IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2043	 38.71	+1	2251966..2252151	-	61	161777617	rpsN	SAB2109c	-	30S ribosomal protein S14
2044	 34.26	0	2252174..2252713	-	179	82751827	rplE	SAB2110c	-	50S ribosomal protein L5
2045	 33.96	0	2252740..2253057	-	105	82751828	rplX	SAB2111c	-	50S ribosomal protein L24
2046	 40.65	+2	2253093..2253461	-	122	82751829	rplN	SAB2112c	-	50S ribosomal protein L14
2047	 30.30	0	2253493..2253756	-	87	82751830	rpsQ	SAB2113c	-	30S ribosomal protein S17
2048	 34.29	0	2253780..2253989	-	69	82751831	rpmC	SAB2114c	-	50S ribosomal protein L29
2049	 40.46	+2	2253979..2254413	-	144	82751832	rplP	SAB2115c	-	50S ribosomal protein L16
2050	 38.38	+1	2254416..2255069	-	217	82751833	rpsC	SAB2116c	-	30S ribosomal protein S3
2051	 37.29	+1	2255093..2255446	-	117	82751834	rplV	SAB2117c	-	50S ribosomal protein L22
2052	 37.63	+1	2255475..2255753	-	92	82751835	rpsS	SAB2118c	-	30S ribosomal protein S19
2053	 40.41	+2	2255820..2256653	-	277	82751836	rplB	SAB2119c	-	50S ribosomal protein L2
2054	 35.51	0	2256686..2256961	-	91	82751837	rplW	SAB2120c	-	50S ribosomal protein L23
2055	 38.94	+1	2256961..2257584	-	207	82751838	rplD	SAB2121c	-	50S ribosomal protein L4
2056	 38.01	+1	2257611..2258273	-	220	82751839	rplC	SAB2122c	-	50S ribosomal protein L3
2057	 37.54	+1	2258301..2258609	-	102	82751840	rpsJ	SAB2123c	-	30S ribosomal protein S10
2058	 29.29	-1	2258960..2259355	+	131	82751841	-	SAB2124	-	hypothetical protein
2059	 35.36	0	2259549..2260883	-	444	82751842	-	SAB2125c	-	permease family protein
2060	 32.09	0	2263317..2264204	+	295	82751843	-	SAB2127	-	hypothetical protein
2061	 36.11	0	2264407..2265270	+	287	82751844	glcU	SAB2128	-	glucose uptake protein
2062	 33.33	0	2265378..2265551	-	57	82751845	-	SAB2129c	-	hypothetical protein
2063	 32.34	0	2265822..2266730	-	302	82751846	-	SAB2130c	-	hypothetical protein
2064	 32.73	0	2266863..2267027	+	54	82751847	-	SAB2131	-	hypothetical protein
2065	 27.36	-1	2267272..2267589	+	105	82751848	-	SAB2132	-	hypothetical protein
2066	 33.90	0	2267776..2270943	-	1055	82751849	-	SAB2133c	-	acriflavin resistance transport protein
2067	 33.73	0	2271060..2272325	-	421	82751850	fmhB	SAB2134c	-	methicillin resistance factor peptidoglycan pentaglycine interpeptide biosynthetic protein
2068	 27.38	-1	2272714..2272965	+	83	82751851	-	SAB2135	-	hypothetical protein
2069	 29.93	0	2272957..2273721	-	254	82751852	-	SAB2136c	-	hypothetical protein
2070	 31.07	0	2273884..2274324	+	146	82751853	-	SAB2137	-	hypothetical protein
2071	 32.95	0	2274317..2275354	+	345	82751854	-	SAB2138	-	membrane transporter
2072	 29.34	-1	2275624..2275974	-	116	82751855	-	SAB2139c	-	hypothetical protein
2073	 33.63	0	2276497..2277519	-	340	82751856	moaA	SAB2140c	-	molybdenum cofactor biosynthesis protein A
2074	 32.17	0	2277539..2278138	-	199	82751857	mobA	SAB2141c	-	molybdopterin-guanine dinucleotide biosynthesis protein A
2075	 30.34	0	2278145..2278378	-	77	82751858	moaD	SAB2142c	-	molybdopterin converting factor small subunit
2076	 35.57	0	2278384..2278830	-	148	82751859	moaE	SAB2143c	-	molybdopterin converting factor small subunit
2077	 31.89	0	2278844..2279329	-	161	82751860	mobB	SAB2144c	-	molybdopterin-guanine dinucleotide biosynthesis protein
2078	 37.38	+1	2279326..2280585	-	419	82751861	moeA	SAB2145c	-	molybdopterin biosynthesis protein
2079	 38.59	+1	2280648..2281142	+	164	82751862	moaC	SAB2146	-	molybdenum cofactor biosynthesis protein C
2080	 37.67	+1	2281144..2281650	-	168	82751863	moaB	SAB2147c	-	molybdenum cofactor biosynthesis protein
2081	 34.33	0	2281681..2282685	-	334	82751864	moeB	SAB2148c	-	molybdopterin biosynthesis protein
2082	 33.00	0	2282854..2283459	-	201	82751865	modC	SAB2149c	-	molybdenum transport ATP-binding protein
2083	 34.67	0	2283460..2284131	-	223	82751866	modB	SAB2150c	-	molybdate transport permease protein
2084	 29.63	-1	2284145..2284927	-	260	82751867	modA	SAB2151c	-	molybdate-binding protein
2085	 34.09	0	2285217..2286014	+	265	82751868	-	SAB2152	-	formate dehydrogenase accessory protein
2086	 33.46	0	2286186..2286956	-	256	82751869	-	SAB2153c	-	hypothetical protein
2087	 34.41	0	2287028..2287582	-	184	82751870	-	SAB2154c	-	hypothetical protein
2088	 34.29	0	2287703..2288644	-	313	82751871	-	SAB2155c	-	inosine-uridine preferring nucleoside hydrolase
2089	 32.45	0	2289045..2289953	-	302	82751872	fhuD2	SAB2156c	-	ferrichrome-binding protein
2090	 34.37	0	2290168..2291322	-	384	82751873	-	SAB2157c	-	butyryl-CoA dehydrogenase-like protein
2091	 34.29	0	2291448..2291552	-	34	82751874	-	SAB2158c	-	hypothetical protein
2092	 33.56	0	2291711..2292610	-	299	82751875	-	SAB2159c	-	urea transporter
2093	 40.59	+2	2292876..2293178	+	100	82751876	ureA	SAB2160	-	urease subunit gamma
2094	 36.50	+1	2293192..2293602	+	136	82751877	ureB	SAB2161	-	urease subunit beta
2095	 37.53	+1	2293599..2295314	+	571	82751878	ureC	SAB2162	-	urease subunit alpha
2096	 33.11	0	2295327..2295779	+	150	82751879	ureE	SAB2163	-	urease accessory protein UreE
2097	 32.61	0	2295772..2296461	+	229	82751880	ureF	SAB2164	-	urease accessory protein UreF
2098	 34.47	0	2296474..2297088	+	204	82751881	ureG	SAB2165	-	urease accessory protein UreG
2099	 30.82	0	2297088..2297924	+	278	82751882	ureD	SAB2166	-	urease accessory protein UreD
2100	 24.71	-2	2298113..2298460	-	115	82751883	sarR	SAB2167c	-	staphylococcal accessory regulator protein
2101	 27.22	-1	2298888..2299214	-	108	82751884	-	SAB2168c	-	hypothetical protein
2102	 27.82	-1	2299278..2300021	-	247	82751885	-	SAB2169c	-	hypothetical protein
2103	 28.07	-1	2300047..2302002	-	651	82751886	-	SAB2170c	-	transcriptional regulator
2104	 27.35	-1	2302406..2302522	+	38	82751887	-	SAB2171	-	hypothetical protein
2105	 38.58	+1	2302612..2303430	+	272	82751888	-	SAB2172	-	secretory antigen precursor
2106	 35.68	0	2303863..2305056	-	397	82751889	-	SAB2173c	-	hypothetical protein
2107	 33.15	0	2305359..2306441	-	360	82751890	-	SAB2174c	-	hypothetical protein
2108	 28.61	-1	2306689..2307111	+	140	82751891	-	SAB2175	-	hypothetical protein
2109	 38.12	+1	2307348..2307848	+	166	82751892	-	SAB2176	-	exported secretory antigen precursor
2110	 27.55	-1	2307859..2308152	+	97	82751893	-	SAB2177	-	hypothetical protein
2111	 35.64	0	2308209..2309162	+	317	82751894	-	SAB2178	-	dehydrogenase
2112	 33.33	0	2309331..2309831	+	166	82751895	-	SAB2179	-	transposase
2113	 29.45	-1	2309828..2310652	+	274	82751896	-	SAB2180	-	transposase
2114	 33.07	0	2310766..2311890	-	374	82751897	-	SAB2181c	-	hypothetical protein
2115	 31.79	0	2311963..2312157	-	64	82751898	-	SAB2182c	-	hypothetical protein
2116	 32.43	0	2312500..2313276	-	258	82751899	-	SAB2183c	-	autolysin E
2117	 27.38	-1	2313298..2313549	-	83	82751900	-	SAB2184c	-	hypothetical protein
2118	 30.17	0	2313825..2314298	-	157	82751901	-	SAB2185c	-	hypothetical protein
2119	 35.84	0	2314298..2317252	-	984	82751902	-	SAB2186c	-	formate dehydrogenase alpha subunit
2120	 34.60	0	2317855..2318802	-	315	82751903	-	SAB2187c	-	transcriptional regulator
2121	 32.21	0	2318935..2319732	-	265	82751904	-	SAB2188c	-	extragenic supressor protein
2122	 31.31	0	2320117..2320809	+	230	82751905	-	SAB2189	-	DeoR family regulatory protein
2123	 30.35	0	2320834..2321571	-	245	82751906	-	SAB2190c	-	hypothetical protein
2124	 24.85	-2	2321620..2321949	+	109	82751907	-	SAB2191	-	hypothetical protein
2125	 29.32	-1	2322394..2323266	+	290	82751908	-	SAB2192	-	transcriptional regulator
2126	 34.06	0	2323655..2325034	-	459	82751909	-	SAB2193c	-	amino acid permease
2127	 33.61	0	2325315..2325671	+	118	82751910	-	SAB2194	-	hypothetical protein
2128	 29.57	-1	2325668..2325853	+	61	82751911	-	SAB2195	-	hypothetical protein
2129	 32.29	0	2325949..2326140	-	63	82751912	-	SAB2196c	-	hypothetical protein
2130	 33.18	0	2326151..2326786	-	211	82751913	-	SAB2197c	-	hypothetical protein
2131	 34.20	0	2326861..2327778	-	305	82751914	-	SAB2198c	-	sodium-dependent transporter
2132	 30.13	0	2328046..2328576	+	176	82751915	-	SAB2199	-	hypothetical protein
2133	 35.70	0	2328642..2330246	-	534	82751916	-	SAB2200c	-	PTS system arbutin-like IIBC component
2134	 29.93	0	2330576..2331340	+	254	82751917	-	SAB2201	-	transcriptional regulator
2135	 32.94	0	2331398..2331904	-	168	82751918	-	SAB2202c	-	hypothetical protein
2136	 35.39	0	2332090..2333451	-	453	82751919	-	SAB2203c	-	Na+/H+ antiporter
2137	 28.77	-1	2333604..2334173	-	189	82751920	-	SAB2204c	-	hypothetical protein
2138	 39.34	+1	2334660..2335541	-	293	82751921	-	SAB2205c	-	oxidoreductase
2139	 37.52	+1	2335652..2336773	-	373	82751922	-	SAB2206c	-	peptidase
2140	 36.16	0	2337050..2338288	-	412	82751923	hutI	SAB2207c	-	imidazolonepropionase
2141	 39.35	+1	2338288..2339949	-	553	82751924	hutU	SAB2208c	-	urocanate hydratase
2142	 31.15	0	2340351..2340992	+	213	82751925	-	SAB2209	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.