IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1936	 35.19	0	2132461..2133537	-	358	82751719	prfA	SAB2002c	-	peptide chain release factor 1
1937	 36.83	+1	2133538..2134137	-	199	82751720	-	SAB2003c	-	thymidine kinase
1938	 35.69	0	2134484..2134738	-	84	82751721	rpmE2	SAB2004c	-	50S ribosomal protein L31 type B
1939	 35.61	0	2134856..2136172	-	438	82751722	rho	SAB2005c	-	transcription termination factor Rho
1940	 36.69	+1	2136419..2137846	-	475	82751723	-	SAB2006c	-	aldehyde dehydrogenase
1941	 35.40	0	2138085..2138423	-	112	82751724	-	SAB2007c	-	hypothetical protein
1942	 34.60	0	2138509..2139768	-	419	82751725	murA2	SAB2008c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1943	 36.59	+1	2140234..2141094	-	286	82751726	-	SAB2009c	-	fructose-bisphosphate aldolase
1944	 31.61	0	2141312..2141833	+	173	82751727	-	SAB2010	-	hypothetical protein
1945	 34.08	0	2141942..2143552	-	536	82751728	pyrG	SAB2011c	-	CTP synthetase
1946	 31.26	0	2143888..2144418	-	176	82751729	rpoE	SAB2012c	-	DNA-directed RNA polymerase subunit delta
1947	 32.98	0	2144530..2145390	-	286	82751730	-	SAB2013c	-	hypothetical protein
1948	 36.94	+1	2145815..2146618	+	267	82751731	-	SAB2014	-	pantothenate kinase
1949	 32.29	0	2146748..2147419	-	223	82751732	-	SAB2015c	-	hypothetical protein
1950	 33.75	0	2147818..2149011	-	397	82751733	-	SAB2016c	-	hypothetical protein
1951	 36.79	+1	2149011..2150195	-	394	82751734	-	SAB2017c	-	amidase
1952	 33.55	0	2150506..2150976	+	156	82751735	luxS	SAB2018	-	S-ribosylhomocysteinase
1953	 31.91	0	2151128..2151478	-	116	82751736	-	SAB2019c	-	hypothetical protein
1954	 36.41	+1	2151492..2152793	-	433	82751737	pyn	SAB2020c	-	pyrimidine-nucleoside phosphorylase
1955	 40.42	+2	2153073..2153735	-	220	82751738	deoC2	SAB2021c	-	deoxyribose-phosphate aldolase
1956	 34.60	0	2154049..2154759	+	236	82751739	deoD	SAB2022	-	purine nucleoside phosphorylase
1957	 32.66	0	2154880..2155323	-	147	82751740	-	SAB2023c	-	general stress protein 20U
1958	 32.37	0	2155523..2155936	-	137	82751741	-	SAB2024c	-	hypothetical protein
1959	 31.66	0	2156394..2157767	-	457	82751742	-	SAB2025c	-	hypothetical protein
1960	 35.50	0	2158441..2158671	-	76	82751743	-	SAB2026c	-	hypothetical protein
1961	 34.19	0	2158702..2159640	-	312	82751744	-	SAB2027c	-	mannose-6-phosphate isomerase
1962	 34.38	0	2160076..2160741	-	221	82751745	-	SAB2028c	-	hypothetical protein
1963	 34.27	0	2160893..2161213	+	106	82751746	czrA	SAB2029	-	zinc and cobalt transport repressor protein
1964	 33.33	0	2161215..2162195	+	326	82751747	czrB	SAB2030	-	cation-efflux system membrane protein
1965	 27.18	-1	2162460..2163515	+	351	82751748	-	SAB2031	-	membrane-embedded lytic regulatory protein
1966	 33.57	0	2164066..2164923	-	285	82751749	-	SAB2032c	-	hypothetical protein
1967	 34.74	0	2164991..2165773	-	260	82751750	-	SAB2033c	-	ABC transporter ATP-binding protein
1968	 35.27	0	2166005..2167810	-	601	82751751	glmS	SAB2034c	-	D-fructose-6-phosphate amidotransferase
1969	 21.26	-2	2168260..2168433	+	57	82751752	-	SAB2035	-	hypothetical protein
1970	 35.61	0	2168491..2170029	+	512	82751753	mtlA	SAB2036	-	PTS system mannitol-specific IIBC component
1971	 33.10	0	2170064..2172196	+	710	82751754	-	SAB2037	-	transcription antiterminator
1972	 35.86	0	2172208..2172642	+	144	82751755	mtlF	SAB2038	-	PTS system mannitol-specific IIA component
1973	 33.06	0	2172642..2173748	+	368	82751756	mtlD	SAB2039	-	mannitol-1-phosphate 5-dehydrogenase
1974	 35.64	0	2174067..2180000	-	1977	82751757	fmtB	SAB2040c	-	truncated methicillin resistance-related surface protein
1975	 34.44	0	2180278..2181633	-	451	82751758	-	SAB2041c	-	phosphoglucosamine-mutase
1976	 30.01	0	2181660..2182592	-	310	82751759	-	SAB2042c	-	hypothetical protein
1977	 33.70	0	2182594..2183403	-	269	82751760	-	SAB2043c	-	hypothetical protein
1978	 31.57	0	2183592..2184500	-	302	82751761	rocF	SAB2044c	-	arginase
1979	 29.33	-1	2184629..2185453	-	274	82751762	-	SAB2045c	-	transposase
1980	 33.33	0	2185450..2185950	-	166	82751763	-	SAB2046c	-	transposase
1981	 35.31	0	2192150..2193214	-	354	82751764	-	SAB2047c	-	multidrug resistance protein
1982	 33.82	0	2193362..2194807	-	481	82751765	-	SAB2048c	-	multidrug resistance protein
1983	 26.16	-2	2195127..2195600	-	157	82751766	-	SAB2049c	-	hypothetical protein
1984	 30.13	0	2195699..2197042	-	447	82751767	-	SAB2050c	-	drug resistance-involved transporter
1985	 31.30	0	2197215..2197901	-	228	82751768	-	SAB2051c	-	hemolysin
1986	 30.81	0	2197917..2199104	-	395	82751769	-	SAB2052c	-	hypothetical protein
1987	 33.53	0	2199148..2199663	-	171	82751770	-	SAB2053c	-	hypothetical protein
1988	 30.65	0	2199841..2200101	+	86	82751771	-	SAB2054	-	hypothetical protein
1989	 36.03	0	2200233..2201603	-	456	82751772	-	SAB2055c	-	hypothetical protein
1990	 33.33	0	2201838..2202806	-	322	82751773	-	SAB2056c	-	ferrichrome ABC transporter
1991	 34.59	0	2202803..2203834	-	343	82751774	-	SAB2057c	-	ferrichrome ABC transporter
1992	 30.97	0	2203846..2204859	-	337	82751775	-	SAB2058c	-	ferrichrome ABC transporter lipoprotein
1993	 30.35	0	2205222..2206292	-	356	82751776	-	SAB2059c	-	hypothetical protein
1994	 32.54	0	2206299..2208056	-	585	82751777	-	SAB2060c	-	hypothetical protein
1995	 31.99	0	2208043..2209236	-	397	82751778	-	SAB2061c	-	membrane transporter
1996	 32.68	0	2209338..2211314	+	658	82751779	-	SAB2062	-	hypothetical protein
1997	 32.16	0	2211474..2211983	-	169	82751780	asp23	SAB2063c	-	alkaline shock protein 23
1998	 30.42	0	2212046..2212285	-	79	82751781	-	SAB2064c	-	hypothetical protein
1999	 32.66	0	2212298..2212894	-	198	82751782	-	SAB2065c	-	hypothetical protein
2000	 35.70	0	2213008..2214570	-	520	82751783	opuD	SAB2066c	-	glycine betaine transporter
2001	 33.53	0	2214877..2215884	-	335	82751784	-	SAB2067c	-	hypothetical protein
2002	 37.51	+1	2216116..2217120	-	334	82751785	-	SAB2068c	-	quinone oxidoreductase
2003	 34.01	0	2217399..2218283	-	294	82751786	-	SAB2069c	-	hypothetical protein
2004	 34.89	0	2218534..2219946	-	470	82751787	lacG	SAB2070c	-	6-phospho-beta-galactosidase
2005	 35.55	0	2219964..2221676	-	570	82751788	lacE	SAB2071c	-	PTS system lactose-specific IIBC component
2006	 35.90	0	2221682..2221993	-	103	82751789	lacF	SAB2072c	-	PTS system, lactose-specific IIA component
2007	 34.76	0	2222015..2222995	-	326	82751790	lacD	SAB2073c	-	tagatose 1,6-diphosphate aldolase
2008	 35.58	0	2222999..2223931	-	310	82751791	lacC	SAB2074c	-	tagatose-6-phosphate kinase
2009	 34.30	0	2223944..2224459	-	171	82751792	lacB	SAB2075c	-	galactose-6-phosphate isomerase subunit LacB
2010	 36.83	+1	2224476..2224904	-	142	82751793	lacA	SAB2076c	-	galactose-6-phosphate isomerase subunit LacA
2011	 33.73	0	2225271..2226026	-	251	82751794	lacR	SAB2077c	-	lactose phosphotransferase system repressor
2012	 36.75	+1	2226277..2227008	+	243	82751795	-	SAB2078	-	NAD-dependent deacetylase
2013	 23.14	-2	2227462..2227932	-	156	82751796	-	SAB2079c	-	hypothetical protein
2014	 33.10	0	2228539..2229387	-	282	82751797	-	SAB2080c	-	oxidoreductase
2015	 30.34	0	2229607..2229873	-	88	82751798	-	SAB2081c	-	MerR family transcriptional regulator
2016	 33.37	0	2230263..2232692	+	809	82751799	hysA2	SAB2082	-	hyaluronate lyase
2017	 25.48	-2	2232866..2233795	-	309	82751800	-	SAB2083c	-	transcriptional regulator
2018	 28.84	-1	2233832..2234521	+	229	82751801	-	SAB2084	-	hypothetical protein
2019	 31.22	0	2234708..2235133	+	141	82751802	-	SAB2085	-	hypothetical protein
2020	 33.90	0	2235509..2236213	-	234	82751803	-	SAB2086c	-	alpha-acetolactate decarboxylase
2021	 35.14	0	2236250..2237914	-	554	82751804	-	SAB2087c	-	acetolactate synthase
2022	 35.29	0	2238209..2238361	+	50	82751805	-	SAB2088	-	hypothetical protein
2023	 32.78	0	2239118..2239297	-	59	82751806	-	SAB2089c	-	hypothetical protein
2024	 40.60	+2	2239799..2240197	-	132	82751807	rpsI	SAB2090c	-	30S ribosomal protein S9
2025	 36.53	+1	2240211..2240648	-	145	82751808	rplM	SAB2091c	-	50S ribosomal protein L13
2026	 34.20	0	2240887..2241690	-	267	82751809	truA	SAB2092c	-	tRNA pseudouridine synthase A
2027	 31.97	0	2241695..2242501	-	268	82751810	-	SAB2093c	-	cobalt ABC transporter permease
2028	 34.49	0	2242491..2243351	-	286	82751811	-	SAB2094c	-	cobalt transporter ATP-binding subunit
2029	 34.42	0	2243348..2244268	-	306	82751812	-	SAB2095c	-	cobalt transporter ATP-binding subunit
2030	 37.40	+1	2244694..2245062	-	122	82751813	rplQ	SAB2096c	-	50S ribosomal protein L17
2031	 33.76	0	2245079..2246023	-	314	82751814	rpoA	SAB2097c	-	DNA-directed RNA polymerase subunit alpha
2032	 40.00	+2	2246098..2246487	-	129	82751815	rpsK	SAB2098c	-	30S ribosomal protein S11
2033	 39.07	+1	2246511..2246876	-	121	82751816	rpsM	SAB2099c	-	30S ribosomal protein S13
2034	 33.33	0	2247044..2247262	-	72	82751817	infA	SAB2100c	-	translation initiation factor IF-1
2035	 35.34	0	2247455..2248102	-	215	82751818	adk	SAB2101c	-	adenylate kinase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.