2174c	-	hypothetical protein
2108	 28.61	-1	2306689..2307111	+	140	82751891	-	SAB2175	-	hypothetical protein
2109	 38.12	+1	2307348..2307848	+	166	82751892	-	SAB2176	-	exported secretory antigen precursor
2110	 27.55	-1	2307859..2308152	+	97	82751893	-	SAB2177	-	hypothetical protein
2111	 35.64	0	2308209..2309162	+	317	82751894	-	SAB2178	-	dehydrogenase
2112	 33.33	0	2309331..2309831	+	166	82751895	-	SAB2179	-	transposase
2113	 29.45	-1	2309828..2310652	+	274	82751896	-	SAB2180	-	transposase
2114	 33.07	0	2310766..2311890	-	374	82751897	-	SAB2181c	-	hypothetical protein
2115	 31.79	0	2311963..2312157	-	64	82751898	-	SAB2182c	-	hypothetical protein
2116	 32.43	0	2312500..2313276	-	258	82751899	-	SAB2183c	-	autolysin E
2117	 27.38	-1	2313298..2313549	-	83	82751900	-	SAB2184c	-	hypothetical protein
2118	 30.17	0	2313825..2314298	-	157	82751901	-	SAB2185c	-	hypothetical protein
2119	 35.84	0	2314298..2317252	-	984	82751902	-	SAB2186c	-	formate dehydrogenase alpha subunit
2120	 34.60	0	2317855..2318802	-	315	82751903	-	SAB2187c	-	transcriptional regulator
2121	 32.21	0	2318935..2319732	-	265	82751904	-	SAB2188c	-	extragenic supressor protein
2122	 31.31	0	2320117..2320809	+	230	82751905	-	SAB2189	-	DeoR family regulatory protein
2123	 30.35	0	2320834..2321571	-	245	82751906	-	SAB2190c	-	hypothetical protein
2124	 24.85	-2	2321620..2321949	+	109	82751907	-	SAB2191	-	hypothetical protein
2125	 29.32	-1	2322394..2323266	+	290	82751908	-	SAB2192	-	transcriptional regulator
2126	 34.06	0	2323655..2325034	-	459	82751909	-	SAB2193c	-	amino acid permease
2127	 33.61	0	2325315..2325671	+	118	82751910	-	SAB2194	-	hypothetical protein
2128	 29.57	-1	2325668..2325853	+	61	82751911	-	SAB2195	-	hypothetical protein
2129	 32.29	0	2325949..2326140	-	63	82751912	-	SAB2196c	-	hypothetical protein
2130	 33.18	0	2326151..2326786	-	211	82751913	-	SAB2197c	-	hypothetical protein
2131	 34.20	0	2326861..2327778	-	305	82751914	-	SAB2198c	-	sodium-dependent transporter
2132	 30.13	0	2328046..2328576	+	176	82751915	-	SAB2199	-	hypothetical protein
2133	 35.70	0	2328642..2330246	-	534	82751916	-	SAB2200c	-	PTS system arbutin-like IIBC component
2134	 29.93	0	2330576..2331340	+	254	82751917	-	SAB2201	-	transcriptional regulator
2135	 32.94	0	2331398..2331904	-	168	82751918	-	SAB2202c	-	hypothetical protein
2136	 35.39	0	2332090..2333451	-	453	82751919	-	SAB2203c	-	Na+/H+ antiporter
2137	 28.77	-1	2333604..2334173	-	189	82751920	-	SAB2204c	-	hypothetical protein
2138	 39.34	+1	2334660..2335541	-	293	82751921	-	SAB2205c	-	oxidoreductase
2139	 37.52	+1	2335652..2336773	-	373	82751922	-	SAB2206c	-	peptidase
2140	 36.16	0	2337050..2338288	-	412	82751923	hutI	SAB2207c	-	imidazolonepropionase
2141	 39.35	+1	2338288..2339949	-	553	82751924	hutU	SAB2208c	-	urocanate hydratase
2142	 31.15	0	2340351..2340992	+	213	82751925	-	SAB2209	-	hypothetical protein
2143	 30.83	0	2341147..2342463	-	438	82751926	-	SAB2210c	-	transposase
2144	 36.75	+1	2342751..2343686	-	311	82751927	hutG	SAB2211c	-	formimidoylglutamase
2145	 32.78	0	2343976..2345232	+	418	82751928	-	SAB2212	-	hypothetical protein
2146	 33.77	0	2345297..2345983	-	228	82751929	-	SAB2213c	-	ribose 5-phosphate isomerase A
2147	 34.25	0	2346154..2346807	+	217	82751930	-	SAB2214	-	hypothetical protein
2148	 31.37	0	2347043..2348062	-	339	82751931	-	SAB2215c	-	epimerase
2149	 38.53	+1	2348092..2348418	-	108	82751932	-	SAB2216c	-	hypothetical protein
2150	 25.19	-2	2348467..2348601	-	44	82751933	-	SAB2217c	-	hypothetical protein
2151	 31.39	0	2348636..2349868	-	410	82751934	-	SAB2218c	-	hypothetical protein
2152	 34.67	0	2349861..2350760	-	299	82751935	-	SAB2219c	-	sodium ABC transporter ATP-binding protein
2153	 31.79	0	2350991..2351638	-	215	82751936	-	SAB2220c	-	hypothetical protein
2154	 29.86	0	2351806..2351949	+	47	82751937	-	SAB2221	-	hypothetical protein
2155	 37.44	+1	2352037..2352645	+	202	82751938	-	SAB2222	-	3-methyladenine DNA glycosylase
2156	 28.04	-1	2352646..2352834	+	62	82751939	-	SAB2223	-	3-methyladenine DNA glycosylase
2157	 32.84	0	2352982..2354190	+	402	82751940	-	SAB2224	-	sodium/glutamate symporter
2158	 37.62	+1	2354238..2355287	-	349	82751941	fni	SAB2225c	-	isopentenyl pyrophosphate isomerase
2159	 29.64	-1	2355318..2356265	-	315	82751942	-	SAB2226c	-	divalent cation transporter
2160	 31.91	0	2356362..2356853	+	163	82751943	-	SAB2227	-	hypothetical protein
2161	 31.19	0	2356850..2357269	+	139	82751944	-	SAB2228	-	hypothetical protein
2162	 32.90	0	2357379..2358299	-	306	82751945	-	SAB2229c	-	hypothetical protein
2163	 30.83	0	2358507..2359145	+	212	82751946	-	SAB2230	-	hypothetical protein
2164	 33.80	0	2359392..2361323	-	643	82751947	-	SAB2231c	-	multidrug ABC transporter
2165	 31.94	0	2361336..2361983	-	215	82751948	-	SAB2232c	-	hypothetical protein
2166	 28.65	-1	2362104..2362658	+	184	82751949	-	SAB2233	-	TetR family regulatory protein
2167	 33.66	0	2362884..2364092	-	402	82751950	tcaB	SAB2234c	-	bicyclomycin and teicoplanin resistance protein
2168	 31.74	0	2364361..2365743	-	460	82751951	tcaA	SAB2235c	-	bicyclomycin and teicoplanin resistance protein
2169	 28.73	-1	2365983..2366438	-	151	82751952	tcaR	SAB2236c	-	bicyclomycin resistance transcriptional regulator
2170	 31.06	0	2366633..2367601	+	322	82751953	-	SAB2237	-	hypothetical protein
2171	 34.68	0	2367832..2368497	-	221	82751954	-	SAB2238c	-	ABC transporter ATP-binding protein
2172	 30.40	0	2368497..2369552	-	351	82751955	-	SAB2239c	-	permease protein
2173	 35.26	0	2369688..2370362	+	224	82751956	-	SAB2240	-	two-component response regulator
2174	 31.30	0	2370355..2371728	+	457	82751957	-	SAB2241	-	two-component sensor histidine kinase sensor
2175	 28.15	-1	2371890..2372333	+	147	82751958	-	SAB2242	-	hypothetical protein
2176	 31.58	0	2372330..2372785	+	151	82751959	-	SAB2243	-	hypothetical protein
2177	 36.17	0	2372851..2374329	-	492	161777616	mqo	SAB2244c	-	malate:quinone oxidoreductase
2178	 32.52	0	2374710..2376308	-	532	82751961	lldP	SAB2245c	-	L-lactate permease
2179	 31.78	0	2376302..2376430	-	42	82751962	-	SAB2246c	-	hypothetical protein
2180	 32.38	0	2376625..2378298	+	557	82751963	-	SAB2247	-	hypothetical protein
2181	 29.68	-1	2378451..2379080	-	209	82751964	-	SAB2248c	-	hypothetical protein
2182	 31.78	0	2379394..2379909	-	171	82751965	-	SAB2249c	-	transcriptional regulator
2183	 36.62	+1	2380096..2381100	+	334	82751966	-	SAB2250	-	hypothetical protein
2184	 36.82	+1	2381146..2381547	-	133	82751967	-	SAB2251c	-	hypothetical protein
2185	 35.07	0	2381583..2382617	-	344	82751968	-	SAB2252c	-	thioredoxin reductase
2186	 30.79	0	2382849..2383280	-	143	82751969	-	SAB2253c	-	hypothetical protein
2187	 31.46	0	2383486..2384712	-	408	82751970	-	SAB2254c	-	hypothetical protein
2188	 30.93	0	2384873..2385496	+	207	82751971	-	SAB2255	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.