IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1866	 31.73	0	2056451..2058379	+	642	82751649	-	SAB1931	-	ATP-binding ABC transporter protein
1867	 30.23	0	2058748..2060358	+	536	82751650	-	SAB1932	-	hypothetical protein
1868	 41.41	+2	2060506..2060703	+	65	82751651	-	SAB1933	-	hypothetical protein
1869	 37.43	+1	2060786..2061811	-	341	82751652	-	SAB1934c	-	O-sialoglycoprotein endopeptidase
1870	 32.04	0	2061804..2062268	-	154	82751653	-	SAB1935c	-	ribosomal-protein-alanine acetyltransferase
1871	 34.99	0	2062241..2062903	-	220	82751654	-	SAB1936c	-	hypothetical protein
1872	 31.17	0	2062884..2063345	-	153	82751655	-	SAB1937c	-	hypothetical protein
1873	 40.26	+2	2063851..2065539	+	562	82751656	-	SAB1938	-	dihydroxy-acid dehydratase
1874	 36.67	+1	2065567..2067336	+	589	82751657	ilvB	SAB1939	-	acetolactate synthase large subunit
1875	 30.59	0	2067336..2067590	+	84	82751658	ilvH	SAB1940	-	acetolactate synthase 1 regulatory subunit
1876	 35.02	0	2067727..2068731	+	334	82751659	ilvC	SAB1941	-	ketol-acid reductoisomerase
1877	 36.14	0	2068761..2070290	+	509	82751660	leuA	SAB1942	-	2-isopropylmalate synthase
1878	 35.63	0	2070293..2071339	+	348	82751661	leuB	SAB1943	-	3-isopropylmalate dehydrogenase
1879	 38.15	+1	2071353..2072723	+	456	82751662	leuC	SAB1944	-	isopropylmalate isomerase large subunit
1880	 33.16	0	2072724..2073296	+	190	82751663	leuD	SAB1945	-	isopropylmalate isomerase small subunit
1881	 32.07	0	2073311..2074579	+	422	82751664	ilvA	SAB1946	-	threonine dehydratase
1882	 33.33	0	2080842..2081306	-	154	82751665	-	SAB1947c	-	hypothetical protein
1883	 33.38	0	2081290..2083440	-	716	82751666	-	SAB1948c	-	hypothetical protein
1884	 34.50	0	2083874..2084644	-	256	82751667	sigB	SAB1949c	-	RNA polymerase sigma factor SigB
1885	 32.71	0	2084619..2085098	-	159	82751668	rsbW	SAB1950c	-	serine-protein kinase RsbW
1886	 31.50	0	2085100..2085426	-	108	82751669	rsbV	SAB1951c	-	anti-sigma B factor antagonist
1887	 31.44	0	2085545..2086546	-	333	82751670	rsbU	SAB1952c	-	indirect positive regulator of sigma B
1888	 33.05	0	2086904..2087257	-	117	82751671	-	SAB1953c	-	hypothetical protein
1889	 33.33	0	2087254..2087424	-	56	82751672	-	SAB1954c	-	hypothetical protein
1890	 35.94	0	2087509..2088657	-	382	82751673	alr	SAB1955c	-	alanine racemase
1891	 35.28	0	2088723..2089082	-	119	82751674	acpS	SAB1956c	-	holo-acyl-carrier protein synthase
1892	 33.74	0	2089086..2089577	-	163	82751675	-	SAB1957c	-	hypothetical protein
1893	 31.88	0	2089570..2091147	-	525	82751676	-	SAB1958c	-	hypothetical protein
1894	 30.21	0	2091140..2091619	-	159	82751677	-	SAB1959c	-	hypothetical protein
1895	 34.76	0	2091823..2092383	-	186	82751678	kdpC	SAB1960c	-	potassium-transporting ATPase C chain
1896	 35.01	0	2092403..2094430	-	675	82751679	kdpB	SAB1961c	-	potassium-transporting ATPase B chain
1897	 32.86	0	2094449..2096125	-	558	82751680	kdpA	SAB1962c	-	potassium-transporting ATPase subunit A
1898	 31.64	0	2096397..2099054	+	885	82751681	kdpD	SAB1963	-	two component sensor protein
1899	 32.33	0	2099054..2099749	+	231	82751682	kdpE	SAB1964	-	two component sensor protein
1900	 36.49	+1	2100100..2101620	-	506	82751683	-	SAB1965c	-	ATP-dependent RNA helicase
1901	 32.97	0	2102137..2103495	-	452	82751684	-	SAB1966c	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanine ligase
1902	 33.52	0	2103510..2104580	-	356	82751685	ddl	SAB1967c	-	D-alanyl-alanine synthetase A
1903	 32.67	0	2104898..2106100	+	400	82751686	-	SAB1968	-	hypothetical protein
1904	 26.81	-1	2106364..2106501	-	45	82751687	-	SAB1969c	-	hypothetical protein
1905	 30.48	0	2106629..2106838	-	69	82751688	-	SAB1970c	-	hypothetical protein
1906	 33.67	0	2106850..2107143	-	97	82751689	-	SAB1971c	-	hypothetical protein
1907	 32.05	0	2107309..2108793	+	494	82751690	-	SAB1972	-	cardiolipin synthetase
1908	 34.26	0	2108821..2109468	+	215	82751691	-	SAB1973	-	hypothetical protein
1909	 33.79	0	2110132..2111004	-	290	82751692	-	SAB1974c	-	membrane-embedded lipoprotein precursor
1910	 35.05	0	2111090..2111731	-	213	82751693	thiE	SAB1975c	-	thiamine-phosphate pyrophosphorylase
1911	 35.35	0	2111733..2112524	-	263	82751694	thiM	SAB1976c	-	hydroxyethylthiazole kinase
1912	 32.03	0	2113330..2114019	-	229	82751695	tenA	SAB1978c	-	transcriptional activator
1913	 34.07	0	2114282..2114554	+	90	82751696	-	SAB1979	-	hypothetical protein
1914	 39.22	+1	2114544..2115239	-	231	82751697	-	SAB1980c	-	hypothetical protein
1915	 30.30	0	2115628..2116023	-	131	82751698	-	SAB1981c	-	single strand DNA binding protein
1916	 29.76	0	2116154..2116657	+	167	82751699	-	SAB1982	-	hypothetical protein
1917	 33.79	0	2116714..2117154	-	146	82751700	fabZ	SAB1983c	-	3R-hydroxymyristoyl ACP dehydratase
1918	 35.94	0	2117188..2118453	-	421	82751701	murA1	SAB1984c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1919	 28.63	-1	2118564..2118797	-	77	82751702	-	SAB1985c	-	hypothetical protein
1920	 36.54	+1	2119321..2119725	-	134	82751703	atpC	SAB1986c	-	F0F1 ATP synthase subunit epsilon
1921	 38.85	+1	2119745..2121157	-	470	82751704	atpD	SAB1987c	-	F0F1 ATP synthase subunit beta
1922	 34.83	0	2121179..2122045	-	288	82751705	atpG	SAB1988c	-	F0F1 ATP synthase subunit gamma
1923	 37.18	+1	2122076..2123584	-	502	82751706	atpA	SAB1989c	-	F0F1 ATP synthase subunit alpha
1924	 29.63	-1	2123606..2124145	-	179	82751707	atpH	SAB1990c	-	F0F1 ATP synthase subunit delta
1925	 36.02	0	2124145..2124666	-	173	82751708	atpF	SAB1991c	-	F0F1 ATP synthase subunit B
1926	 40.38	+2	2124864..2125076	-	70	82751709	atpE	SAB1992c	-	F0F1 ATP synthase subunit C
1927	 35.53	0	2125119..2125847	-	242	82751710	atpB	SAB1993c	-	F0F1 ATP synthase subunit A
1928	 30.23	0	2125868..2126221	-	117	82751711	atpI	SAB1994c	-	hypothetical protein
1929	 34.75	0	2126388..2127518	-	376	82751712	mnaA	SAB1995c	-	UDP-GlcNAc 2-epimerase
1930	 36.83	+1	2127539..2128168	-	209	82751713	upp	SAB1996c	-	uracil phosphoribosyltransferase
1931	 36.97	+1	2128196..2129434	-	412	82751714	glyA	SAB1997c	-	serine hydroxymethyltransferase
1932	 36.57	+1	2129461..2129985	-	174	82751715	-	SAB1998c	-	hypothetical protein
1933	 32.86	0	2130092..2130511	-	139	82751716	-	SAB1999c	-	hypothetical protein
1934	 35.15	0	2130508..2131554	-	348	82751717	-	SAB2000c	-	hypothetical protein
1935	 34.65	0	2131638..2132474	-	278	82751718	-	SAB2001c	-	hypothetical protein
1936	 35.19	0	2132461..2133537	-	358	82751719	prfA	SAB2002c	-	peptide chain release factor 1
1937	 36.83	+1	2133538..2134137	-	199	82751720	-	SAB2003c	-	thymidine kinase
1938	 35.69	0	2134484..2134738	-	84	82751721	rpmE2	SAB2004c	-	50S ribosomal protein L31 type B
1939	 35.61	0	2134856..2136172	-	438	82751722	rho	SAB2005c	-	transcription termination factor Rho
1940	 36.69	+1	2136419..2137846	-	475	82751723	-	SAB2006c	-	aldehyde dehydrogenase
1941	 35.40	0	2138085..2138423	-	112	82751724	-	SAB2007c	-	hypothetical protein
1942	 34.60	0	2138509..2139768	-	419	82751725	murA2	SAB2008c	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1943	 36.59	+1	2140234..2141094	-	286	82751726	-	SAB2009c	-	fructose-bisphosphate aldolase
1944	 31.61	0	2141312..2141833	+	173	82751727	-	SAB2010	-	hypothetical protein
1945	 34.08	0	2141942..2143552	-	536	82751728	pyrG	SAB2011c	-	CTP synthetase
1946	 31.26	0	2143888..2144418	-	176	82751729	rpoE	SAB2012c	-	DNA-directed RNA polymerase subunit delta
1947	 32.98	0	2144530..2145390	-	286	82751730	-	SAB2013c	-	hypothetical protein
1948	 36.94	+1	2145815..2146618	+	267	82751731	-	SAB2014	-	pantothenate kinase
1949	 32.29	0	2146748..2147419	-	223	82751732	-	SAB2015c	-	hypothetical protein
1950	 33.75	0	2147818..2149011	-	397	82751733	-	SAB2016c	-	hypothetical protein
1951	 36.79	+1	2149011..2150195	-	394	82751734	-	SAB2017c	-	amidase
1952	 33.55	0	2150506..2150976	+	156	82751735	luxS	SAB2018	-	S-ribosylhomocysteinase
1953	 31.91	0	2151128..2151478	-	116	82751736	-	SAB2019c	-	hypothetical protein
1954	 36.41	+1	2151492..2152793	-	433	82751737	pyn	SAB2020c	-	pyrimidine-nucleoside phosphorylase
1955	 40.42	+2	2153073..2153735	-	220	82751738	deoC2	SAB2021c	-	deoxyribose-phosphate aldolase
1956	 34.60	0	2154049..2154759	+	236	82751739	deoD	SAB2022	-	purine nucleoside phosphorylase
1957	 32.66	0	2154880..2155323	-	147	82751740	-	SAB2023c	-	general stress protein 20U
1958	 32.37	0	2155523..2155936	-	137	82751741	-	SAB2024c	-	hypothetical protein
1959	 31.66	0	2156394..2157767	-	457	82751742	-	SAB2025c	-	hypothetical protein
1960	 35.50	0	2158441..2158671	-	76	82751743	-	SAB2026c	-	hypothetical protein
1961	 34.19	0	2158702..2159640	-	312	82751744	-	SAB2027c	-	mannose-6-phosphate isomerase
1962	 34.38	0	2160076..2160741	-	221	82751745	-	SAB2028c	-	hypothetical protein
1963	 34.27	0	2160893..2161213	+	106	82751746	czrA	SAB2029	-	zinc and cobalt transport repressor protein
1964	 33.33	0	2161215..2162195	+	326	82751747	czrB	SAB2030	-	cation-efflux system membrane protein
1965	 27.18	-1	2162460..2163515	+	351	82751748	-	SAB2031	-	membrane-embedded lytic regulatory protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.