IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1529	 35.12	0	1710425..1710871	+	148	82751309	-	SAB1580	-	osmotic stress-related protein
1530	 33.94	0	1710986..1712146	+	386	82751310	-	SAB1581	-	soluble hydrogenase subunit
1531	 34.45	0	1712133..1713737	+	534	82751311	-	SAB1582	-	D-3-phosphoglycerate dehydrogenase
1532	 31.74	0	1713887..1715017	-	376	82751312	-	SAB1583c	-	hypothetical protein
1533	 34.36	0	1715124..1716590	-	488	82751313	-	SAB1584c	-	PTS system N-acetylglucosamine-specific IIABC component
1534	 31.23	0	1716718..1717335	-	205	82751314	-	SAB1585c	-	1-acylglycerol-3-phosphate O-acyltransferase
1535	 34.51	0	1717507..1718781	+	424	82751315	-	SAB1586	-	serine protease
1536	 33.41	0	1718875..1720137	-	420	82751316	tyrS	SAB1587c	-	tyrosyl-tRNA synthetase
1537	 30.35	0	1720518..1721423	+	301	82751317	-	SAB1588	-	penicillin-binding protein 1A
1538	 30.90	0	1721534..1722850	-	438	82751318	-	SAB1589c	-	transposase
1539	 33.50	0	1723135..1724988	-	617	82751319	-	SAB1590c	-	iron-regulated surface protein
1540	 33.59	0	1725040..1725816	-	258	82751320	-	SAB1591c	-	surface-anchored iron-regulated surface protein
1541	 36.45	+1	1726149..1727816	-	555	82751321	fhs	SAB1592c	-	formate--tetrahydrofolate ligase
1542	 36.50	+1	1728256..1729962	-	568	82751322	acsA	SAB1593c	-	acetyl-CoA synthetase
1543	 34.12	0	1730131..1730763	+	210	82751323	acuA	SAB1594	-	acetoin utilization protein
1544	 34.53	0	1730788..1731957	+	389	82751324	acuC	SAB1595	-	acetoin utilization protein
1545	 33.23	0	1732055..1733044	-	329	82751325	ccpA	SAB1596c	-	catabolite control protein A
1546	 33.70	0	1733582..1734673	-	363	82751326	aroA	SAB1597c	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1547	 31.34	0	1735368..1736318	-	316	82751327	-	SAB1598c	-	hypothetical protein
1548	 33.33	0	1736392..1736883	-	163	82751328	-	SAB1599c	-	hypothetical protein
1549	 31.07	0	1736957..1738195	-	412	82751329	murC	SAB1600c	-	UDP-N-acetylmuramate--L-alanine ligase
1550	 34.19	0	1738295..1742125	-	1276	82751330	-	SAB1601c	-	SpoIIIE family cell division protein
1551	 31.49	0	1742146..1742742	-	198	82751331	-	SAB1602c	-	phenylalanyl-tRNA synthetase beta subunit
1552	 30.30	0	1742771..1743628	-	285	82751332	-	SAB1603c	-	hypothetical protein
1553	 33.33	0	1743728..1744039	-	103	82751333	-	SAB1604c	-	thioredoxin family protein
1554	 33.89	0	1744104..1745180	-	358	82751334	-	SAB1605c	-	endo-1,4-beta-glucanase
1555	 27.88	-1	1745267..1745578	+	103	82751335	-	SAB1606	-	hypothetical protein
1556	 34.76	0	1745703..1746545	-	280	82751336	-	SAB1607c	-	hypothetical protein
1557	 31.94	0	1747016..1747660	-	214	82751337	-	SAB1608c	-	tRNA guanine methyltransferase
1558	 34.85	0	1747675..1748466	-	263	82751338	-	SAB1609c	-	hypothetical protein
1559	 32.63	0	1749013..1749861	-	282	82751339	dat	SAB1610c	-	D-alanine aminotransferase
1560	 34.75	0	1749865..1751274	-	469	82751340	-	SAB1611c	-	dipeptidase PepV
1561	 30.02	0	1751872..1752294	-	140	82751341	-	SAB1612c	-	hypothetical protein
1562	 29.74	0	1752311..1753006	-	231	82751342	-	SAB1613c	-	16S RNA pseudouridylate synthase
1563	 32.25	0	1753003..1754664	-	553	82751343	-	SAB1614c	-	polysaccharide transporter
1564	 35.30	0	1755071..1756339	+	422	82751344	-	SAB1615	-	hypothetical protein
1565	 32.69	0	1762651..1762962	-	103	82751345	-	SAB1617c	-	hypothetical protein
1566	 34.29	0	1762984..1765398	-	804	82751346	leuS	SAB1618c	-	leucyl-tRNA synthetase
1567	 35.19	0	1765690..1766871	-	393	82751347	-	SAB1619c	-	multidrug resistance protein B
1568	 36.79	+1	1766981..1767934	+	317	82751348	-	SAB1620	-	hypothetical protein
1569	 32.62	0	1767931..1768494	+	187	82751349	-	SAB1621	-	hypothetical protein
1570	 31.94	0	1768614..1769114	-	166	82751350	rot	SAB1622c	-	repressor of toxins transcriptional regulator
1571	 32.49	0	1769587..1770414	-	275	82751351	-	SAB1623c	-	hypothetical protein
1572	 32.83	0	1770648..1771649	+	333	82751352	-	SAB1624	-	proline oxidase
1573	 33.98	0	1771771..1772235	-	154	82751353	ribH	SAB1625c	-	6,7-dimethyl-8-ribityllumazine synthase
1574	 34.35	0	1772248..1773429	-	393	82751354	ribA	SAB1626c	-	riboflavin biosynthesis protein
1575	 33.18	0	1773440..1774072	-	210	82751355	ribE	SAB1627c	-	riboflavin synthase subunit alpha
1576	 34.48	0	1774079..1775122	-	347	82751356	ribD	SAB1628c	-	riboflavin specific deaminase
1577	 31.07	0	1775603..1777105	-	500	82751357	-	SAB1629c	-	hypothetical protein
1578	 30.79	0	1777627..1777941	+	104	82751358	arsR	SAB1630	-	arsenical resistance operon repressor
1579	 31.25	0	1777941..1779233	+	430	82751359	arsB	SAB1631	-	arsenic efflux pump protein
1580	 34.09	0	1779251..1779646	+	131	82751360	-	SAB1632	-	arsenate reductase
1581	 30.88	0	1780047..1780901	-	284	82751361	-	SAB1633c	-	hypothetical protein
1582	 28.44	-1	1781177..1781401	-	74	82751362	-	SAB1634c	-	hypothetical protein
1583	 28.60	-1	1781585..1782070	+	161	82751363	-	SAB1635	-	DNA-binding protein
1584	 29.73	0	1782183..1782626	+	147	82751364	-	SAB1636	-	hypothetical protein
1585	 27.03	-1	1782613..1783056	-	147	82751365	-	SAB1637c	-	hypothetical protein
1586	 34.03	0	1784413..1785126	-	237	82751366	-	SAB1639c	-	putative translaldolase
1587	 25.74	-2	1785384..1785686	+	100	82751367	-	SAB1640	-	hypothetical protein
1588	 34.01	0	1785864..1786307	+	147	82751368	-	SAB1641	-	intergral membrane protein
1589	 31.64	0	1786304..1786657	+	117	82751369	-	SAB1642	-	hypothetical protein
1590	 34.41	0	1786906..1787739	-	277	82751370	-	SAB1643c	-	aldo-keto reductase family protein
1591	 30.47	0	1787950..1788858	-	302	82751371	-	SAB1644c	-	hypothetical protein
1592	 37.60	+1	1788983..1790176	-	397	161777618	-	SAB1645c	-	S-adenosylmethionine synthetase
1593	 34.59	0	1790547..1792139	+	530	82751373	pckA	SAB1646	-	phosphoenolpyruvate carboxykinase
1594	 38.13	+1	1792436..1793206	-	256	82751374	-	SAB1647c	-	hypothetical protein
1595	 34.83	0	1793187..1793720	-	177	82751375	-	SAB1648c	-	hypothetical protein
1596	 37.98	+1	1793726..1793983	+	85	82751376	-	SAB1649	-	hypothetical protein
1597	 36.63	+1	1793980..1794981	-	333	82751377	-	SAB1650c	-	o-succinylbenzoic acid synthetase
1598	 35.50	0	1794986..1796464	-	492	82751378	-	SAB1651c	-	O-succinylbenzoate-CoA ligase
1599	 33.01	0	1797416..1798030	+	204	82751379	-	SAB1653	-	hypothetical protein
1600	 35.94	0	1798111..1799106	+	331	82751380	-	SAB1654	-	hypothetical protein
1601	 31.58	0	1799182..1799808	+	208	82751381	-	SAB1655	-	lipoprotein
1602	 30.99	0	1799849..1800190	+	113	82751382	-	SAB1656	-	hypothetical protein
1603	 32.29	0	1800291..1800863	+	190	82751383	-	SAB1657	-	hypothetical protein
1604	 27.48	-1	1801196..1801639	-	147	82751384	-	SAB1658c	-	hypothetical protein
1605	 30.89	0	1801639..1802088	-	149	82751385	-	SAB1659c	-	hypothetical protein
1606	 27.69	-1	1802088..1802282	-	64	82751386	-	SAB1660c	-	hypothetical protein
1607	 25.40	-2	1802279..1802530	-	83	82751387	-	SAB1661c	-	hypothetical protein
1608	 29.50	-1	1802530..1802973	-	147	82751388	-	SAB1662c	-	hypothetical protein
1609	 31.02	0	1803492..1805915	+	807	82751389	hysA1	SAB1663	-	hyaluronate lyase precursor
1610	 23.28	-2	1806041..1806418	-	125	82751390	-	SAB1664c	-	hypothetical protein
1611	 37.96	+1	1813003..1814559	-	518	82751391	hsdM	SAB1668c	-	type I restriction-modification system M subunit
1612	 34.03	0	1814922..1815641	-	239	82751392	splF	SAB1669c	-	serine proteinase
1613	 34.55	0	1815810..1816550	-	246	82751393	splE	SAB1670c	-	serine proteinase
1614	 31.94	0	1816651..1817370	-	239	82751394	splC	SAB1671c	-	serine proteinase
1615	 32.92	0	1817428..1818150	-	240	82751395	-	SAB1672c	-	serine proteinase
1616	 30.40	0	1819934..1820512	+	192	82751397	-	SAB1675	-	hypothetical protein
1617	 26.75	-1	1820986..1821684	-	232	82751398	-	SAB1676c	-	hypothetical protein
1618	 27.03	-1	1821681..1822442	-	253	82751399	-	SAB1677c	-	transport protein
1619	 29.73	-1	1822439..1823131	-	230	82751400	-	SAB1678c	-	transport protein
1620	 33.41	0	1823154..1824527	-	457	82751401	-	SAB1679c	-	serine protease precursor
1621	 26.20	-2	1824537..1825055	-	172	82751402	-	SAB1680c	-	hypothetical protein
1622	 29.64	-1	1825071..1826315	-	414	82751403	-	SAB1681c	-	hypothetical protein
1623	 27.45	-1	1826308..1829301	-	997	82751404	-	SAB1682c	-	hypothetical protein
1624	 38.19	+1	1829366..1829509	-	47	82751405	-	SAB1683c	-	hypothetical protein
1625	 29.69	-1	1829951..1830142	+	63	82751406	-	SAB1684	-	hypothetical protein
1626	 35.42	0	1830243..1830386	-	47	82751407	-	SAB1685c	-	hypothetical protein
1627	 31.81	0	1830626..1831609	-	327	82751408	lukD	SAB1686c	-	leukotoxin D subunit
1628	 32.48	0	1831611..1832546	-	311	82751409	lukE	SAB1687c	-	leukotoxin E subunit
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.