IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1289	 27.92	-1	1462490..1463062	-	190	82751069	-	SAB1334c	-	hypothetical protein
1290	 36.63	+1	1463493..1463765	-	90	82751070	hup	SAB1335c	-	DNA-binding protein II
1291	 34.13	0	1463936..1464934	-	332	82751071	gpsA	SAB1336c	-	glycerol-3-phosphate dehydrogenase
1292	 34.01	0	1466484..1467659	-	391	82751072	rpsA	SAB1338c	-	30S ribosomal protein S1
1293	 27.08	-1	1467916..1468107	-	63	82751073	-	SAB1339c	-	hypothetical protein
1294	 34.55	0	1468371..1469030	-	219	82751074	cmk	SAB1340c	-	cytidylate kinase
1295	 34.67	0	1469107..1470075	+	322	82751075	-	SAB1341	-	L-asparaginase
1296	 33.42	0	1470190..1471317	-	375	82751076	-	SAB1342c	-	hypothetical protein
1297	 36.71	+1	1471561..1473012	-	483	82751077	ebpS	SAB1343c	-	cell surface elastin binding protein
1298	 34.28	0	1473165..1474544	-	459	82751078	-	SAB1344c	-	ATP-dependent DNA helicase
1299	 28.41	-1	1474534..1475487	-	317	82751079	-	SAB1345c	-	hypothetical protein
1300	 38.55	+1	1475595..1475843	+	82	82751080	-	SAB1346	-	ferredoxin
1301	 31.87	0	1475949..1476494	-	181	82751081	-	SAB1347c	-	hypothetical protein
1302	 29.29	-1	1477101..1478015	-	304	82751082	-	SAB1348c	-	lipoprotein
1303	 28.00	-1	1478106..1478930	-	274	82751083	-	SAB1349c	-	lipoprotein
1304	 28.97	-1	1479068..1480282	-	404	82751084	-	SAB1350c	-	hypothetical protein
1305	 31.39	0	1480269..1481141	-	290	82751085	-	SAB1351c	-	hypothetical protein
1306	 32.71	0	1481447..1483198	-	583	82751086	srrB	SAB1352c	-	staphylococcal respiratory response protein B
1307	 34.28	0	1484037..1484774	-	245	82751087	rluB	SAB1354c	-	ribosomal large subunit pseudouridine synthase B
1308	 30.42	0	1485302..1486057	-	251	82751088	-	SAB1356c	-	hypothetical protein
1309	 32.15	0	1486125..1486631	+	168	82751089	-	SAB1357	-	hypothetical protein
1310	 33.78	0	1486709..1487596	-	295	82751090	xerD	SAB1358c	-	site-specific recombinase
1311	 36.44	+1	1487645..1488094	-	149	82751091	fur	SAB1359c	-	iron transcriptional regulator
1312	 31.86	0	1488199..1488741	-	180	82751092	-	SAB1360c	-	ADP-ribose pyrophosphatase
1313	 32.01	0	1488823..1489731	+	302	82751093	-	SAB1361	-	oxidoreductase
1314	 32.13	0	1489947..1490195	-	82	82751094	-	SAB1362c	-	hypothetical protein
1315	 33.60	0	1490211..1490966	-	251	82751095	-	SAB1363c	-	oxidoreductase
1316	 33.58	0	1491108..1491923	+	271	82751096	-	SAB1364	-	pyrrolidine-5-carboxylate reductase
1317	 33.33	0	1492028..1492948	-	306	82751097	-	SAB1365c	-	metallo-beta-lactamase
1318	 33.27	0	1493261..1494745	+	494	82751098	-	SAB1366	-	glucose-6-phosphate 1-dehydrogenase
1319	 33.68	0	1494975..1495841	+	288	82751099	-	SAB1367	-	AraC family transcriptional regulator
1320	 34.61	0	1495924..1497573	-	549	82751100	malA	SAB1368c	-	alpha-D-1,4-glucosidase
1321	 31.96	0	1497589..1498608	-	339	82751101	malR	SAB1369c	-	maltose operon transcriptional repressor
1322	 29.52	-1	1498609..1498818	-	69	82751102	-	SAB1370c	-	hypothetical protein
1323	 33.33	0	1498802..1499173	-	123	82751103	-	SAB1371c	-	hypothetical protein
1324	 25.29	-2	1499295..1499903	-	202	82751104	-	SAB1372c	-	protease
1325	 28.81	-1	1499878..1501203	-	441	82751105	-	SAB1373c	-	streptolysin-associated protein SagD-like protein
1326	 25.18	-2	1501190..1501753	-	187	82751106	-	SAB1374c	-	hypothetical protein
1327	 24.43	-2	1501772..1502119	-	115	82751107	-	SAB1375c	-	hypothetical protein
1328	 28.16	-1	1502127..1502435	-	102	82751108	-	SAB1376c	-	streptolysin S-associated protein SagB-like protein
1329	 26.90	-1	1502495..1503007	-	170	82751109	-	SAB1377c	-	hypothetical protein
1330	 33.33	0	1503162..1503299	-	45	82751110	-	SAB1378c	-	hypothetical protein
1331	 25.17	-2	1503308..1504042	-	244	82751111	-	SAB1379c	-	ABC transporter permease
1332	 24.53	-2	1504039..1504890	-	283	82751112	-	SAB1380c	-	ABC transporter
1333	 35.29	0	1504962..1505114	-	50	82751113	-	SAB1381c	-	hypothetical protein
1334	 25.19	-2	1505329..1505463	+	44	82751114	-	SAB1382	-	hypothetical protein
1335	 42.95	+2	1505491..1505646	+	51	82751115	-	SAB1383	-	hypothetical protein
1336	 34.40	0	1505744..1507150	-	468	82751116	gnd	SAB1384c	-	6-phosphogluconate dehydrogenase
1337	 35.90	0	1507218..1508465	-	415	82751117	-	SAB1385c	-	peptidase T
1338	 29.77	0	1508920..1509900	-	326	82751118	-	SAB1386c	-	hypothetical protein
1339	 36.53	+1	1509914..1510351	-	145	82751119	-	SAB1387c	-	hypothetical protein
1340	 32.86	0	1510701..1511975	-	424	82751120	-	SAB1388c	-	branched-chain alpha-keto acid dehydrogenase E2
1341	 34.96	0	1511988..1512971	-	327	82751121	-	SAB1389c	-	2-oxoisovalerate dehydrogenase beta subunit
1342	 37.97	+1	1512971..1513963	-	330	82751122	-	SAB1390c	-	2-oxoisovalerate dehydrogenase alpha subunit
1343	 34.95	0	1513979..1515400	-	473	82751123	-	SAB1391c	-	dihydrolipoamide dehydrogenase
1344	 30.89	0	1515551..1517230	-	559	82751124	-	SAB1392c	-	DNA repair protein
1345	 30.02	0	1517246..1517698	-	150	82751125	argR	SAB1393c	-	arginine repressor
1346	 33.90	0	1518129..1519010	-	293	82751126	-	SAB1394c	-	geranyltranstransferase
1347	 30.74	0	1518988..1519218	-	76	82751127	-	SAB1395c	-	exodeoxyribonuclease VII small subunit
1348	 31.39	0	1519211..1520548	-	445	82751128	xseA	SAB1396c	-	exodeoxyribonuclease VII large subunit
1349	 30.26	0	1520565..1520954	-	129	82751129	nusB	SAB1397c	-	transcription antitermination protein NusB
1350	 29.20	-1	1521014..1521376	-	120	82751130	-	SAB1398c	-	hypothetical protein
1351	 36.58	+1	1521391..1522746	-	451	82751131	accC	SAB1399c	-	acetyl-CoA carboxylase biotin carboxylase subunit
1352	 35.70	0	1522746..1523210	-	154	82751132	accB	SAB1400c	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1353	 32.97	0	1523684..1524241	-	185	82751133	efp	SAB1401c	-	elongation factor P
1354	 32.39	0	1524267..1525328	-	353	82751134	-	SAB1402c	-	proline dipeptidase
1355	 27.84	-1	1525433..1526014	+	193	82751135	-	SAB1403	-	hypothetical protein
1356	 28.77	-1	1526028..1526246	+	72	82751136	-	SAB1404	-	hypothetical protein
1357	 34.78	0	1526310..1527140	-	276	82751137	-	SAB1405c	-	lipoate-protein ligase A
1358	 33.85	0	1527298..1527684	+	128	82751138	-	SAB1406	-	hypothetical protein
1359	 34.62	0	1528048..1529520	-	490	82751139	-	SAB1407c	-	glycine dehydrogenase subunit 2
1360	 34.59	0	1529513..1530868	-	451	82751140	-	SAB1408c	-	glycine dehydrogenase subunit 1
1361	 31.59	0	1530879..1531970	-	363	82751141	gcvT	SAB1409c	-	glycine cleavage system aminomethyltransferase T
1362	 28.38	-1	1532129..1532653	-	174	82751142	-	SAB1410c	-	hypothetical protein
1363	 26.92	-1	1532886..1533353	-	155	82751143	-	SAB1411c	-	hypothetical protein
1364	 30.00	0	1533301..1533600	-	99	82751144	-	SAB1412c	-	hypothetical protein
1365	 26.17	-2	1533587..1534033	-	148	82751145	-	SAB1413c	-	hypothetical protein
1366	 29.17	-1	1534011..1534322	-	103	82751146	-	SAB1414c	-	exogenous DNA-binding protein
1367	 31.08	0	1535378..1536352	-	324	82751147	-	SAB1416c	-	late competence protein
1368	 32.53	0	1536404..1537027	-	207	82751148	-	SAB1417c	-	metallo-beta-lactamase superfamily protein
1369	 31.21	0	1537024..1537353	-	109	82751149	-	SAB1418c	-	hypothetical protein
1370	 34.65	0	1537353..1538339	-	328	82751150	glkA	SAB1419c	-	glucokinase
1371	 26.47	-1	1538336..1538539	-	67	82751151	-	SAB1420c	-	hypothetical protein
1372	 27.53	-1	1538520..1539983	-	487	82751152	-	SAB1421c	-	hypothetical protein
1373	 29.81	0	1539995..1540534	-	179	82751153	-	SAB1422c	-	hypothetical protein
1374	 34.00	0	1540743..1540892	-	49	82751154	rpmG	SAB1423c	-	50S ribosomal protein L33
1375	 33.33	0	1541005..1543080	-	691	82751155	pbpF	SAB1424c	-	penicillin-binding protein 3
1376	 34.83	0	1543201..1543800	-	199	82751156	sodA	SAB1425c	-	superoxide dismutase
1377	 28.47	-1	1544076..1544486	-	136	82751157	zur	SAB1426c	-	zinc-specific metalloregulator
1378	 32.07	0	1544473..1545345	-	290	82751158	mreB	SAB1427c	-	ABC transporter protein
1379	 30.03	0	1545378..1546163	-	261	82751159	mreA	SAB1428c	-	ABC transporter protein
1380	 33.56	0	1546289..1547179	-	296	82751160	-	SAB1429c	-	endonuclease IV
1381	 32.59	0	1547189..1548535	-	448	82751161	-	SAB1430c	-	ATP-dependent RNA helicase
1382	 30.97	0	1548649..1549749	-	366	82751162	-	SAB1431c	-	hypothetical protein
1383	 32.01	0	1549752..1550429	-	225	82751163	-	SAB1432c	-	hypothetical protein
1384	 33.88	0	1550560..1551666	-	368	82751164	rpoD	SAB1433c	-	RNA polymerase sigma factor RpoD
1385	 32.00	0	1551890..1553689	-	599	82751165	dnaG	SAB1434c	-	DNA primase
1386	 32.72	0	1553750..1554568	-	272	82751166	-	SAB1435c	-	hypothetical protein
1387	 30.37	0	1554579..1555118	-	179	82751167	-	SAB1436c	-	hypothetical protein
1388	 34.41	0	1555537..1556928	+	463	82751168	glyS	SAB1437	-	glycyl-tRNA synthetase
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.