IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1416	 33.68	0	1582623..1583192	-	189	82751196	-	SAB1466c	-	nicotinate-nucleotide adenylyltransferase
1417	 29.21	-1	1583195..1583485	-	96	82751197	-	SAB1467c	-	hypothetical protein
1418	 31.10	0	1583489..1584295	-	268	82751198	aroE	SAB1468c	-	shikimate 5-dehydrogenase
1419	 33.79	0	1584309..1585409	-	366	82751199	-	SAB1469c	-	GTP-binding protein YqeH
1420	 32.95	0	1585410..1585937	-	175	82751200	-	SAB1470c	-	hypothetical protein
1421	 32.90	0	1585957..1586643	-	228	82751201	-	SAB1471c	-	hypothetical protein
1422	 26.67	-1	1586955..1587224	+	89	82751202	-	SAB1472	-	hypothetical protein
1423	 26.70	-1	1588596..1589816	-	406	82751203	-	SAB1474c	-	hypothetical protein
1424	 33.33	0	1590107..1591336	-	409	82751204	-	SAB1475c	-	hypothetical protein
1425	 35.06	0	1591348..1592100	-	250	82751205	-	SAB1476c	-	hypothetical protein
1426	 35.76	0	1592100..1593461	-	453	82751206	accC	SAB1477c	-	acetyl-CoA biotin carboxylase
1427	 31.33	0	1593475..1593924	-	149	82751207	accB	SAB1478c	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
1428	 34.72	0	1593926..1594936	-	336	82751208	-	SAB1479c	-	hypothetical protein
1429	 33.20	0	1594926..1595684	-	252	82751209	-	SAB1480c	-	hypothetical protein
1430	 33.33	0	1595986..1596462	-	158	82751210	greA	SAB1481c	-	transcription elongation factor
1431	 33.33	0	1596490..1597113	-	207	82751211	udk	SAB1482c	-	uridine kinase
1432	 35.46	0	1597113..1598381	-	422	82751212	-	SAB1483c	-	proteinase
1433	 34.30	0	1598393..1599322	-	309	82751213	-	SAB1484c	-	proteinase
1434	 28.95	-1	1599319..1599957	-	212	82751214	-	SAB1485c	-	hypothetical protein
1435	 32.36	0	1600242..1600550	-	102	82751215	-	SAB1486c	-	hypothetical protein
1436	 32.63	0	1600565..1600993	-	142	82751216	-	SAB1487c	-	hypothetical protein
1437	 30.27	0	1600997..1601257	-	86	82751217	-	SAB1488c	-	hypothetical protein
1438	 35.23	0	1601320..1603950	-	876	82751218	alaS	SAB1489c	-	alanyl-tRNA synthetase
1439	 32.81	0	1604293..1606770	-	825	82751219	-	SAB1490c	-	deoxyribonuclease
1440	 31.09	0	1606772..1607440	-	222	82751220	-	SAB1491c	-	hypothetical protein
1441	 34.67	0	1607906..1609024	-	372	82751221	trmU	SAB1492c	-	5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
1442	 34.65	0	1609025..1610167	-	380	82751222	-	SAB1493c	-	iron-sulfur cofactor synthesis protein
1443	 36.19	0	1610479..1611492	+	337	82751223	-	SAB1494	-	oxygenase
1444	 25.93	-2	1611680..1611895	+	71	82751224	-	SAB1495	-	hypothetical protein
1445	 34.28	0	1612157..1612579	-	140	82751225	-	SAB1496c	-	hypothetical protein
1446	 35.76	0	1612664..1613938	+	424	82751226	-	SAB1497	-	recombination factor protein RarA
1447	 32.69	0	1614099..1614872	-	257	82751227	-	SAB1498c	-	hypothetical protein
1448	 35.77	0	1615333..1617099	-	588	82751228	aspS	SAB1499c	-	aspartyl-tRNA synthetase
1449	 32.86	0	1617115..1618377	-	420	82751229	hisS	SAB1500c	-	histidyl-tRNA synthetase
1450	 33.56	0	1618838..1619713	-	291	82751230	-	SAB1501c	-	N-acetylmuramoyl-L-alanine amidase
1451	 32.01	0	1619710..1620162	-	150	82751231	dtd	SAB1502c	-	D-tyrosyl-tRNA deacylase
1452	 34.42	0	1620174..1622384	-	736	82751232	relA	SAB1503c	-	GTP pyrophosphokinase
1453	 34.87	0	1622791..1623309	-	172	82751233	apt	SAB1504c	-	adenine phosphoribosyltransferase
1454	 32.50	0	1623331..1625604	-	757	82751234	-	SAB1505c	-	single-strand DNA-specific exonuclease
1455	 32.28	0	1625807..1628086	-	759	82751235	secF	SAB1506c	-	bifunctional preprotein translocase subunit SecD/SecF
1456	 31.80	0	1628361..1628621	-	86	82751236	-	SAB1507c	-	hypothetical protein
1457	 35.79	0	1628640..1629779	-	379	82751237	tgt	SAB1508c	-	queuine tRNA-ribosyltransferase
1458	 33.43	0	1629802..1630866	-	354	82751238	queA	SAB1509c	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1459	 37.01	+1	1630829..1631833	-	334	82751239	ruvB	SAB1510c	-	Holliday junction DNA helicase B
1460	 33.33	0	1631865..1632467	-	200	82751240	ruvA	SAB1511c	-	Holliday junction DNA helicase
1461	 29.19	-1	1632481..1632939	-	152	82751241	-	SAB1512c	-	hypothetical protein
1462	 36.74	+1	1632949..1634241	-	430	82751242	obgE	SAB1513c	-	GTPase ObgE
1463	 38.25	+1	1634464..1634748	-	94	82751243	rpmA	SAB1514c	-	50S ribosomal protein L27
1464	 33.96	0	1634760..1635080	-	106	82751244	-	SAB1515c	-	hypothetical protein
1465	 33.98	0	1635086..1635394	-	102	82751245	rplU	SAB1516c	-	50S ribosomal protein L21
1466	 29.19	-1	1635561..1636091	-	176	82751246	-	SAB1517c	-	hypothetical protein
1467	 31.08	0	1636091..1636933	-	280	82751247	-	SAB1518c	-	hypothetical protein
1468	 29.11	-1	1637324..1637797	-	157	82751248	-	SAB1519c	-	hypothetical protein
1469	 36.14	0	1638271..1638555	-	94	82751249	-	SAB1520c	-	hypothetical protein
1470	 32.31	0	1638623..1639309	-	228	82751250	radC	SAB1521c	-	DNA repair protein RadC
1471	 28.52	-1	1639412..1640014	-	200	82751251	-	SAB1522c	-	leader peptidase protein
1472	 32.78	0	1640282..1641553	-	423	82751252	folC	SAB1523c	-	folylpolyglutamate synthase
1473	 34.70	0	1641566..1644196	-	876	82751253	valS	SAB1524c	-	valyl-tRNA synthetase
1474	 32.80	0	1644600..1645160	+	186	82751254	tag	SAB1525	-	DNA-3-methyladenine glycosidase
1475	 30.07	0	1645383..1646456	-	357	82751255	-	SAB1526c	-	hypothetical protein
1476	 36.83	+1	1646651..1647937	-	428	82751256	hemL	SAB1527c	-	glutamate-1-semialdehyde aminotransferase
1477	 35.38	0	1647985..1648959	-	324	82751257	hemB	SAB1528c	-	delta-aminolevulinic acid dehydratase
1478	 30.19	0	1648962..1649630	-	222	82751258	hemD	SAB1529c	-	uroporphyrinogen III synthase
1479	 34.52	0	1649652..1650578	-	308	82751259	hemC	SAB1530c	-	porphobilinogen deaminase
1480	 28.43	-1	1650620..1651435	-	271	82751260	-	SAB1531c	-	membrane uroporphyrinogen III methylase
1481	 33.48	0	1651457..1652803	-	448	82751261	hemA	SAB1532c	-	glutamyl-tRNA reductase
1482	 28.93	-1	1653020..1653610	-	196	82751262	-	SAB1533c	-	GTPase EngB
1483	 34.13	0	1653764..1655026	-	420	82751263	clpX	SAB1534c	-	ATP-dependent protease ATP-binding subunit
1484	 33.72	0	1655177..1656478	-	433	82751264	tig	SAB1535c	-	trigger factor
1485	 29.03	-1	1656641..1657570	-	309	82751265	-	SAB1536c	-	hypothetical protein
1486	 32.84	0	1657589..1658197	-	202	82751266	-	SAB1537c	-	hypothetical protein
1487	 36.41	+1	1658339..1658695	-	118	82751267	rplT	SAB1538c	-	50S ribosomal protein L20
1488	 35.32	0	1658742..1658942	-	66	82751268	rpmI	SAB1539c	-	50S ribosomal protein L35
1489	 34.66	0	1658971..1659498	-	175	82751269	infC	SAB1540c	-	translation initiation factor IF-3
1490	 35.07	0	1659727..1661220	-	497	82751270	lysP	SAB1541c	-	lysine specific permease
1491	 35.14	0	1661647..1663584	-	645	82751271	thrS	SAB1542c	-	threonyl-tRNA synthetase
1492	 34.42	0	1663995..1664915	-	306	82751272	dnaI	SAB1543c	-	primosomal protein DnaI
1493	 32.76	0	1664915..1666315	-	466	82751273	dnaB	SAB1544c	-	chromosome replication initiation and membrane attachment protein
1494	 35.46	0	1666316..1666786	-	156	82751274	-	SAB1545c	-	transcriptional regulator NrdR
1495	 33.04	0	1666996..1668021	-	341	82751275	gap	SAB1546c	-	glyceraldehyde 3-phosphate dehydrogenase 2
1496	 34.13	0	1668191..1668814	-	207	82751276	coaE	SAB1547c	-	dephospho-CoA kinase
1497	 32.19	0	1668830..1669702	-	290	82751277	-	SAB1548c	-	formamidopyrimidine-DNA glycosylase
1498	 32.31	0	1669718..1672348	-	876	82751278	polA	SAB1549c	-	DNA polymerase I
1499	 28.97	-1	1672642..1674129	-	495	82751279	-	SAB1550c	-	hypothetical protein
1500	 31.05	0	1674628..1676292	-	554	82751280	phoR	SAB1551c	-	alkaline phosphatase synthesis sensor protein
1501	 33.90	0	1676289..1676993	-	234	82751281	phoP	SAB1552c	-	alkaline phosphatase synthesis transcriptional regulatory protein
1502	 34.99	0	1677382..1678650	-	422	82751282	citC	SAB1553c	-	isocitrate dehydrogenase
1503	 36.36	+1	1678699..1679820	-	373	82751283	citZ	SAB1554c	-	methylcitrate synthase
1504	 34.65	0	1680168..1681529	+	453	82751284	cycA	SAB1555	-	D-serine, D-alanine, glycine transporter
1505	 34.76	0	1681879..1683636	-	585	82751285	pyk	SAB1556c	-	pyruvate kinase
1506	 36.95	+1	1683658..1684626	-	322	82751286	pfkA	SAB1557c	-	6-phosphofructokinase
1507	 34.39	0	1684895..1685839	-	314	82751287	accA	SAB1558c	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1508	 34.62	0	1685839..1686696	-	285	82751288	accD	SAB1559c	-	acetyl-CoA carboxylase subunit beta
1509	 35.77	0	1686891..1688120	-	409	82751289	-	SAB1560c	-	NAD-dependent malic enzyme
1510	 31.49	0	1688570..1691767	-	1065	82751290	dnaE	SAB1561c	-	DNA polymerase III alpha subunit
1511	 35.24	0	1691788..1692729	-	313	82751291	-	SAB1562c	-	hypothetical protein
1512	 33.80	0	1693068..1694366	-	432	82751292	-	SAB1563c	-	DNA-binding protein
1513	 33.33	0	1694571..1694984	+	137	82751293	-	SAB1564	-	hypothetical protein
1514	 40.80	+2	1695062..1695463	+	133	82751294	-	SAB1565	-	hypothetical protein
1515	 33.62	0	1695544..1696233	-	229	82751295	-	SAB1566c	-	metallo-beta-lactamase superfamily protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.