IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
128	 33.01	0	167330..170119	+	929	82749905	-	SAB0135	-	type I restriction enzyme restriction chain
129	 29.17	-1	170266..170865	-	199	82749906	-	SAB0136c	-	hypothetical protein
130	 30.10	0	170989..172101	+	370	82749907	-	SAB0137	-	hypothetical protein
131	 31.42	0	172098..172778	+	226	82749908	-	SAB0138	-	ABC transporter ATP-binding protein
132	 30.70	0	172967..173953	+	328	82749909	-	SAB0139	-	ABC transporter ATP-binding protein
133	 41.44	+2	174161..174382	+	73	82749910	-	SAB0140	-	hypothetical protein
134	 23.31	-2	174453..176138	+	561	82749911	-	SAB0141	-	hypothetical protein
135	 25.68	-2	176196..176639	+	147	82749912	-	SAB0142	-	hypothetical protein
136	 26.69	-1	176651..177373	+	240	82749913	-	SAB0143	-	ABC transporter ATP-binding protein
137	 32.52	0	179783..181261	+	492	82749914	-	SAB0145	-	oligopeptide ABC transporter permease protein
138	 34.11	0	181267..182430	+	387	82749915	-	SAB0146	-	oligopeptide ABC transporter
139	 33.56	0	182447..184222	+	591	82749916	-	SAB0147	-	RGD-containing lipoprotein
140	 38.32	+1	184260..186266	+	668	82749917	-	SAB0148	-	gamma-glutamyltransferase
141	 33.33	0	186804..187430	-	208	161777622	-	SAB0149c	-	azoreductase
142	 35.58	0	187639..188217	+	192	82749919	-	SAB0150	-	hypothetical protein
143	 34.88	0	188600..189697	+	365	82749920	-	SAB0151	-	multiple sugar-binding transport ATP-binding protein
144	 34.12	0	189710..190981	+	423	82749921	-	SAB0152	-	maltose/maltodextrin transport system protein
145	 35.07	0	190984..192252	+	422	82749922	-	SAB0153	-	maltose/maltodextrin transport permease protein
146	 33.93	0	192254..193093	+	279	82749923	-	SAB0154	-	maltose/maltodextrin transport system protein
147	 42.25	+2	193135..193392	+	85	82749924	-	SAB0155	-	hypothetical protein
148	 38.98	+1	193451..194530	+	359	82749925	-	SAB0156	-	NADH-dependent dehydrogenase
149	 39.77	+2	194555..195595	+	346	82749926	-	SAB0157	-	NADH-dependent dehydrogenase
150	 35.91	0	195650..196618	+	322	82749927	-	SAB0158	-	hypothetical protein
151	 26.06	-2	196979..197473	-	164	82749928	-	SAB0159c	-	hypothetical protein
152	 35.65	0	197706..199085	+	459	82749929	uhpT	SAB0160	-	sugar phosphate antiporter
153	 33.07	0	199444..200202	-	252	82749930	-	SAB0161c	-	two-component response regulator
154	 32.88	0	200195..201751	-	518	82749931	-	SAB0162c	-	two-component sensor histidine kinase
155	 34.26	0	201748..202716	-	322	82749932	-	SAB0163c	-	periplasmic iron binding protein
156	 36.67	+1	203304..205553	+	749	82749933	-	SAB0164	-	formate acetyltransferase
157	 35.98	0	205576..206331	+	251	82749934	-	SAB0165	-	formate acetyltransferase activating enzyme
158	 32.36	0	206321..206629	+	102	82749935	-	SAB0166	-	hypothetical protein
159	 30.78	0	206667..208430	+	587	82749936	-	SAB0167	-	hypothetical protein
160	 31.88	0	208595..208939	-	114	82749937	-	SAB0168c	-	hyothetical protein
161	 35.40	0	209129..211012	+	627	82749938	-	SAB0169	-	staphylocoagulase precursor
162	 42.55	+2	211599..212792	-	397	82749939	-	SAB0170c	-	3-ketoacyl-CoA transferase
163	 37.53	+1	212813..215074	-	753	82749940	-	SAB0171c	-	3-hydroxyacyl-CoA dehydrogenase
164	 37.38	+1	216583..218088	-	501	82749941	-	SAB0173c	-	acyl-CoA synthetase
165	 36.81	+1	218114..219694	-	526	82749942	-	SAB0174c	-	acetyl-CoA/acetoacetyl-CoA transferase
166	 34.07	0	220045..221274	+	409	82749943	-	SAB0175	-	hypothetical protein
167	 31.50	0	221588..223063	-	491	82749944	-	SAB0176c	-	peptide ABC transporter
168	 35.57	0	223261..223617	-	118	82749945	-	SAB0177c	-	hypothetical protein
169	 25.86	-2	223774..223947	-	57	82749946	-	SAB0178c	-	hypothetical protein
170	 34.64	0	223973..225118	-	381	82749947	-	SAB0179c	-	flavohemoprotein
171	 37.21	+1	225690..226643	+	317	82749948	-	SAB0180	-	L-lactate dehydrogenase
172	 38.99	+1	226964..228412	-	482	82749949	-	SAB0181c	-	phosphotransferase system enzyme II
173	 39.42	+1	228854..229789	+	311	82749950	-	SAB0182	-	inosine-uridine preferring nucleoside hydrolase family protein
174	 34.83	0	232214..232681	+	155	82749951	-	SAB0184	-	phosphotransferase system enzyme
175	 32.42	0	232704..232922	+	72	82749952	-	SAB0185	-	phosphotransferase system galactitol-specific enzyme II, B component
176	 36.75	+1	233205..234464	+	419	82749953	-	SAB0186	-	phosphotransferase system galactitol-specific enzyme II, C component
177	 36.65	+1	234482..235537	+	351	82749954	-	SAB0187	-	zinc-binding sorbitol dehydrogenase
178	 30.61	0	235539..235685	+	48	82749955	-	SAB0188	-	hypothetical protein
179	 37.55	+1	235709..236752	+	347	82749956	-	SAB0189	-	zinc-binding sorbitol dehydrogenase
180	 32.78	0	237280..237996	+	238	82749957	-	SAB0190	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
181	 32.63	0	239037..240731	+	564	82749958	-	SAB0192	-	teichoic acid biosynthesis protein B
182	 33.76	0	241159..242328	+	389	82749959	-	SAB0193	-	teichoic acid biosynthesis protein F
183	 32.50	0	242604..243320	+	238	82749960	ispD	SAB0194	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
184	 33.24	0	243313..244338	+	341	82749961	-	SAB0195	-	xylitol dehydrogenase
185	 32.03	0	244360..246048	+	562	82749962	-	SAB0196	-	teichoic acid biosynthesis protein B
186	 32.35	0	246081..247802	+	573	82749963	-	SAB0197	-	glycosyl transferase
187	 32.15	0	247946..248620	+	224	82749964	scdA	SAB0198	-	cell wall biosynthesis protein ScdA
188	 35.67	0	248866..250620	+	584	82749965	lytS	SAB0199	-	two-component sensor histidine kinase
189	 31.31	0	250623..251363	+	246	82749966	lytR	SAB0200	-	two-component sensor histidine kinase
190	 34.46	0	251476..251919	+	147	82749967	lrgA	SAB0201	-	murein hydrolase regulator LrgA
191	 36.47	+1	251912..252613	+	233	82749968	lrgB	SAB0202	-	antiholin-like protein LrgB
192	 33.19	0	252721..253425	-	234	82749969	-	SAB0203c	-	GntR family transcriptional regulator
193	 34.85	0	253574..254365	+	263	82749970	-	SAB0204	-	PTS system transport protein
194	 36.52	+1	254405..255817	+	470	82749971	bglA	SAB0205	-	6-phospho-beta-glucosidase
195	 40.48	+2	255881..256174	+	97	82749972	-	SAB0206	-	hypothetical protein
196	 34.12	0	256336..257097	-	253	82749973	-	SAB0207c	-	hypothetical protein
197	 37.49	+1	257347..258261	-	304	82749974	-	SAB0208c	-	ribokinase
198	 32.84	0	258289..258693	-	134	82749975	-	SAB0209c	-	D-ribose pyranase
199	 37.87	+1	258708..259589	-	293	82749976	-	SAB0210c	-	ribose transporter
200	 37.24	+1	259821..260819	-	332	82749977	-	SAB0211c	-	ribose operon transcriptional regulator
201	 26.41	-2	261200..261589	+	129	82749978	-	SAB0212	-	hypothetical protein
202	 37.25	+1	261718..263094	-	458	82749979	-	SAB0213c	-	membrane transporter
203	 35.25	0	263328..264320	+	330	82749980	-	SAB0214	-	penicillin-related choloylglycine hydrolase
204	 39.43	+1	264640..265590	+	316	82749981	lytM	SAB0215	-	peptidoglycan hydrolase
205	 31.67	0	265642..266301	-	219	82749982	-	SAB0216c	-	ABC transporter ATP-binding protein
206	 31.70	0	266315..267235	-	306	82749983	-	SAB0217c	-	hypothetical protein
207	 32.56	0	267232..268398	-	388	82749984	-	SAB0218c	-	hypothetical protein
208	 28.61	-1	268466..269989	-	507	82749985	-	SAB0219c	-	hypothetical protein
209	 28.57	-1	270492..270911	+	139	82749986	-	SAB0220	-	hypothetical protein
210	 27.53	-1	270945..271547	+	200	82749987	-	SAB0221	-	hypothetical protein
211	 38.10	+1	272817..273110	+	97	82749988	-	SAB0223	-	hypothetical protein
212	 30.59	0	273193..276222	+	1009	82749989	-	SAB0224	-	hypothetical protein
213	 29.63	-1	276651..276893	+	80	82749990	-	SAB0226	-	hypothetical protein
214	 29.81	0	276906..278240	+	444	82749991	-	SAB0227	-	hypothetical protein
215	 34.10	0	278262..282701	+	1479	82749992	-	SAB0228	-	DNA segregation ATPase and related protein
216	 31.04	0	282731..283123	+	130	82749993	-	SAB0229	-	hypothetical protein
217	 38.41	+1	283139..283453	+	104	82749994	-	SAB0230	-	hypothetical protein
218	 29.20	-1	283450..284127	+	225	82749995	-	SAB0231	-	hypothetical protein
219	 38.36	+1	284127..284444	+	105	82749996	-	SAB0232	-	hypothetical protein
220	 27.85	-1	286309..286800	+	163	82749997	-	SAB0234	-	hypothetical protein
221	 26.90	-1	287002..287685	+	227	82749998	-	SAB0235	-	hypothetical protein
222	 27.40	-1	287954..288442	+	162	82749999	-	SAB0236	-	hypothetical protein
223	 31.54	0	288660..289160	+	166	82750000	-	SAB0237	-	hypothetical protein
224	 30.74	0	289171..289671	+	166	82750001	-	SAB0238	-	hypothetical protein
225	 31.20	0	289655..290170	+	171	82750002	-	SAB0239	-	hypothetical protein
226	 26.19	-2	290773..291150	+	125	82750003	-	SAB0240	-	hypothetical protein
227	 31.20	0	291321..291695	+	124	82750004	-	SAB0241	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.