IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
97	 32.08	0	125121..125678	+	185	82749874	capM	SAB0102	-	capsular polysaccharide synthesis enzyme CapM
98	 33.11	0	125678..126565	+	295	82749875	capN	SAB0103	-	capsular polysaccharide synthesis enzyme CapN
99	 34.05	0	126619..127881	+	420	82749876	capO	SAB0104	-	capsular polysaccharide synthesis enzyme CapO
100	 36.14	0	127928..129103	+	391	82749877	capP	SAB0105	-	capsular polysaccharide synthesis enzyme CapP
101	 30.99	0	129501..129884	-	127	82749878	-	SAB0107c	-	hypothetical protein
102	 36.02	0	130311..131798	+	495	82749879	aldA	SAB0108	-	aldehyde dehdydrogenase
103	 32.19	0	132442..133401	+	319	82749880	-	SAB0109	-	cation-efflux system membrane protein
104	 31.37	0	133462..133665	-	67	82749881	-	SAB0110c	-	hypothetical protein
105	 33.72	0	133844..134356	+	170	82749882	-	SAB0111	-	hypothetical protein
106	 35.22	0	134697..135437	+	246	82749883	-	SAB0112	-	nitrate/nitrite system ATP-binding ABC transporter
107	 37.03	+1	135451..136425	+	324	82749884	-	SAB0113	-	lipoprotein
108	 35.43	0	136422..137183	+	253	82749885	-	SAB0114	-	ABC transporter permease
109	 35.47	0	137196..138227	+	343	82749886	-	SAB0115	-	hypothetical protein
110	 34.51	0	138444..138698	+	84	82749887	-	SAB0116	-	hypothetical protein
111	 34.93	0	138873..140000	+	375	82749888	-	SAB0117	-	formate dehydrogenase
112	 32.69	0	140385..141635	+	416	82749889	-	SAB0118	-	integral membrane transport protein
113	 34.95	0	142064..149254	+	2396	82749890	-	SAB0119	-	surfactin/siderophore synthetase
114	 33.80	0	149267..149911	+	214	82749891	-	SAB0120	-	4'-phosphopantetheinyl transferase superfamily protein
115	 35.35	0	150240..150734	-	164	82749892	-	SAB0121c	-	hypothetical protein
116	 34.89	0	151005..151775	-	256	82749893	-	SAB0122c	-	acetylglutamate kinase
117	 37.12	+1	151791..153032	-	413	82749894	argJ	SAB0123c	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
118	 37.89	+1	154114..155298	-	394	82749895	-	SAB0125c	-	ornithine aminotransferase
119	 32.82	0	155547..156902	-	451	82749896	-	SAB0126c	-	branched chain amino acid ABC transporter carrier protein
120	 35.48	0	157179..157736	-	185	82749897	-	SAB0127c	-	hydrolase
121	 36.26	0	157802..159442	-	546	82749898	-	SAB0128c	-	pyruvate decarboxylase
122	 38.12	+1	159714..161759	-	681	82749899	glcA	SAB0129c	-	phosphotransferase system enzyme II glucose-specific factor IIA
123	 35.07	0	162345..163379	+	344	82749900	-	SAB0130	-	hypothetical protein
124	 38.11	+1	163397..164296	+	299	82749901	murQ	SAB0131	-	N-acetylmuramic acid-6-phosphate etherase
125	 37.94	+1	164308..165762	+	484	82749902	-	SAB0132	-	PTS system sucrose-specific IIBC component
126	 34.25	0	165765..166640	+	291	82749903	-	SAB0133	-	RpiR family transcriptional regulator
127	 28.72	-1	166836..167117	-	93	82749904	-	SAB0134c	-	hypothetical protein
128	 33.01	0	167330..170119	+	929	82749905	-	SAB0135	-	type I restriction enzyme restriction chain
129	 29.17	-1	170266..170865	-	199	82749906	-	SAB0136c	-	hypothetical protein
130	 30.10	0	170989..172101	+	370	82749907	-	SAB0137	-	hypothetical protein
131	 31.42	0	172098..172778	+	226	82749908	-	SAB0138	-	ABC transporter ATP-binding protein
132	 30.70	0	172967..173953	+	328	82749909	-	SAB0139	-	ABC transporter ATP-binding protein
133	 41.44	+2	174161..174382	+	73	82749910	-	SAB0140	-	hypothetical protein
134	 23.31	-2	174453..176138	+	561	82749911	-	SAB0141	-	hypothetical protein
135	 25.68	-2	176196..176639	+	147	82749912	-	SAB0142	-	hypothetical protein
136	 26.69	-1	176651..177373	+	240	82749913	-	SAB0143	-	ABC transporter ATP-binding protein
137	 32.52	0	179783..181261	+	492	82749914	-	SAB0145	-	oligopeptide ABC transporter permease protein
138	 34.11	0	181267..182430	+	387	82749915	-	SAB0146	-	oligopeptide ABC transporter
139	 33.56	0	182447..184222	+	591	82749916	-	SAB0147	-	RGD-containing lipoprotein
140	 38.32	+1	184260..186266	+	668	82749917	-	SAB0148	-	gamma-glutamyltransferase
141	 33.33	0	186804..187430	-	208	161777622	-	SAB0149c	-	azoreductase
142	 35.58	0	187639..188217	+	192	82749919	-	SAB0150	-	hypothetical protein
143	 34.88	0	188600..189697	+	365	82749920	-	SAB0151	-	multiple sugar-binding transport ATP-binding protein
144	 34.12	0	189710..190981	+	423	82749921	-	SAB0152	-	maltose/maltodextrin transport system protein
145	 35.07	0	190984..192252	+	422	82749922	-	SAB0153	-	maltose/maltodextrin transport permease protein
146	 33.93	0	192254..193093	+	279	82749923	-	SAB0154	-	maltose/maltodextrin transport system protein
147	 42.25	+2	193135..193392	+	85	82749924	-	SAB0155	-	hypothetical protein
148	 38.98	+1	193451..194530	+	359	82749925	-	SAB0156	-	NADH-dependent dehydrogenase
149	 39.77	+2	194555..195595	+	346	82749926	-	SAB0157	-	NADH-dependent dehydrogenase
150	 35.91	0	195650..196618	+	322	82749927	-	SAB0158	-	hypothetical protein
151	 26.06	-2	196979..197473	-	164	82749928	-	SAB0159c	-	hypothetical protein
152	 35.65	0	197706..199085	+	459	82749929	uhpT	SAB0160	-	sugar phosphate antiporter
153	 33.07	0	199444..200202	-	252	82749930	-	SAB0161c	-	two-component response regulator
154	 32.88	0	200195..201751	-	518	82749931	-	SAB0162c	-	two-component sensor histidine kinase
155	 34.26	0	201748..202716	-	322	82749932	-	SAB0163c	-	periplasmic iron binding protein
156	 36.67	+1	203304..205553	+	749	82749933	-	SAB0164	-	formate acetyltransferase
157	 35.98	0	205576..206331	+	251	82749934	-	SAB0165	-	formate acetyltransferase activating enzyme
158	 32.36	0	206321..206629	+	102	82749935	-	SAB0166	-	hypothetical protein
159	 30.78	0	206667..208430	+	587	82749936	-	SAB0167	-	hypothetical protein
160	 31.88	0	208595..208939	-	114	82749937	-	SAB0168c	-	hyothetical protein
161	 35.40	0	209129..211012	+	627	82749938	-	SAB0169	-	staphylocoagulase precursor
162	 42.55	+2	211599..212792	-	397	82749939	-	SAB0170c	-	3-ketoacyl-CoA transferase
163	 37.53	+1	212813..215074	-	753	82749940	-	SAB0171c	-	3-hydroxyacyl-CoA dehydrogenase
164	 37.38	+1	216583..218088	-	501	82749941	-	SAB0173c	-	acyl-CoA synthetase
165	 36.81	+1	218114..219694	-	526	82749942	-	SAB0174c	-	acetyl-CoA/acetoacetyl-CoA transferase
166	 34.07	0	220045..221274	+	409	82749943	-	SAB0175	-	hypothetical protein
167	 31.50	0	221588..223063	-	491	82749944	-	SAB0176c	-	peptide ABC transporter
168	 35.57	0	223261..223617	-	118	82749945	-	SAB0177c	-	hypothetical protein
169	 25.86	-2	223774..223947	-	57	82749946	-	SAB0178c	-	hypothetical protein
170	 34.64	0	223973..225118	-	381	82749947	-	SAB0179c	-	flavohemoprotein
171	 37.21	+1	225690..226643	+	317	82749948	-	SAB0180	-	L-lactate dehydrogenase
172	 38.99	+1	226964..228412	-	482	82749949	-	SAB0181c	-	phosphotransferase system enzyme II
173	 39.42	+1	228854..229789	+	311	82749950	-	SAB0182	-	inosine-uridine preferring nucleoside hydrolase family protein
174	 34.83	0	232214..232681	+	155	82749951	-	SAB0184	-	phosphotransferase system enzyme
175	 32.42	0	232704..232922	+	72	82749952	-	SAB0185	-	phosphotransferase system galactitol-specific enzyme II, B component
176	 36.75	+1	233205..234464	+	419	82749953	-	SAB0186	-	phosphotransferase system galactitol-specific enzyme II, C component
177	 36.65	+1	234482..235537	+	351	82749954	-	SAB0187	-	zinc-binding sorbitol dehydrogenase
178	 30.61	0	235539..235685	+	48	82749955	-	SAB0188	-	hypothetical protein
179	 37.55	+1	235709..236752	+	347	82749956	-	SAB0189	-	zinc-binding sorbitol dehydrogenase
180	 32.78	0	237280..237996	+	238	82749957	-	SAB0190	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
181	 32.63	0	239037..240731	+	564	82749958	-	SAB0192	-	teichoic acid biosynthesis protein B
182	 33.76	0	241159..242328	+	389	82749959	-	SAB0193	-	teichoic acid biosynthesis protein F
183	 32.50	0	242604..243320	+	238	82749960	ispD	SAB0194	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
184	 33.24	0	243313..244338	+	341	82749961	-	SAB0195	-	xylitol dehydrogenase
185	 32.03	0	244360..246048	+	562	82749962	-	SAB0196	-	teichoic acid biosynthesis protein B
186	 32.35	0	246081..247802	+	573	82749963	-	SAB0197	-	glycosyl transferase
187	 32.15	0	247946..248620	+	224	82749964	scdA	SAB0198	-	cell wall biosynthesis protein ScdA
188	 35.67	0	248866..250620	+	584	82749965	lytS	SAB0199	-	two-component sensor histidine kinase
189	 31.31	0	250623..251363	+	246	82749966	lytR	SAB0200	-	two-component sensor histidine kinase
190	 34.46	0	251476..251919	+	147	82749967	lrgA	SAB0201	-	murein hydrolase regulator LrgA
191	 36.47	+1	251912..252613	+	233	82749968	lrgB	SAB0202	-	antiholin-like protein LrgB
192	 33.19	0	252721..253425	-	234	82749969	-	SAB0203c	-	GntR family transcriptional regulator
193	 34.85	0	253574..254365	+	263	82749970	-	SAB0204	-	PTS system transport protein
194	 36.52	+1	254405..255817	+	470	82749971	bglA	SAB0205	-	6-phospho-beta-glucosidase
195	 40.48	+2	255881..256174	+	97	82749972	-	SAB0206	-	hypothetical protein
196	 34.12	0	256336..257097	-	253	82749973	-	SAB0207c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.