IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1659	 34.32	0	1864051..1864353	-	100	82751440	-	SAB1719c	-	phage-like protein
1660	 34.23	0	1864350..1864682	-	110	82751441	-	SAB1720c	-	phage-like protein
1661	 33.33	0	1864691..1864978	-	95	82751442	-	SAB1721c	-	phage-like protein
1662	 34.56	0	1865000..1865974	-	324	82751443	-	SAB1722c	-	phage-related head protein
1663	 32.85	0	1865988..1866602	-	204	82751444	-	SAB1723c	-	phage-like protein
1664	 34.83	0	1866980..1867912	-	310	82751445	-	SAB1724c	-	phage-like protein
1665	 33.46	0	1867976..1869517	-	513	82751446	-	SAB1725c	-	phage-like protein
1666	 33.72	0	1869528..1870817	-	429	82751447	-	SAB1726c	-	phage-associated terminase large subunit
1667	 36.47	+1	1870820..1871329	-	169	82751448	-	SAB1727c	-	mobile-element-associated protein
1668	 32.62	0	1871502..1871921	-	139	82751449	-	SAB1728c	-	mobile-element-associated regulatory protein
1669	 39.08	+1	1872083..1872256	-	57	82751450	rinB	SAB1729c	-	int gene transcriptional activator
1670	 37.20	+1	1872253..1872459	-	68	82751451	-	SAB1730c	-	phage-like protein
1671	 26.02	-2	1872456..1872701	-	81	82751452	-	SAB1731c	-	phage-like protein
1672	 32.40	0	1872738..1873274	-	178	82751453	-	SAB1732c	-	phage-like protein
1673	 36.47	+1	1873422..1873676	-	84	82751454	-	SAB1733c	-	phage-like protein
1674	 40.08	+2	1873736..1873972	-	78	82751455	-	SAB1734c	-	phage-like protein
1675	 38.55	+1	1873981..1874229	-	82	82751456	-	SAB1735c	-	phage-like protein
1676	 37.65	+1	1874229..1874483	-	84	82751457	-	SAB1736c	-	phage-like protein
1677	 35.81	0	1874483..1874845	-	120	82751458	-	SAB1737c	-	phage-like protein
1678	 35.31	0	1875036..1875440	-	134	82751459	-	SAB1738c	-	phage-like protein
1679	 37.84	+1	1875451..1875672	-	73	82751460	-	SAB1739c	-	phage-like protein
1680	 34.72	0	1875675..1875890	-	71	82751461	-	SAB1740c	-	hypothetical protein
1681	 36.55	+1	1875887..1877128	-	413	82751462	dnaB	SAB1741c	-	replicative DNA helicase
1682	 37.54	+1	1877125..1877481	-	118	82751463	-	SAB1742c	-	hypothetical protein
1683	 33.20	0	1877481..1878236	-	251	82751464	-	SAB1743c	-	phage-like protein
1684	 38.10	+1	1878233..1878904	-	223	82751465	-	SAB1744c	-	phage-like protein
1685	 38.97	+1	1878918..1879343	-	141	82751466	-	SAB1745c	-	single strand DNA binding protein
1686	 35.43	0	1879346..1879966	-	206	82751467	-	SAB1746c	-	phage-like protein
1687	 35.14	0	1879959..1880180	-	73	82751468	-	SAB1747c	-	phage-like protein
1688	 32.95	0	1880190..1880450	-	86	82751469	-	SAB1748c	-	phage-like protein
1689	 32.34	0	1880455..1880757	-	100	82751470	-	SAB1749c	-	phage-like protein
1690	 29.84	0	1880822..1881136	-	104	82751471	-	SAB1750c	-	hypothetical protein
1691	 36.26	0	1881141..1881311	-	56	82751472	-	SAB1751c	-	hypothetical protein
1692	 28.70	-1	1881326..1881541	-	71	82751473	-	SAB1752c	-	hypothetical protein
1693	 34.13	0	1881557..1882306	-	249	82751474	-	SAB1753c	-	phage anti-repressor protein
1694	 33.50	0	1882363..1882953	+	196	82751475	-	SAB1754	-	phage-like protein
1695	 35.61	0	1883134..1883922	-	262	82751476	-	SAB1755c	-	phage anti-repressor protein
1696	 28.70	-1	1883938..1884153	-	71	82751477	-	SAB1756c	-	phage-like protein
1697	 31.54	0	1884309..1884977	+	222	82751478	-	SAB1757	-	transcriptional repressor
1698	 28.54	-1	1885034..1885534	+	166	82751479	-	SAB1758	-	hypothetical protein
1699	 35.08	0	1885538..1886053	+	171	82751480	-	SAB1759	-	hypothetical protein
1700	 30.23	0	1886112..1887176	+	354	82751481	-	SAB1760	-	integrase
1701	 33.87	0	1888575..1889129	-	184	82751483	-	SAB1762c	-	hypothetical protein
1702	 35.47	0	1889449..1890849	-	466	82751484	hemY	SAB1763c	-	protoporphyrinogen oxidase
1703	 33.44	0	1890873..1891796	-	307	82751485	hemH	SAB1764c	-	ferrochelatase
1704	 34.87	0	1891854..1892891	-	345	82751486	hemE	SAB1765c	-	uroporphyrinogen decarboxylase
1705	 28.77	-1	1893152..1893655	+	167	82751487	traP	SAB1766	-	signal transduction protein
1706	 29.98	0	1893779..1895002	-	407	82751488	-	SAB1767c	-	ABC transporter
1707	 34.82	0	1894995..1895735	-	246	82751489	-	SAB1768c	-	ABC transporter ATP-binding protein
1708	 30.02	0	1895869..1896291	+	140	82751490	-	SAB1769	-	cell cycle regulation protein
1709	 36.61	+1	1896433..1896798	+	121	82751491	-	SAB1770	-	hypothetical protein
1710	 25.60	-2	1896776..1896982	+	68	82751492	-	SAB1771	-	hypothetical protein
1711	 34.00	0	1897321..1897470	+	49	82751493	-	SAB1772	-	hypothetical protein
1712	 24.73	-2	1897531..1898088	+	185	82751494	-	SAB1773	-	hypothetical protein
1713	 30.63	0	1898293..1899255	+	320	82751495	-	SAB1774	-	peptidyl-prolyl cis-isomerase
1714	 33.55	0	1899376..1900317	-	313	82751496	-	SAB1775c	-	3'-5' exoribonuclease YhaM
1715	 30.71	0	1900314..1903250	-	978	82751497	-	SAB1776c	-	hypothetical protein
1716	 30.24	0	1903240..1904436	-	398	82751498	-	SAB1777c	-	hypothetical protein
1717	 32.17	0	1905520..1905864	-	114	82751499	-	SAB1778c	-	hypothetical protein
1718	 29.96	0	1905933..1907057	-	374	82751500	-	SAB1779c	-	hypothetical protein
1719	 31.83	0	1907236..1907700	-	154	82751501	-	SAB1780c	-	DNA-binding protein
1720	 31.57	0	1908056..1908679	-	207	82751502	-	SAB1781c	-	two-component response regulator protein
1721	 33.96	0	1908701..1909813	-	370	82751503	-	SAB1782c	-	two-component response system sensor histidine kinase
1722	 32.97	0	1909976..1910797	+	273	82751504	-	SAB1783	-	RNA pseudouridylate synthase
1723	 34.85	0	1911248..1912633	-	461	82751505	fumC	SAB1784c	-	fumarate hydratase
1724	 27.42	-1	1912829..1913251	-	140	82751506	-	SAB1785c	-	hypothetical protein
1725	 32.67	0	1913343..1913645	+	100	82751507	-	SAB1786	-	hypothetical protein
1726	 26.80	-1	1913710..1913862	-	50	159162018	-	SAB1787c	-	hypothetical protein
1727	 31.83	0	1913887..1914486	-	199	82751509	-	SAB1788c	-	hypothetical protein
1728	 31.21	0	1914645..1915115	-	156	82751510	-	SAB1789c	-	rRNA methylase-like protein
1729	 36.88	+1	1915120..1916247	-	375	82751511	-	SAB1790c	-	iron-sulfur binding protein
1730	 32.92	0	1916398..1917126	-	242	82751512	glnQ	SAB1791c	-	glutamate ATP-binding ABC transporter
1731	 31.69	0	1917113..1918570	-	485	82751513	-	SAB1792c	-	substrate-binding glutamine ABC transporter
1732	 31.54	0	1918829..1919890	-	353	82751514	-	SAB1793c	-	hypothetical protein
1733	 30.87	0	1928745..1929191	-	148	82751515	perR	SAB1794c	-	peroxide operon regulator
1734	 30.81	0	1929288..1930238	-	316	82751516	-	SAB1795c	-	hypothetical protein
1735	 28.95	-1	1930244..1930699	-	151	82751517	-	SAB1796c	-	bacterioferritin comigratory protein
1736	 36.82	+1	1930780..1932069	+	429	82751518	-	SAB1797	-	glutamate-1-semialdehyde aminotransferase
1737	 31.14	0	1932362..1933456	+	364	82751519	-	SAB1798	-	hypothetical protein
1738	 33.10	0	1933647..1935383	-	578	82751520	-	SAB1799c	-	ATP-binding ABC transporter
1739	 32.60	0	1935673..1936215	-	180	82751521	-	SAB1800c	-	hypothetical protein
1740	 34.01	0	1936518..1937555	-	345	82751522	-	SAB1801c	-	A/G-specific adenine glycosylase DNA repair protein
1741	 34.76	0	1937707..1938684	+	325	82751523	-	SAB1802	-	hypothetical protein
1742	 28.55	-1	1938945..1939781	-	278	82751524	-	SAB1803c	-	hypothetical protein
1743	 30.11	0	1939790..1941307	-	505	82751525	-	SAB1804c	-	hypothetical protein
1744	 28.57	-1	1941615..1942433	-	272	82751526	recX	SAB1805c	-	recombination regulator RecX
1745	 30.74	0	1942694..1943503	-	269	82751527	-	SAB1806c	-	glycosyltransferase
1746	 34.88	0	1943843..1944358	-	171	82751528	-	SAB1807c	-	hypothetical protein
1747	 31.48	0	1944488..1944649	-	53	82751529	-	SAB1808c	-	hypothetical protein
1748	 33.42	0	1944872..1946023	+	383	82751530	-	SAB1809	-	hypothetical protein
1749	 36.35	+1	1946284..1946814	-	176	82751531	-	SAB1810c	-	hypothetical protein
1750	 33.97	0	1946904..1948151	-	415	82751532	-	SAB1811c	-	aminopeptidase
1751	 30.85	0	1948163..1948363	-	66	82751533	-	SAB1812c	-	hypothetical protein
1752	 33.76	0	1948510..1948974	+	154	82751534	-	SAB1813	-	protein tyrosine phosphatase
1753	 33.33	0	1948981..1949256	+	91	82751535	-	SAB1814	-	hypothetical protein
1754	 32.59	0	1949534..1950751	+	405	82751536	-	SAB1815	-	hypothetical protein
1755	 33.81	0	1950864..1951493	-	209	82751537	-	SAB1816c	-	two-component response regulator
1756	 32.18	0	1951483..1952526	-	347	82751538	vraS	SAB1817c	-	two-component sensor histidine kinase
1757	 30.20	0	1952523..1953224	-	233	82751539	-	SAB1818c	-	hypothetical protein
1758	 25.84	-2	1953239..1953625	-	128	82751540	-	SAB1819c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.