IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1746	 34.88	0	1943843..1944358	-	171	82751528	-	SAB1807c	-	hypothetical protein
1747	 31.48	0	1944488..1944649	-	53	82751529	-	SAB1808c	-	hypothetical protein
1748	 33.42	0	1944872..1946023	+	383	82751530	-	SAB1809	-	hypothetical protein
1749	 36.35	+1	1946284..1946814	-	176	82751531	-	SAB1810c	-	hypothetical protein
1750	 33.97	0	1946904..1948151	-	415	82751532	-	SAB1811c	-	aminopeptidase
1751	 30.85	0	1948163..1948363	-	66	82751533	-	SAB1812c	-	hypothetical protein
1752	 33.76	0	1948510..1948974	+	154	82751534	-	SAB1813	-	protein tyrosine phosphatase
1753	 33.33	0	1948981..1949256	+	91	82751535	-	SAB1814	-	hypothetical protein
1754	 32.59	0	1949534..1950751	+	405	82751536	-	SAB1815	-	hypothetical protein
1755	 33.81	0	1950864..1951493	-	209	82751537	-	SAB1816c	-	two-component response regulator
1756	 32.18	0	1951483..1952526	-	347	82751538	vraS	SAB1817c	-	two-component sensor histidine kinase
1757	 30.20	0	1952523..1953224	-	233	82751539	-	SAB1818c	-	hypothetical protein
1758	 25.84	-2	1953239..1953625	-	128	82751540	-	SAB1819c	-	hypothetical protein
1759	 36.23	0	1953842..1954600	-	252	82751541	-	SAB1820c	-	methionine aminopeptidase
1760	 32.22	0	1955012..1955998	+	328	82751542	-	SAB1821	-	hypothetical protein
1761	 26.57	-1	1956428..1956841	-	137	82751543	-	SAB1822c	-	hypothetical protein
1762	 31.01	0	1957066..1957797	-	243	82751544	-	SAB1823c	-	cobyric acid synthase
1763	 34.40	0	1957799..1959112	-	437	82751545	-	SAB1824c	-	UDP-N-acetylmuramyl tripeptide synthase
1764	 34.13	0	1959407..1959907	+	166	82751546	ftn	SAB1825	-	ferritin
1765	 31.71	0	1960298..1960852	+	184	82751547	-	SAB1826	-	DNA polymerase III alpha chain
1766	 34.95	0	1961004..1961990	-	328	82751548	-	SAB1827c	-	DNA polymerase IV
1767	 28.81	-1	1962237..1962767	-	176	82751549	-	SAB1828c	-	hypothetical protein
1768	 33.04	0	1962937..1964298	-	453	82751550	-	SAB1829c	-	RNA methyltransferase
1769	 34.07	0	1964379..1965326	-	315	82751551	-	SAB1830c	-	putative lipid kinase
1770	 42.42	+2	1965417..1965647	-	76	82751552	-	SAB1831c	-	hypothetical protein
1771	 34.80	0	1966094..1967521	-	475	82751553	gatB	SAB1832c	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
1772	 34.02	0	1967534..1968991	-	485	82751554	gatA	SAB1833c	-	glutamyl-tRNA amidotransferase subunit A
1773	 35.97	0	1968993..1969295	-	100	82751555	gatC	SAB1834c	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
1774	 35.74	0	1969661..1971199	+	512	82751556	putP	SAB1835	-	high affinity proline permease
1775	 29.10	-1	1971358..1971711	-	117	82751557	-	SAB1836c	-	transcriptional regulator
1776	 34.69	0	1971836..1972795	+	319	82751558	-	SAB1837	-	hypothetical protein
1777	 31.00	0	1973079..1974278	-	399	82751559	-	SAB1838c	-	lipoprotein
1778	 34.18	0	1974291..1976294	-	667	82751560	lig	SAB1839c	-	DNA ligase
1779	 34.06	0	1976298..1978490	-	730	82751561	pcrA	SAB1840c	-	ATP-dependent DNA helicase
1780	 33.62	0	1978487..1979179	-	230	82751562	-	SAB1841c	-	geranylgeranylglyceryl phosphate synthase-like protein
1781	 32.34	0	1979351..1979653	-	100	82751563	-	SAB1842c	-	hypothetical protein
1782	 35.57	0	1979762..1981057	-	431	82751564	purB	SAB1843c	-	adenylosuccinate lyase
1783	 31.79	0	1981918..1983084	+	388	82751566	-	SAB1845	-	staphopain cysteine proteinase
1784	 26.91	-1	1983115..1983441	+	108	82751567	-	SAB1846	-	hypothetical protein
1785	 33.91	0	1983733..1983906	-	57	82751568	-	SAB1847c	-	hypothetical protein
1786	 32.01	0	1983887..1984489	-	200	82751569	-	SAB1848c	-	hypothetical protein
1787	 33.70	0	1984759..1985580	-	273	82751570	nadE	SAB1849c	-	NAD synthetase
1788	 33.27	0	1985573..1987042	-	489	82751571	-	SAB1850c	-	nicotinate phosphoribosyltransferase
1789	 33.24	0	1987226..1988302	+	358	82751572	-	SAB1851	-	nitric oxide synthase
1790	 32.70	0	1988322..1989116	+	264	82751573	-	SAB1852	-	hypothetical protein
1791	 34.68	0	1989306..1990868	-	520	82751574	-	SAB1853c	-	sodium-sulfate symport protein
1792	 32.60	0	1991074..1992171	-	365	82751575	-	SAB1854c	-	hypothetical protein
1793	 34.40	0	1992543..1993103	+	186	82751576	-	SAB1855	-	bifunctional pyrazinamidase/nicotinamidase
1794	 33.66	0	1993156..1994085	+	309	82751577	ppaC	SAB1856	-	putative manganese-dependent inorganic pyrophosphatase
1795	 33.62	0	1994503..1995882	+	459	82751578	-	SAB1857	-	aldehyde dehydrogenase
1796	 33.04	0	1996002..1997030	-	342	82751579	-	SAB1858c	-	hypothetical protein
1797	 32.84	0	1997301..1997702	+	133	82751580	-	SAB1859	-	hypothetical protein
1798	 24.71	-2	1997759..1997932	-	57	82751581	-	SAB1860c	-	hypothetical protein
1799	 34.39	0	1998383..1999423	+	346	82751582	-	SAB1861	-	hypothetical protein
1800	 29.18	-1	1999480..2000322	-	280	82751583	-	SAB1862c	-	hypothetical protein
1801	 28.32	-1	2000319..2000876	-	185	82751584	-	SAB1863c	-	hypothetical protein
1802	 28.19	-1	2000936..2001460	-	174	82751585	-	SAB1864c	-	hypothetical protein
1803	 31.56	0	2001581..2002144	+	187	82751586	-	SAB1865	-	hypothetical protein
1804	 26.72	-1	2002210..2002950	-	246	82751587	-	SAB1866c	-	hypothetical protein
1805	 29.10	-1	2002950..2003822	-	290	82751588	-	SAB1867c	-	transport protein
1806	 26.87	-1	2003819..2004499	-	226	82751589	-	SAB1868c	-	hypothetical protein
1807	 31.22	0	2004500..2005396	-	298	82751590	-	SAB1869c	-	ABC transporter
1808	 32.28	0	2005393..2005773	-	126	82751591	-	SAB1870c	-	GntR family transcriptional regulator
1809	 24.86	-2	2006271..2006447	-	58	82751592	-	SAB1871c	-	hypothetical protein
1810	 33.64	0	2006988..2008274	+	428	82751593	-	SAB1872	-	hypothetical protein
1811	 27.61	-1	2008883..2009965	-	360	82751594	-	SAB1873c	-	cell surface protein
1812	 33.23	0	2010354..2011346	+	330	82751595	-	SAB1874	-	beta-hemolysin
1813	 30.19	0	2011862..2012878	-	338	82751596	-	SAB1875c	-	leukocidin F subunit
1814	 29.83	0	2012900..2013955	-	351	82751597	-	SAB1876c	-	leukocidin S subunit
1815	 33.33	0	2014391..2015614	+	407	82751598	-	SAB1877	-	succinyl-diaminopimelate desuccinylase
1816	 28.02	-1	2016112..2016450	-	112	82751599	-	SAB1878c	-	hypothetical protein
1817	 27.98	-1	2016572..2016982	-	136	82751600	-	SAB1879c	-	hypothetical protein
1818	 29.88	0	2016985..2018055	-	356	82751601	-	SAB1880c	-	5-aminolevulinate synthase
1819	 32.82	0	2018495..2018689	-	64	82751602	-	SAB1881c	-	hypothetical protein
1820	 28.67	-1	2018763..2020070	+	435	82751603	-	SAB1882	-	sodium transport protein
1821	 25.68	-2	2020407..2020628	+	73	82751604	-	SAB1883	-	transposase
1822	 28.39	-1	2020648..2021274	-	208	82751605	-	SAB1884c	-	phage-like protein
1823	 27.22	-1	2021271..2021450	-	59	82751606	-	SAB1885c	-	hypothetical protein
1824	 31.11	0	2023094..2023228	-	44	82751607	-	SAB1888c	-	hypothetical protein
1825	 24.95	-2	2023929..2024429	-	166	82751608	-	SAB1889c	-	hypothetical protein
1826	 25.64	-2	2024780..2024896	+	38	82751609	-	SAB1890	-	hypothetical protein
1827	 29.39	-1	2025043..2025726	+	227	82751610	-	SAB1891	-	hypothetical protein
1828	 32.65	0	2025927..2027396	-	489	82751611	-	SAB1892c	-	multidrug resistance protein
1829	 18.37	-2	2027398..2027544	-	48	82751612	-	SAB1893c	-	hypothetical protein
1830	 29.82	0	2028146..2028487	-	113	82751613	-	SAB1895c	-	mobile element-associated protein
1831	 32.29	0	2028490..2029065	-	191	82751614	-	SAB1896c	-	mobile element-associated protein
1832	 28.77	-1	2029068..2029286	-	72	82751615	-	SAB1897c	-	mobile element-associated protein
1833	 29.71	-1	2029304..2029882	-	192	82751616	-	SAB1898c	-	mobile element-associated protein
1834	 33.04	0	2029894..2030235	-	113	82751617	-	SAB1899c	-	mobile element-associated protein
1835	 34.13	0	2030416..2030541	-	41	82751618	-	SAB1900c	-	hypothetical protein
1836	 28.16	-1	2030553..2030726	-	57	82751619	-	SAB1901c	-	hypothetical protein
1837	 35.20	0	2030752..2031393	-	213	82751620	-	SAB1902c	-	mobile element-associated protein
1838	 31.50	0	2031390..2031770	-	126	82751621	-	SAB1903c	-	mobile element-associated protein
1839	 31.99	0	2032079..2033788	-	569	82751622	-	SAB1904c	-	mobile element-associated protein
1840	 34.37	0	2033802..2034671	-	289	82751623	-	SAB1905c	-	mobile element-associated protein
1841	 28.62	-1	2034738..2035055	-	105	82751624	-	SAB1906c	-	mobile element-associated protein
1842	 27.37	-1	2035056..2035424	-	122	82751625	-	SAB1907c	-	hypothetical protein
1843	 31.46	0	2035417..2035629	-	70	82751626	-	SAB1908c	-	mobile element-associated protein
1844	 31.13	0	2035765..2036082	-	105	82751627	-	SAB1909c	-	hypothetical protein
1845	 31.22	0	2036086..2036274	-	62	82751628	-	SAB1910c	-	SaPI1 Orf21
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.