IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1966	 33.57	0	2164066..2164923	-	285	82751749	-	SAB2032c	-	hypothetical protein
1967	 34.74	0	2164991..2165773	-	260	82751750	-	SAB2033c	-	ABC transporter ATP-binding protein
1968	 35.27	0	2166005..2167810	-	601	82751751	glmS	SAB2034c	-	D-fructose-6-phosphate amidotransferase
1969	 21.26	-2	2168260..2168433	+	57	82751752	-	SAB2035	-	hypothetical protein
1970	 35.61	0	2168491..2170029	+	512	82751753	mtlA	SAB2036	-	PTS system mannitol-specific IIBC component
1971	 33.10	0	2170064..2172196	+	710	82751754	-	SAB2037	-	transcription antiterminator
1972	 35.86	0	2172208..2172642	+	144	82751755	mtlF	SAB2038	-	PTS system mannitol-specific IIA component
1973	 33.06	0	2172642..2173748	+	368	82751756	mtlD	SAB2039	-	mannitol-1-phosphate 5-dehydrogenase
1974	 35.64	0	2174067..2180000	-	1977	82751757	fmtB	SAB2040c	-	truncated methicillin resistance-related surface protein
1975	 34.44	0	2180278..2181633	-	451	82751758	-	SAB2041c	-	phosphoglucosamine-mutase
1976	 30.01	0	2181660..2182592	-	310	82751759	-	SAB2042c	-	hypothetical protein
1977	 33.70	0	2182594..2183403	-	269	82751760	-	SAB2043c	-	hypothetical protein
1978	 31.57	0	2183592..2184500	-	302	82751761	rocF	SAB2044c	-	arginase
1979	 29.33	-1	2184629..2185453	-	274	82751762	-	SAB2045c	-	transposase
1980	 33.33	0	2185450..2185950	-	166	82751763	-	SAB2046c	-	transposase
1981	 35.31	0	2192150..2193214	-	354	82751764	-	SAB2047c	-	multidrug resistance protein
1982	 33.82	0	2193362..2194807	-	481	82751765	-	SAB2048c	-	multidrug resistance protein
1983	 26.16	-2	2195127..2195600	-	157	82751766	-	SAB2049c	-	hypothetical protein
1984	 30.13	0	2195699..2197042	-	447	82751767	-	SAB2050c	-	drug resistance-involved transporter
1985	 31.30	0	2197215..2197901	-	228	82751768	-	SAB2051c	-	hemolysin
1986	 30.81	0	2197917..2199104	-	395	82751769	-	SAB2052c	-	hypothetical protein
1987	 33.53	0	2199148..2199663	-	171	82751770	-	SAB2053c	-	hypothetical protein
1988	 30.65	0	2199841..2200101	+	86	82751771	-	SAB2054	-	hypothetical protein
1989	 36.03	0	2200233..2201603	-	456	82751772	-	SAB2055c	-	hypothetical protein
1990	 33.33	0	2201838..2202806	-	322	82751773	-	SAB2056c	-	ferrichrome ABC transporter
1991	 34.59	0	2202803..2203834	-	343	82751774	-	SAB2057c	-	ferrichrome ABC transporter
1992	 30.97	0	2203846..2204859	-	337	82751775	-	SAB2058c	-	ferrichrome ABC transporter lipoprotein
1993	 30.35	0	2205222..2206292	-	356	82751776	-	SAB2059c	-	hypothetical protein
1994	 32.54	0	2206299..2208056	-	585	82751777	-	SAB2060c	-	hypothetical protein
1995	 31.99	0	2208043..2209236	-	397	82751778	-	SAB2061c	-	membrane transporter
1996	 32.68	0	2209338..2211314	+	658	82751779	-	SAB2062	-	hypothetical protein
1997	 32.16	0	2211474..2211983	-	169	82751780	asp23	SAB2063c	-	alkaline shock protein 23
1998	 30.42	0	2212046..2212285	-	79	82751781	-	SAB2064c	-	hypothetical protein
1999	 32.66	0	2212298..2212894	-	198	82751782	-	SAB2065c	-	hypothetical protein
2000	 35.70	0	2213008..2214570	-	520	82751783	opuD	SAB2066c	-	glycine betaine transporter
2001	 33.53	0	2214877..2215884	-	335	82751784	-	SAB2067c	-	hypothetical protein
2002	 37.51	+1	2216116..2217120	-	334	82751785	-	SAB2068c	-	quinone oxidoreductase
2003	 34.01	0	2217399..2218283	-	294	82751786	-	SAB2069c	-	hypothetical protein
2004	 34.89	0	2218534..2219946	-	470	82751787	lacG	SAB2070c	-	6-phospho-beta-galactosidase
2005	 35.55	0	2219964..2221676	-	570	82751788	lacE	SAB2071c	-	PTS system lactose-specific IIBC component
2006	 35.90	0	2221682..2221993	-	103	82751789	lacF	SAB2072c	-	PTS system, lactose-specific IIA component
2007	 34.76	0	2222015..2222995	-	326	82751790	lacD	SAB2073c	-	tagatose 1,6-diphosphate aldolase
2008	 35.58	0	2222999..2223931	-	310	82751791	lacC	SAB2074c	-	tagatose-6-phosphate kinase
2009	 34.30	0	2223944..2224459	-	171	82751792	lacB	SAB2075c	-	galactose-6-phosphate isomerase subunit LacB
2010	 36.83	+1	2224476..2224904	-	142	82751793	lacA	SAB2076c	-	galactose-6-phosphate isomerase subunit LacA
2011	 33.73	0	2225271..2226026	-	251	82751794	lacR	SAB2077c	-	lactose phosphotransferase system repressor
2012	 36.75	+1	2226277..2227008	+	243	82751795	-	SAB2078	-	NAD-dependent deacetylase
2013	 23.14	-2	2227462..2227932	-	156	82751796	-	SAB2079c	-	hypothetical protein
2014	 33.10	0	2228539..2229387	-	282	82751797	-	SAB2080c	-	oxidoreductase
2015	 30.34	0	2229607..2229873	-	88	82751798	-	SAB2081c	-	MerR family transcriptional regulator
2016	 33.37	0	2230263..2232692	+	809	82751799	hysA2	SAB2082	-	hyaluronate lyase
2017	 25.48	-2	2232866..2233795	-	309	82751800	-	SAB2083c	-	transcriptional regulator
2018	 28.84	-1	2233832..2234521	+	229	82751801	-	SAB2084	-	hypothetical protein
2019	 31.22	0	2234708..2235133	+	141	82751802	-	SAB2085	-	hypothetical protein
2020	 33.90	0	2235509..2236213	-	234	82751803	-	SAB2086c	-	alpha-acetolactate decarboxylase
2021	 35.14	0	2236250..2237914	-	554	82751804	-	SAB2087c	-	acetolactate synthase
2022	 35.29	0	2238209..2238361	+	50	82751805	-	SAB2088	-	hypothetical protein
2023	 32.78	0	2239118..2239297	-	59	82751806	-	SAB2089c	-	hypothetical protein
2024	 40.60	+2	2239799..2240197	-	132	82751807	rpsI	SAB2090c	-	30S ribosomal protein S9
2025	 36.53	+1	2240211..2240648	-	145	82751808	rplM	SAB2091c	-	50S ribosomal protein L13
2026	 34.20	0	2240887..2241690	-	267	82751809	truA	SAB2092c	-	tRNA pseudouridine synthase A
2027	 31.97	0	2241695..2242501	-	268	82751810	-	SAB2093c	-	cobalt ABC transporter permease
2028	 34.49	0	2242491..2243351	-	286	82751811	-	SAB2094c	-	cobalt transporter ATP-binding subunit
2029	 34.42	0	2243348..2244268	-	306	82751812	-	SAB2095c	-	cobalt transporter ATP-binding subunit
2030	 37.40	+1	2244694..2245062	-	122	82751813	rplQ	SAB2096c	-	50S ribosomal protein L17
2031	 33.76	0	2245079..2246023	-	314	82751814	rpoA	SAB2097c	-	DNA-directed RNA polymerase subunit alpha
2032	 40.00	+2	2246098..2246487	-	129	82751815	rpsK	SAB2098c	-	30S ribosomal protein S11
2033	 39.07	+1	2246511..2246876	-	121	82751816	rpsM	SAB2099c	-	30S ribosomal protein S13
2034	 33.33	0	2247044..2247262	-	72	82751817	infA	SAB2100c	-	translation initiation factor IF-1
2035	 35.34	0	2247455..2248102	-	215	82751818	adk	SAB2101c	-	adenylate kinase
2036	 34.49	0	2248119..2249411	-	430	82751819	secY	SAB2102c	-	preprotein translocase subunit SecY
2037	 39.00	+1	2249411..2249851	-	146	82751820	rplO	SAB2103c	-	50S ribosomal protein L15
2038	 35.56	0	2249868..2250047	-	59	82751821	rpmD	SAB2104c	-	50S ribosomal protein L30
2039	 40.72	+2	2250064..2250564	-	166	82751822	rpsE	SAB2105c	-	30S ribosomal protein S5
2040	 35.56	0	2250585..2250944	-	119	82751823	rplR	SAB2106c	-	50S ribosomal protein L18
2041	 35.01	0	2250975..2251511	-	178	82751824	rplF	SAB2107c	-	50S ribosomal protein L6
2042	 34.34	0	2251536..2251934	-	132	82751825	rpsH	SAB2108c	-	30S ribosomal protein S8
2043	 38.71	+1	2251966..2252151	-	61	161777617	rpsN	SAB2109c	-	30S ribosomal protein S14
2044	 34.26	0	2252174..2252713	-	179	82751827	rplE	SAB2110c	-	50S ribosomal protein L5
2045	 33.96	0	2252740..2253057	-	105	82751828	rplX	SAB2111c	-	50S ribosomal protein L24
2046	 40.65	+2	2253093..2253461	-	122	82751829	rplN	SAB2112c	-	50S ribosomal protein L14
2047	 30.30	0	2253493..2253756	-	87	82751830	rpsQ	SAB2113c	-	30S ribosomal protein S17
2048	 34.29	0	2253780..2253989	-	69	82751831	rpmC	SAB2114c	-	50S ribosomal protein L29
2049	 40.46	+2	2253979..2254413	-	144	82751832	rplP	SAB2115c	-	50S ribosomal protein L16
2050	 38.38	+1	2254416..2255069	-	217	82751833	rpsC	SAB2116c	-	30S ribosomal protein S3
2051	 37.29	+1	2255093..2255446	-	117	82751834	rplV	SAB2117c	-	50S ribosomal protein L22
2052	 37.63	+1	2255475..2255753	-	92	82751835	rpsS	SAB2118c	-	30S ribosomal protein S19
2053	 40.41	+2	2255820..2256653	-	277	82751836	rplB	SAB2119c	-	50S ribosomal protein L2
2054	 35.51	0	2256686..2256961	-	91	82751837	rplW	SAB2120c	-	50S ribosomal protein L23
2055	 38.94	+1	2256961..2257584	-	207	82751838	rplD	SAB2121c	-	50S ribosomal protein L4
2056	 38.01	+1	2257611..2258273	-	220	82751839	rplC	SAB2122c	-	50S ribosomal protein L3
2057	 37.54	+1	2258301..2258609	-	102	82751840	rpsJ	SAB2123c	-	30S ribosomal protein S10
2058	 29.29	-1	2258960..2259355	+	131	82751841	-	SAB2124	-	hypothetical protein
2059	 35.36	0	2259549..2260883	-	444	82751842	-	SAB2125c	-	permease family protein
2060	 32.09	0	2263317..2264204	+	295	82751843	-	SAB2127	-	hypothetical protein
2061	 36.11	0	2264407..2265270	+	287	82751844	glcU	SAB2128	-	glucose uptake protein
2062	 33.33	0	2265378..2265551	-	57	82751845	-	SAB2129c	-	hypothetical protein
2063	 32.34	0	2265822..2266730	-	302	82751846	-	SAB2130c	-	hypothetical protein
2064	 32.73	0	2266863..2267027	+	54	82751847	-	SAB2131	-	hypothetical protein
2065	 27.36	-1	2267272..2267589	+	105	82751848	-	SAB2132	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.