IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1495	 33.04	0	1666996..1668021	-	341	82751275	gap	SAB1546c	-	glyceraldehyde 3-phosphate dehydrogenase 2
1496	 34.13	0	1668191..1668814	-	207	82751276	coaE	SAB1547c	-	dephospho-CoA kinase
1497	 32.19	0	1668830..1669702	-	290	82751277	-	SAB1548c	-	formamidopyrimidine-DNA glycosylase
1498	 32.31	0	1669718..1672348	-	876	82751278	polA	SAB1549c	-	DNA polymerase I
1499	 28.97	-1	1672642..1674129	-	495	82751279	-	SAB1550c	-	hypothetical protein
1500	 31.05	0	1674628..1676292	-	554	82751280	phoR	SAB1551c	-	alkaline phosphatase synthesis sensor protein
1501	 33.90	0	1676289..1676993	-	234	82751281	phoP	SAB1552c	-	alkaline phosphatase synthesis transcriptional regulatory protein
1502	 34.99	0	1677382..1678650	-	422	82751282	citC	SAB1553c	-	isocitrate dehydrogenase
1503	 36.36	+1	1678699..1679820	-	373	82751283	citZ	SAB1554c	-	methylcitrate synthase
1504	 34.65	0	1680168..1681529	+	453	82751284	cycA	SAB1555	-	D-serine, D-alanine, glycine transporter
1505	 34.76	0	1681879..1683636	-	585	82751285	pyk	SAB1556c	-	pyruvate kinase
1506	 36.95	+1	1683658..1684626	-	322	82751286	pfkA	SAB1557c	-	6-phosphofructokinase
1507	 34.39	0	1684895..1685839	-	314	82751287	accA	SAB1558c	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1508	 34.62	0	1685839..1686696	-	285	82751288	accD	SAB1559c	-	acetyl-CoA carboxylase subunit beta
1509	 35.77	0	1686891..1688120	-	409	82751289	-	SAB1560c	-	NAD-dependent malic enzyme
1510	 31.49	0	1688570..1691767	-	1065	82751290	dnaE	SAB1561c	-	DNA polymerase III alpha subunit
1511	 35.24	0	1691788..1692729	-	313	82751291	-	SAB1562c	-	hypothetical protein
1512	 33.80	0	1693068..1694366	-	432	82751292	-	SAB1563c	-	DNA-binding protein
1513	 33.33	0	1694571..1694984	+	137	82751293	-	SAB1564	-	hypothetical protein
1514	 40.80	+2	1695062..1695463	+	133	82751294	-	SAB1565	-	hypothetical protein
1515	 33.62	0	1695544..1696233	-	229	82751295	-	SAB1566c	-	metallo-beta-lactamase superfamily protein
1516	 33.52	0	1696387..1697463	+	358	82751296	-	SAB1567	-	Xaa-Pro dipeptidase-like protein
1517	 35.84	0	1697779..1698897	-	372	82751297	ald	SAB1568c	-	alanine dehydrogenase
1518	 35.13	0	1699038..1699538	+	166	82751298	-	SAB1569	-	stress response protein
1519	 35.16	0	1699784..1700986	-	400	82751299	ackA	SAB1570c	-	acetate kinase
1520	 32.07	0	1701074..1702021	-	315	82751300	-	SAB1571c	-	hypothetical protein
1521	 35.35	0	1702144..1702638	-	164	82751301	-	SAB1572c	-	thiol peroxidase
1522	 32.68	0	1702736..1703506	-	256	82751302	-	SAB1573c	-	hypothetical protein
1523	 33.42	0	1703550..1704773	-	407	82751303	-	SAB1574c	-	thiamine biosynthesis protein
1524	 31.94	0	1704773..1705921	-	382	82751304	-	SAB1575c	-	aminotransferase
1525	 31.09	0	1706247..1707941	-	564	82751305	-	SAB1576c	-	septation ring formation regulator EzrA
1526	 36.34	+1	1708078..1708542	+	154	82751306	-	SAB1577	-	hypothetical protein
1527	 35.66	0	1708786..1709388	+	200	82751307	rpsD	SAB1578	-	30S ribosomal protein S4
1528	 32.12	0	1709602..1710345	-	247	82751308	-	SAB1579c	-	hypothetical protein
1529	 35.12	0	1710425..1710871	+	148	82751309	-	SAB1580	-	osmotic stress-related protein
1530	 33.94	0	1710986..1712146	+	386	82751310	-	SAB1581	-	soluble hydrogenase subunit
1531	 34.45	0	1712133..1713737	+	534	82751311	-	SAB1582	-	D-3-phosphoglycerate dehydrogenase
1532	 31.74	0	1713887..1715017	-	376	82751312	-	SAB1583c	-	hypothetical protein
1533	 34.36	0	1715124..1716590	-	488	82751313	-	SAB1584c	-	PTS system N-acetylglucosamine-specific IIABC component
1534	 31.23	0	1716718..1717335	-	205	82751314	-	SAB1585c	-	1-acylglycerol-3-phosphate O-acyltransferase
1535	 34.51	0	1717507..1718781	+	424	82751315	-	SAB1586	-	serine protease
1536	 33.41	0	1718875..1720137	-	420	82751316	tyrS	SAB1587c	-	tyrosyl-tRNA synthetase
1537	 30.35	0	1720518..1721423	+	301	82751317	-	SAB1588	-	penicillin-binding protein 1A
1538	 30.90	0	1721534..1722850	-	438	82751318	-	SAB1589c	-	transposase
1539	 33.50	0	1723135..1724988	-	617	82751319	-	SAB1590c	-	iron-regulated surface protein
1540	 33.59	0	1725040..1725816	-	258	82751320	-	SAB1591c	-	surface-anchored iron-regulated surface protein
1541	 36.45	+1	1726149..1727816	-	555	82751321	fhs	SAB1592c	-	formate--tetrahydrofolate ligase
1542	 36.50	+1	1728256..1729962	-	568	82751322	acsA	SAB1593c	-	acetyl-CoA synthetase
1543	 34.12	0	1730131..1730763	+	210	82751323	acuA	SAB1594	-	acetoin utilization protein
1544	 34.53	0	1730788..1731957	+	389	82751324	acuC	SAB1595	-	acetoin utilization protein
1545	 33.23	0	1732055..1733044	-	329	82751325	ccpA	SAB1596c	-	catabolite control protein A
1546	 33.70	0	1733582..1734673	-	363	82751326	aroA	SAB1597c	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
1547	 31.34	0	1735368..1736318	-	316	82751327	-	SAB1598c	-	hypothetical protein
1548	 33.33	0	1736392..1736883	-	163	82751328	-	SAB1599c	-	hypothetical protein
1549	 31.07	0	1736957..1738195	-	412	82751329	murC	SAB1600c	-	UDP-N-acetylmuramate--L-alanine ligase
1550	 34.19	0	1738295..1742125	-	1276	82751330	-	SAB1601c	-	SpoIIIE family cell division protein
1551	 31.49	0	1742146..1742742	-	198	82751331	-	SAB1602c	-	phenylalanyl-tRNA synthetase beta subunit
1552	 30.30	0	1742771..1743628	-	285	82751332	-	SAB1603c	-	hypothetical protein
1553	 33.33	0	1743728..1744039	-	103	82751333	-	SAB1604c	-	thioredoxin family protein
1554	 33.89	0	1744104..1745180	-	358	82751334	-	SAB1605c	-	endo-1,4-beta-glucanase
1555	 27.88	-1	1745267..1745578	+	103	82751335	-	SAB1606	-	hypothetical protein
1556	 34.76	0	1745703..1746545	-	280	82751336	-	SAB1607c	-	hypothetical protein
1557	 31.94	0	1747016..1747660	-	214	82751337	-	SAB1608c	-	tRNA guanine methyltransferase
1558	 34.85	0	1747675..1748466	-	263	82751338	-	SAB1609c	-	hypothetical protein
1559	 32.63	0	1749013..1749861	-	282	82751339	dat	SAB1610c	-	D-alanine aminotransferase
1560	 34.75	0	1749865..1751274	-	469	82751340	-	SAB1611c	-	dipeptidase PepV
1561	 30.02	0	1751872..1752294	-	140	82751341	-	SAB1612c	-	hypothetical protein
1562	 29.74	0	1752311..1753006	-	231	82751342	-	SAB1613c	-	16S RNA pseudouridylate synthase
1563	 32.25	0	1753003..1754664	-	553	82751343	-	SAB1614c	-	polysaccharide transporter
1564	 35.30	0	1755071..1756339	+	422	82751344	-	SAB1615	-	hypothetical protein
1565	 32.69	0	1762651..1762962	-	103	82751345	-	SAB1617c	-	hypothetical protein
1566	 34.29	0	1762984..1765398	-	804	82751346	leuS	SAB1618c	-	leucyl-tRNA synthetase
1567	 35.19	0	1765690..1766871	-	393	82751347	-	SAB1619c	-	multidrug resistance protein B
1568	 36.79	+1	1766981..1767934	+	317	82751348	-	SAB1620	-	hypothetical protein
1569	 32.62	0	1767931..1768494	+	187	82751349	-	SAB1621	-	hypothetical protein
1570	 31.94	0	1768614..1769114	-	166	82751350	rot	SAB1622c	-	repressor of toxins transcriptional regulator
1571	 32.49	0	1769587..1770414	-	275	82751351	-	SAB1623c	-	hypothetical protein
1572	 32.83	0	1770648..1771649	+	333	82751352	-	SAB1624	-	proline oxidase
1573	 33.98	0	1771771..1772235	-	154	82751353	ribH	SAB1625c	-	6,7-dimethyl-8-ribityllumazine synthase
1574	 34.35	0	1772248..1773429	-	393	82751354	ribA	SAB1626c	-	riboflavin biosynthesis protein
1575	 33.18	0	1773440..1774072	-	210	82751355	ribE	SAB1627c	-	riboflavin synthase subunit alpha
1576	 34.48	0	1774079..1775122	-	347	82751356	ribD	SAB1628c	-	riboflavin specific deaminase
1577	 31.07	0	1775603..1777105	-	500	82751357	-	SAB1629c	-	hypothetical protein
1578	 30.79	0	1777627..1777941	+	104	82751358	arsR	SAB1630	-	arsenical resistance operon repressor
1579	 31.25	0	1777941..1779233	+	430	82751359	arsB	SAB1631	-	arsenic efflux pump protein
1580	 34.09	0	1779251..1779646	+	131	82751360	-	SAB1632	-	arsenate reductase
1581	 30.88	0	1780047..1780901	-	284	82751361	-	SAB1633c	-	hypothetical protein
1582	 28.44	-1	1781177..1781401	-	74	82751362	-	SAB1634c	-	hypothetical protein
1583	 28.60	-1	1781585..1782070	+	161	82751363	-	SAB1635	-	DNA-binding protein
1584	 29.73	0	1782183..1782626	+	147	82751364	-	SAB1636	-	hypothetical protein
1585	 27.03	-1	1782613..1783056	-	147	82751365	-	SAB1637c	-	hypothetical protein
1586	 34.03	0	1784413..1785126	-	237	82751366	-	SAB1639c	-	putative translaldolase
1587	 25.74	-2	1785384..1785686	+	100	82751367	-	SAB1640	-	hypothetical protein
1588	 34.01	0	1785864..1786307	+	147	82751368	-	SAB1641	-	intergral membrane protein
1589	 31.64	0	1786304..1786657	+	117	82751369	-	SAB1642	-	hypothetical protein
1590	 34.41	0	1786906..1787739	-	277	82751370	-	SAB1643c	-	aldo-keto reductase family protein
1591	 30.47	0	1787950..1788858	-	302	82751371	-	SAB1644c	-	hypothetical protein
1592	 37.60	+1	1788983..1790176	-	397	161777618	-	SAB1645c	-	S-adenosylmethionine synthetase
1593	 34.59	0	1790547..1792139	+	530	82751373	pckA	SAB1646	-	phosphoenolpyruvate carboxykinase
1594	 38.13	+1	1792436..1793206	-	256	82751374	-	SAB1647c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.