IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1887	 31.44	0	2085545..2086546	-	333	82751670	rsbU	SAB1952c	-	indirect positive regulator of sigma B
1888	 33.05	0	2086904..2087257	-	117	82751671	-	SAB1953c	-	hypothetical protein
1889	 33.33	0	2087254..2087424	-	56	82751672	-	SAB1954c	-	hypothetical protein
1890	 35.94	0	2087509..2088657	-	382	82751673	alr	SAB1955c	-	alanine racemase
1891	 35.28	0	2088723..2089082	-	119	82751674	acpS	SAB1956c	-	holo-acyl-carrier protein synthase
1892	 33.74	0	2089086..2089577	-	163	82751675	-	SAB1957c	-	hypothetical protein
1893	 31.88	0	2089570..2091147	-	525	82751676	-	SAB1958c	-	hypothetical protein
1894	 30.21	0	2091140..2091619	-	159	82751677	-	SAB1959c	-	hypothetical protein
1895	 34.76	0	2091823..2092383	-	186	82751678	kdpC	SAB1960c	-	potassium-transporting ATPase C chain
1896	 35.01	0	2092403..2094430	-	675	82751679	kdpB	SAB1961c	-	potassium-transporting ATPase B chain
1897	 32.86	0	2094449..2096125	-	558	82751680	kdpA	SAB1962c	-	potassium-transporting ATPase subunit A
1898	 31.64	0	2096397..2099054	+	885	82751681	kdpD	SAB1963	-	two component sensor protein
1899	 32.33	0	2099054..2099749	+	231	82751682	kdpE	SAB1964	-	two component sensor protein
1900	 36.49	+1	2100100..2101620	-	506	82751683	-	SAB1965c	-	ATP-dependent RNA helicase
1901	 32.97	0	2102137..2103495	-	452	82751684	-	SAB1966c	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase
1902	 33.52	0	2103510..2104580	-	356	82751685	ddl	SAB1967c	-	D-alanyl-alanine synthetase A
1903	 32.67	0	2104898..2106100	+	400	82751686	-	SAB1968	-	hypothetical protein
1904	 26.81	-1	2106364..2106501	-	45	82751687	-	SAB1969c	-	hypothetical protein
1905	 30.48	0	2106629..2106838	-	69	82751688	-	SAB1970c	-	hypothetical protein
1906	 33.67	0	2106850..2107143	-	97	82751689	-	SAB1971c	-	hypothetical protein
1907	 32.05	0	2107309..2108793	+	494	82751690	-	SAB1972	-	cardiolipin synthetase
1908	 34.26	0	2108821..2109468	+	215	82751691	-	SAB1973	-	hypothetical protein
1909	 33.79	0	2110132..2111004	-	290	82751692	-	SAB1974c	-	membrane-embedded lipoprotein precursor
1910	 35.05	0	2111090..2111731	-	213	82751693	thiE	SAB1975c	-	thiamine-phosphate pyrophosphorylase
1911	 35.35	0	2111733..2112524	-	263	82751694	thiM	SAB1976c	-	hydroxyethylthiazole kinase
1912	 32.03	0	2113330..2114019	-	229	82751695	tenA	SAB1978c	-	transcriptional activator
1913	 34.07	0	2114282..2114554	+	90	82751696	-	SAB1979	-	hypothetical protein
1914	 39.22	+1	2114544..2115239	-	231	82751697	-	SAB1980c	-	hypothetical protein
1915	 30.30	0	2115628..2116023	-	131	82751698	-	SAB1981c	-	single strand DNA binding protein
1916	 29.76	0	2116154..2116657	+	167	82751699	-	SAB1982	-	hypothetical protein
1917	 33.79	0	2116714..2117154	-	146	82751700	fabZ	SAB1983c	-	3R-hydroxymyristoyl ACP dehydratase
1918	 35.94	0	2117188..2118453	-	421	82751701	murA1	SAB1984c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1919	 28.63	-1	2118564..2118797	-	77	82751702	-	SAB1985c	-	hypothetical protein
1920	 36.54	+1	2119321..2119725	-	134	82751703	atpC	SAB1986c	-	F0F1 ATP synthase subunit epsilon
1921	 38.85	+1	2119745..2121157	-	470	82751704	atpD	SAB1987c	-	F0F1 ATP synthase subunit beta
1922	 34.83	0	2121179..2122045	-	288	82751705	atpG	SAB1988c	-	F0F1 ATP synthase subunit gamma
1923	 37.18	+1	2122076..2123584	-	502	82751706	atpA	SAB1989c	-	F0F1 ATP synthase subunit alpha
1924	 29.63	-1	2123606..2124145	-	179	82751707	atpH	SAB1990c	-	F0F1 ATP synthase subunit delta
1925	 36.02	0	2124145..2124666	-	173	82751708	atpF	SAB1991c	-	F0F1 ATP synthase subunit B
1926	 40.38	+2	2124864..2125076	-	70	82751709	atpE	SAB1992c	-	F0F1 ATP synthase subunit C
1927	 35.53	0	2125119..2125847	-	242	82751710	atpB	SAB1993c	-	F0F1 ATP synthase subunit A
1928	 30.23	0	2125868..2126221	-	117	82751711	atpI	SAB1994c	-	hypothetical protein
1929	 34.75	0	2126388..2127518	-	376	82751712	mnaA	SAB1995c	-	UDP-GlcNAc 2-epimerase
1930	 36.83	+1	2127539..2128168	-	209	82751713	upp	SAB1996c	-	uracil phosphoribosyltransferase
1931	 36.97	+1	2128196..2129434	-	412	82751714	glyA	SAB1997c	-	serine hydroxymethyltransferase
1932	 36.57	+1	2129461..2129985	-	174	82751715	-	SAB1998c	-	hypothetical protein
1933	 32.86	0	2130092..2130511	-	139	82751716	-	SAB1999c	-	hypothetical protein
1934	 35.15	0	2130508..2131554	-	348	82751717	-	SAB2000c	-	hypothetical protein
1935	 34.65	0	2131638..2132474	-	278	82751718	-	SAB2001c	-	hypothetical protein
1936	 35.19	0	2132461..2133537	-	358	82751719	prfA	SAB2002c	-	peptide chain release factor 1
1937	 36.83	+1	2133538..2134137	-	199	82751720	-	SAB2003c	-	thymidine kinase
1938	 35.69	0	2134484..2134738	-	84	82751721	rpmE2	SAB2004c	-	50S ribosomal protein L31 type B
1939	 35.61	0	2134856..2136172	-	438	82751722	rho	SAB2005c	-	transcription termination factor Rho
1940	 36.69	+1	2136419..2137846	-	475	82751723	-	SAB2006c	-	aldehyde dehydrogenase
1941	 35.40	0	2138085..2138423	-	112	82751724	-	SAB2007c	-	hypothetical protein
1942	 34.60	0	2138509..2139768	-	419	82751725	murA2	SAB2008c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1943	 36.59	+1	2140234..2141094	-	286	82751726	-	SAB2009c	-	fructose-bisphosphate aldolase
1944	 31.61	0	2141312..2141833	+	173	82751727	-	SAB2010	-	hypothetical protein
1945	 34.08	0	2141942..2143552	-	536	82751728	pyrG	SAB2011c	-	CTP synthetase
1946	 31.26	0	2143888..2144418	-	176	82751729	rpoE	SAB2012c	-	DNA-directed RNA polymerase subunit delta
1947	 32.98	0	2144530..2145390	-	286	82751730	-	SAB2013c	-	hypothetical protein
1948	 36.94	+1	2145815..2146618	+	267	82751731	-	SAB2014	-	pantothenate kinase
1949	 32.29	0	2146748..2147419	-	223	82751732	-	SAB2015c	-	hypothetical protein
1950	 33.75	0	2147818..2149011	-	397	82751733	-	SAB2016c	-	hypothetical protein
1951	 36.79	+1	2149011..2150195	-	394	82751734	-	SAB2017c	-	amidase
1952	 33.55	0	2150506..2150976	+	156	82751735	luxS	SAB2018	-	S-ribosylhomocysteinase
1953	 31.91	0	2151128..2151478	-	116	82751736	-	SAB2019c	-	hypothetical protein
1954	 36.41	+1	2151492..2152793	-	433	82751737	pyn	SAB2020c	-	pyrimidine-nucleoside phosphorylase
1955	 40.42	+2	2153073..2153735	-	220	82751738	deoC2	SAB2021c	-	deoxyribose-phosphate aldolase
1956	 34.60	0	2154049..2154759	+	236	82751739	deoD	SAB2022	-	purine nucleoside phosphorylase
1957	 32.66	0	2154880..2155323	-	147	82751740	-	SAB2023c	-	general stress protein 20U
1958	 32.37	0	2155523..2155936	-	137	82751741	-	SAB2024c	-	hypothetical protein
1959	 31.66	0	2156394..2157767	-	457	82751742	-	SAB2025c	-	hypothetical protein
1960	 35.50	0	2158441..2158671	-	76	82751743	-	SAB2026c	-	hypothetical protein
1961	 34.19	0	2158702..2159640	-	312	82751744	-	SAB2027c	-	mannose-6-phosphate isomerase
1962	 34.38	0	2160076..2160741	-	221	82751745	-	SAB2028c	-	hypothetical protein
1963	 34.27	0	2160893..2161213	+	106	82751746	czrA	SAB2029	-	zinc and cobalt transport repressor protein
1964	 33.33	0	2161215..2162195	+	326	82751747	czrB	SAB2030	-	cation-efflux system membrane protein
1965	 27.18	-1	2162460..2163515	+	351	82751748	-	SAB2031	-	membrane-embedded lytic regulatory protein
1966	 33.57	0	2164066..2164923	-	285	82751749	-	SAB2032c	-	hypothetical protein
1967	 34.74	0	2164991..2165773	-	260	82751750	-	SAB2033c	-	ABC transporter ATP-binding protein
1968	 35.27	0	2166005..2167810	-	601	82751751	glmS	SAB2034c	-	D-fructose-6-phosphate amidotransferase
1969	 21.26	-2	2168260..2168433	+	57	82751752	-	SAB2035	-	hypothetical protein
1970	 35.61	0	2168491..2170029	+	512	82751753	mtlA	SAB2036	-	PTS system mannitol-specific IIBC component
1971	 33.10	0	2170064..2172196	+	710	82751754	-	SAB2037	-	transcription antiterminator
1972	 35.86	0	2172208..2172642	+	144	82751755	mtlF	SAB2038	-	PTS system mannitol-specific IIA component
1973	 33.06	0	2172642..2173748	+	368	82751756	mtlD	SAB2039	-	mannitol-1-phosphate 5-dehydrogenase
1974	 35.64	0	2174067..2180000	-	1977	82751757	fmtB	SAB2040c	-	truncated methicillin resistance-related surface protein
1975	 34.44	0	2180278..2181633	-	451	82751758	-	SAB2041c	-	phosphoglucosamine-mutase
1976	 30.01	0	2181660..2182592	-	310	82751759	-	SAB2042c	-	hypothetical protein
1977	 33.70	0	2182594..2183403	-	269	82751760	-	SAB2043c	-	hypothetical protein
1978	 31.57	0	2183592..2184500	-	302	82751761	rocF	SAB2044c	-	arginase
1979	 29.33	-1	2184629..2185453	-	274	82751762	-	SAB2045c	-	transposase
1980	 33.33	0	2185450..2185950	-	166	82751763	-	SAB2046c	-	transposase
1981	 35.31	0	2192150..2193214	-	354	82751764	-	SAB2047c	-	multidrug resistance protein
1982	 33.82	0	2193362..2194807	-	481	82751765	-	SAB2048c	-	multidrug resistance protein
1983	 26.16	-2	2195127..2195600	-	157	82751766	-	SAB2049c	-	hypothetical protein
1984	 30.13	0	2195699..2197042	-	447	82751767	-	SAB2050c	-	drug resistance-involved transporter
1985	 31.30	0	2197215..2197901	-	228	82751768	-	SAB2051c	-	hemolysin
1986	 30.81	0	2197917..2199104	-	395	82751769	-	SAB2052c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.