IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1349	 30.26	0	1520565..1520954	-	129	82751129	nusB	SAB1397c	-	transcription antitermination protein NusB
1350	 29.20	-1	1521014..1521376	-	120	82751130	-	SAB1398c	-	hypothetical protein
1351	 36.58	+1	1521391..1522746	-	451	82751131	accC	SAB1399c	-	acetyl-CoA carboxylase biotin carboxylase subunit
1352	 35.70	0	1522746..1523210	-	154	82751132	accB	SAB1400c	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1353	 32.97	0	1523684..1524241	-	185	82751133	efp	SAB1401c	-	elongation factor P
1354	 32.39	0	1524267..1525328	-	353	82751134	-	SAB1402c	-	proline dipeptidase
1355	 27.84	-1	1525433..1526014	+	193	82751135	-	SAB1403	-	hypothetical protein
1356	 28.77	-1	1526028..1526246	+	72	82751136	-	SAB1404	-	hypothetical protein
1357	 34.78	0	1526310..1527140	-	276	82751137	-	SAB1405c	-	lipoate-protein ligase A
1358	 33.85	0	1527298..1527684	+	128	82751138	-	SAB1406	-	hypothetical protein
1359	 34.62	0	1528048..1529520	-	490	82751139	-	SAB1407c	-	glycine dehydrogenase subunit 2
1360	 34.59	0	1529513..1530868	-	451	82751140	-	SAB1408c	-	glycine dehydrogenase subunit 1
1361	 31.59	0	1530879..1531970	-	363	82751141	gcvT	SAB1409c	-	glycine cleavage system aminomethyltransferase T
1362	 28.38	-1	1532129..1532653	-	174	82751142	-	SAB1410c	-	hypothetical protein
1363	 26.92	-1	1532886..1533353	-	155	82751143	-	SAB1411c	-	hypothetical protein
1364	 30.00	0	1533301..1533600	-	99	82751144	-	SAB1412c	-	hypothetical protein
1365	 26.17	-2	1533587..1534033	-	148	82751145	-	SAB1413c	-	hypothetical protein
1366	 29.17	-1	1534011..1534322	-	103	82751146	-	SAB1414c	-	exogenous DNA-binding protein
1367	 31.08	0	1535378..1536352	-	324	82751147	-	SAB1416c	-	late competence protein
1368	 32.53	0	1536404..1537027	-	207	82751148	-	SAB1417c	-	metallo-beta-lactamase superfamily protein
1369	 31.21	0	1537024..1537353	-	109	82751149	-	SAB1418c	-	hypothetical protein
1370	 34.65	0	1537353..1538339	-	328	82751150	glkA	SAB1419c	-	glucokinase
1371	 26.47	-1	1538336..1538539	-	67	82751151	-	SAB1420c	-	hypothetical protein
1372	 27.53	-1	1538520..1539983	-	487	82751152	-	SAB1421c	-	hypothetical protein
1373	 29.81	0	1539995..1540534	-	179	82751153	-	SAB1422c	-	hypothetical protein
1374	 34.00	0	1540743..1540892	-	49	82751154	rpmG	SAB1423c	-	50S ribosomal protein L33
1375	 33.33	0	1541005..1543080	-	691	82751155	pbpF	SAB1424c	-	penicillin-binding protein 3
1376	 34.83	0	1543201..1543800	-	199	82751156	sodA	SAB1425c	-	superoxide dismutase
1377	 28.47	-1	1544076..1544486	-	136	82751157	zur	SAB1426c	-	zinc-specific metalloregulator
1378	 32.07	0	1544473..1545345	-	290	82751158	mreB	SAB1427c	-	ABC transporter protein
1379	 30.03	0	1545378..1546163	-	261	82751159	mreA	SAB1428c	-	ABC transporter protein
1380	 33.56	0	1546289..1547179	-	296	82751160	-	SAB1429c	-	endonuclease IV
1381	 32.59	0	1547189..1548535	-	448	82751161	-	SAB1430c	-	ATP-dependent RNA helicase
1382	 30.97	0	1548649..1549749	-	366	82751162	-	SAB1431c	-	hypothetical protein
1383	 32.01	0	1549752..1550429	-	225	82751163	-	SAB1432c	-	hypothetical protein
1384	 33.88	0	1550560..1551666	-	368	82751164	rpoD	SAB1433c	-	RNA polymerase sigma factor RpoD
1385	 32.00	0	1551890..1553689	-	599	82751165	dnaG	SAB1434c	-	DNA primase
1386	 32.72	0	1553750..1554568	-	272	82751166	-	SAB1435c	-	hypothetical protein
1387	 30.37	0	1554579..1555118	-	179	82751167	-	SAB1436c	-	hypothetical protein
1388	 34.41	0	1555537..1556928	+	463	82751168	glyS	SAB1437	-	glycyl-tRNA synthetase
1389	 32.27	0	1557079..1557831	-	250	82751169	-	SAB1438c	-	recombination protein
1390	 33.00	0	1557853..1558752	-	299	82751170	era	SAB1439c	-	GTP-binding protein Era
1391	 35.56	0	1558753..1559157	-	134	82751171	cdd	SAB1440c	-	cytidine deaminase
1392	 28.70	-1	1559168..1559512	-	114	82751172	-	SAB1441c	-	diacylglycerol kinase
1393	 32.05	0	1559515..1559982	-	155	82751173	-	SAB1442c	-	hypothetical protein
1394	 35.23	0	1559983..1560930	-	315	82751174	-	SAB1443c	-	phosphate starvation-induced protein
1395	 32.19	0	1561230..1561928	-	232	82751175	-	SAB1444c	-	hypothetical protein
1396	 37.47	+1	1561945..1562934	-	329	82751176	-	SAB1445c	-	hypothetical protein
1397	 32.20	0	1562952..1563659	-	235	82751177	-	SAB1446c	-	hypothetical protein
1398	 32.20	0	1563879..1564055	-	58	82751178	rpsU	SAB1447c	-	30S ribosomal protein S21
1399	 34.60	0	1564348..1565694	-	448	82751179	-	SAB1448c	-	hypothetical protein
1400	 31.61	0	1565701..1566453	-	250	82751180	-	SAB1449c	-	hypothetical protein
1401	 34.72	0	1566455..1567393	-	312	82751181	-	SAB1450c	-	methyltransferase
1402	 35.70	0	1567397..1568536	-	379	82751182	dnaJ	SAB1451c	-	chaperone protein
1403	 35.46	0	1568672..1570504	-	610	82751183	dnaK	SAB1452c	-	chaperone protein
1404	 30.78	0	1570573..1571199	-	208	82751184	grpE	SAB1453c	-	heat shock molecular chaperone protein
1405	 28.83	-1	1571231..1572208	-	325	82751185	hrcA	SAB1454c	-	heat-inducible transcription repressor
1406	 32.44	0	1572308..1573432	-	374	82751186	-	SAB1455c	-	coproporphyrinogen III oxidase
1407	 38.89	+1	1573604..1573855	-	83	82751187	-	SAB1456c	-	hypothetical protein
1408	 34.05	0	1573993..1575816	-	607	82751188	lepA	SAB1457c	-	GTP-binding protein LepA
1409	 31.35	0	1576162..1576413	+	83	82751189	rpsT	SAB1458	-	30S ribosomal protein S20
1410	 26.97	-1	1576458..1577432	-	324	82751190	holA	SAB1459c	-	DNA polymerase III subunit delta
1411	 33.12	0	1579697..1580158	-	153	82751191	-	SAB1461c	-	late competence deaminase protein
1412	 28.91	-1	1580250..1580927	-	225	82751192	-	SAB1462c	-	competence-related membrane protein
1413	 29.71	-1	1580976..1581692	-	238	82751193	-	SAB1463c	-	hypothetical protein
1414	 33.33	0	1581695..1582048	-	117	82751194	-	SAB1464c	-	hypothetical protein
1415	 31.45	0	1582049..1582633	-	194	82751195	-	SAB1465c	-	hypothetical protein
1416	 33.68	0	1582623..1583192	-	189	82751196	-	SAB1466c	-	nicotinate-nucleotide adenylyltransferase
1417	 29.21	-1	1583195..1583485	-	96	82751197	-	SAB1467c	-	hypothetical protein
1418	 31.10	0	1583489..1584295	-	268	82751198	aroE	SAB1468c	-	shikimate 5-dehydrogenase
1419	 33.79	0	1584309..1585409	-	366	82751199	-	SAB1469c	-	GTP-binding protein YqeH
1420	 32.95	0	1585410..1585937	-	175	82751200	-	SAB1470c	-	hypothetical protein
1421	 32.90	0	1585957..1586643	-	228	82751201	-	SAB1471c	-	hypothetical protein
1422	 26.67	-1	1586955..1587224	+	89	82751202	-	SAB1472	-	hypothetical protein
1423	 26.70	-1	1588596..1589816	-	406	82751203	-	SAB1474c	-	hypothetical protein
1424	 33.33	0	1590107..1591336	-	409	82751204	-	SAB1475c	-	hypothetical protein
1425	 35.06	0	1591348..1592100	-	250	82751205	-	SAB1476c	-	hypothetical protein
1426	 35.76	0	1592100..1593461	-	453	82751206	accC	SAB1477c	-	acetyl-CoA biotin carboxylase
1427	 31.33	0	1593475..1593924	-	149	82751207	accB	SAB1478c	-	biotin carboxyl carrier protein of acetyl-CoA carboxylase
1428	 34.72	0	1593926..1594936	-	336	82751208	-	SAB1479c	-	hypothetical protein
1429	 33.20	0	1594926..1595684	-	252	82751209	-	SAB1480c	-	hypothetical protein
1430	 33.33	0	1595986..1596462	-	158	82751210	greA	SAB1481c	-	transcription elongation factor
1431	 33.33	0	1596490..1597113	-	207	82751211	udk	SAB1482c	-	uridine kinase
1432	 35.46	0	1597113..1598381	-	422	82751212	-	SAB1483c	-	proteinase
1433	 34.30	0	1598393..1599322	-	309	82751213	-	SAB1484c	-	proteinase
1434	 28.95	-1	1599319..1599957	-	212	82751214	-	SAB1485c	-	hypothetical protein
1435	 32.36	0	1600242..1600550	-	102	82751215	-	SAB1486c	-	hypothetical protein
1436	 32.63	0	1600565..1600993	-	142	82751216	-	SAB1487c	-	hypothetical protein
1437	 30.27	0	1600997..1601257	-	86	82751217	-	SAB1488c	-	hypothetical protein
1438	 35.23	0	1601320..1603950	-	876	82751218	alaS	SAB1489c	-	alanyl-tRNA synthetase
1439	 32.81	0	1604293..1606770	-	825	82751219	-	SAB1490c	-	deoxyribonuclease
1440	 31.09	0	1606772..1607440	-	222	82751220	-	SAB1491c	-	hypothetical protein
1441	 34.67	0	1607906..1609024	-	372	82751221	trmU	SAB1492c	-	5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA
1442	 34.65	0	1609025..1610167	-	380	82751222	-	SAB1493c	-	iron-sulfur cofactor synthesis protein
1443	 36.19	0	1610479..1611492	+	337	82751223	-	SAB1494	-	oxygenase
1444	 25.93	-2	1611680..1611895	+	71	82751224	-	SAB1495	-	hypothetical protein
1445	 34.28	0	1612157..1612579	-	140	82751225	-	SAB1496c	-	hypothetical protein
1446	 35.76	0	1612664..1613938	+	424	82751226	-	SAB1497	-	recombination factor protein RarA
1447	 32.69	0	1614099..1614872	-	257	82751227	-	SAB1498c	-	hypothetical protein
1448	 35.77	0	1615333..1617099	-	588	82751228	aspS	SAB1499c	-	aspartyl-tRNA synthetase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.