IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1254	 34.07	0	1421380..1422054	+	224	82751034	-	SAB1299	-	transposase for IS-like element
1255	 33.65	0	1422064..1423005	-	313	82751035	-	SAB1300c	-	truncated cell surface fibronectin-binding protein
1256	 32.41	0	1423403..1424923	-	506	82751036	-	SAB1301c	-	transmembrane efflux protein
1257	 35.13	0	1425156..1426271	-	371	82751037	-	SAB1302c	-	amino acid permease protein
1258	 34.66	0	1426440..1427342	-	300	82751038	tdcB	SAB1303c	-	threonine dehydratase
1259	 35.48	0	1427437..1428555	-	372	82751039	ald	SAB1304c	-	alanine dehydrogenase
1260	 32.42	0	1429029..1429907	-	292	82751040	-	SAB1305c	-	5'-3' exonuclease
1261	 30.72	0	1429927..1433367	-	1146	82751041	-	SAB1306c	-	hypothetical protein
1262	 32.81	0	1433671..1435011	+	446	82751042	-	SAB1307	-	hypothetical protein
1263	 28.83	-1	1435170..1435502	-	110	82751043	-	SAB1308c	-	hypothetical protein
1264	 35.86	0	1435586..1436731	-	381	82751044	-	SAB1309c	-	hypothetical protein
1265	 27.54	-1	1437383..1437727	-	114	82751045	-	SAB1310c	-	hypothetical protein
1266	 31.56	0	1437741..1438304	-	187	82751046	-	SAB1311c	-	hypothetical protein
1267	 29.06	-1	1438297..1438647	-	116	82751047	-	SAB1312c	-	hypothetical protein
1268	 32.06	0	1439187..1439813	+	208	82751048	recU	SAB1313	-	Holliday junction-specific endonuclease
1269	 35.21	0	1439810..1441993	+	727	82751049	pbp2	SAB1314	-	penicillin-binding protein 2
1270	 27.78	-1	1442501..1442842	-	113	82751050	-	SAB1315c	-	hypothetical protein
1271	 34.70	0	1442847..1443506	-	219	82751051	-	SAB1316c	-	endonuclease III-like protein
1272	 30.28	0	1443496..1444182	-	228	82751052	-	SAB1317c	-	DNA replication initiation protein
1273	 35.42	0	1444510..1445802	-	430	82751053	asnC	SAB1318c	-	asparaginyl-tRNA synthetase
1274	 30.10	0	1446123..1448816	-	897	82751054	dinG	SAB1319c	-	ATP-dependent DNA helicase
1275	 30.45	0	1448840..1449811	-	323	82751055	birA	SAB1320c	-	bifunctional biotin operon-related protein and biotin-acetyl-CoA-carboxylase
1276	 31.75	0	1449798..1451000	-	400	82751056	papS	SAB1321c	-	tRNA CCA-pyrophosphorylase
1277	 32.81	0	1451005..1452147	-	380	82751057	-	SAB1322c	-	glycosyltransferase
1278	 31.76	0	1452405..1452722	-	105	82751058	-	SAB1323c	-	hypothetical protein
1279	 36.77	+1	1453058..1453756	-	232	82751059	-	SAB1324c	-	hypothetical protein
1280	 29.39	-1	1453810..1454316	-	168	82751060	-	SAB1325c	-	hypothetical protein
1281	 30.57	0	1454387..1454965	-	192	82751061	-	SAB1326c	-	hypothetical protein
1282	 30.84	0	1454976..1456220	-	414	82751062	-	SAB1327c	-	hypothetical protein
1283	 36.49	+1	1456227..1457525	-	432	82751063	aroA	SAB1328c	-	3-phosphoshikimate 1-carboxyvinyltransferase
1284	 32.49	0	1457535..1458599	-	354	82751064	aroB	SAB1329c	-	3-dehydroquinate synthase
1285	 36.68	+1	1458625..1459791	-	388	82751065	aroC	SAB1330c	-	chorismate synthase
1286	 34.22	0	1460260..1460709	-	149	82751066	-	SAB1331c	-	nucleoside-diphosphate kinase
1287	 35.00	0	1460801..1461760	-	319	82751067	-	SAB1332c	-	heptaprenyl diphosphate syntase component II
1288	 34.30	0	1461762..1462487	-	241	82751068	ubiE	SAB1333c	-	ubiquinone/menaquinone biosynthesis methyltransferase
1289	 27.92	-1	1462490..1463062	-	190	82751069	-	SAB1334c	-	hypothetical protein
1290	 36.63	+1	1463493..1463765	-	90	82751070	hup	SAB1335c	-	DNA-binding protein II
1291	 34.13	0	1463936..1464934	-	332	82751071	gpsA	SAB1336c	-	glycerol-3-phosphate dehydrogenase
1292	 34.01	0	1466484..1467659	-	391	82751072	rpsA	SAB1338c	-	30S ribosomal protein S1
1293	 27.08	-1	1467916..1468107	-	63	82751073	-	SAB1339c	-	hypothetical protein
1294	 34.55	0	1468371..1469030	-	219	82751074	cmk	SAB1340c	-	cytidylate kinase
1295	 34.67	0	1469107..1470075	+	322	82751075	-	SAB1341	-	L-asparaginase
1296	 33.42	0	1470190..1471317	-	375	82751076	-	SAB1342c	-	hypothetical protein
1297	 36.71	+1	1471561..1473012	-	483	82751077	ebpS	SAB1343c	-	cell surface elastin binding protein
1298	 34.28	0	1473165..1474544	-	459	82751078	-	SAB1344c	-	ATP-dependent DNA helicase
1299	 28.41	-1	1474534..1475487	-	317	82751079	-	SAB1345c	-	hypothetical protein
1300	 38.55	+1	1475595..1475843	+	82	82751080	-	SAB1346	-	ferredoxin
1301	 31.87	0	1475949..1476494	-	181	82751081	-	SAB1347c	-	hypothetical protein
1302	 29.29	-1	1477101..1478015	-	304	82751082	-	SAB1348c	-	lipoprotein
1303	 28.00	-1	1478106..1478930	-	274	82751083	-	SAB1349c	-	lipoprotein
1304	 28.97	-1	1479068..1480282	-	404	82751084	-	SAB1350c	-	hypothetical protein
1305	 31.39	0	1480269..1481141	-	290	82751085	-	SAB1351c	-	hypothetical protein
1306	 32.71	0	1481447..1483198	-	583	82751086	srrB	SAB1352c	-	staphylococcal respiratory response protein B
1307	 34.28	0	1484037..1484774	-	245	82751087	rluB	SAB1354c	-	ribosomal large subunit pseudouridine synthase B
1308	 30.42	0	1485302..1486057	-	251	82751088	-	SAB1356c	-	hypothetical protein
1309	 32.15	0	1486125..1486631	+	168	82751089	-	SAB1357	-	hypothetical protein
1310	 33.78	0	1486709..1487596	-	295	82751090	xerD	SAB1358c	-	site-specific recombinase
1311	 36.44	+1	1487645..1488094	-	149	82751091	fur	SAB1359c	-	iron transcriptional regulator
1312	 31.86	0	1488199..1488741	-	180	82751092	-	SAB1360c	-	ADP-ribose pyrophosphatase
1313	 32.01	0	1488823..1489731	+	302	82751093	-	SAB1361	-	oxidoreductase
1314	 32.13	0	1489947..1490195	-	82	82751094	-	SAB1362c	-	hypothetical protein
1315	 33.60	0	1490211..1490966	-	251	82751095	-	SAB1363c	-	oxidoreductase
1316	 33.58	0	1491108..1491923	+	271	82751096	-	SAB1364	-	pyrrolidine-5-carboxylate reductase
1317	 33.33	0	1492028..1492948	-	306	82751097	-	SAB1365c	-	metallo-beta-lactamase
1318	 33.27	0	1493261..1494745	+	494	82751098	-	SAB1366	-	glucose-6-phosphate 1-dehydrogenase
1319	 33.68	0	1494975..1495841	+	288	82751099	-	SAB1367	-	AraC family transcriptional regulator
1320	 34.61	0	1495924..1497573	-	549	82751100	malA	SAB1368c	-	alpha-D-1,4-glucosidase
1321	 31.96	0	1497589..1498608	-	339	82751101	malR	SAB1369c	-	maltose operon transcriptional repressor
1322	 29.52	-1	1498609..1498818	-	69	82751102	-	SAB1370c	-	hypothetical protein
1323	 33.33	0	1498802..1499173	-	123	82751103	-	SAB1371c	-	hypothetical protein
1324	 25.29	-2	1499295..1499903	-	202	82751104	-	SAB1372c	-	protease
1325	 28.81	-1	1499878..1501203	-	441	82751105	-	SAB1373c	-	streptolysin-associated protein SagD-like protein
1326	 25.18	-2	1501190..1501753	-	187	82751106	-	SAB1374c	-	hypothetical protein
1327	 24.43	-2	1501772..1502119	-	115	82751107	-	SAB1375c	-	hypothetical protein
1328	 28.16	-1	1502127..1502435	-	102	82751108	-	SAB1376c	-	streptolysin S-associated protein SagB-like protein
1329	 26.90	-1	1502495..1503007	-	170	82751109	-	SAB1377c	-	hypothetical protein
1330	 33.33	0	1503162..1503299	-	45	82751110	-	SAB1378c	-	hypothetical protein
1331	 25.17	-2	1503308..1504042	-	244	82751111	-	SAB1379c	-	ABC transporter permease
1332	 24.53	-2	1504039..1504890	-	283	82751112	-	SAB1380c	-	ABC transporter
1333	 35.29	0	1504962..1505114	-	50	82751113	-	SAB1381c	-	hypothetical protein
1334	 25.19	-2	1505329..1505463	+	44	82751114	-	SAB1382	-	hypothetical protein
1335	 42.95	+2	1505491..1505646	+	51	82751115	-	SAB1383	-	hypothetical protein
1336	 34.40	0	1505744..1507150	-	468	82751116	gnd	SAB1384c	-	6-phosphogluconate dehydrogenase
1337	 35.90	0	1507218..1508465	-	415	82751117	-	SAB1385c	-	peptidase T
1338	 29.77	0	1508920..1509900	-	326	82751118	-	SAB1386c	-	hypothetical protein
1339	 36.53	+1	1509914..1510351	-	145	82751119	-	SAB1387c	-	hypothetical protein
1340	 32.86	0	1510701..1511975	-	424	82751120	-	SAB1388c	-	branched-chain alpha-keto acid dehydrogenase E2
1341	 34.96	0	1511988..1512971	-	327	82751121	-	SAB1389c	-	2-oxoisovalerate dehydrogenase beta subunit
1342	 37.97	+1	1512971..1513963	-	330	82751122	-	SAB1390c	-	2-oxoisovalerate dehydrogenase alpha subunit
1343	 34.95	0	1513979..1515400	-	473	82751123	-	SAB1391c	-	dihydrolipoamide dehydrogenase
1344	 30.89	0	1515551..1517230	-	559	82751124	-	SAB1392c	-	DNA repair protein
1345	 30.02	0	1517246..1517698	-	150	82751125	argR	SAB1393c	-	arginine repressor
1346	 33.90	0	1518129..1519010	-	293	82751126	-	SAB1394c	-	geranyltranstransferase
1347	 30.74	0	1518988..1519218	-	76	82751127	-	SAB1395c	-	exodeoxyribonuclease VII small subunit
1348	 31.39	0	1519211..1520548	-	445	82751128	xseA	SAB1396c	-	exodeoxyribonuclease VII large subunit
1349	 30.26	0	1520565..1520954	-	129	82751129	nusB	SAB1397c	-	transcription antitermination protein NusB
1350	 29.20	-1	1521014..1521376	-	120	82751130	-	SAB1398c	-	hypothetical protein
1351	 36.58	+1	1521391..1522746	-	451	82751131	accC	SAB1399c	-	acetyl-CoA carboxylase biotin carboxylase subunit
1352	 35.70	0	1522746..1523210	-	154	82751132	accB	SAB1400c	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1353	 32.97	0	1523684..1524241	-	185	82751133	efp	SAB1401c	-	elongation factor P
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.