IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 33.03 STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1181	 31.29	0	1341176..1341958	+	260	82750961	trpC	SAB1225	-	indole-3-glycerol-phosphate synthase
1182	 32.07	0	1341958..1342590	+	210	82750962	trpF	SAB1226	-	N-5'-phosphoribosyl-anthranilate isomerase
1183	 38.02	+1	1342583..1343797	+	404	82750963	trpB	SAB1227	-	tryptophan synthase subunit beta
1184	 33.88	0	1343790..1344518	+	242	82750964	trpA	SAB1228	-	tryptophan synthase subunit alpha
1185	 31.34	0	1344801..1346102	+	433	82750965	femA	SAB1229	-	factor essential for expression of methicillin resistance
1186	 31.43	0	1346121..1347380	+	419	82750966	femB	SAB1230	-	methicillin resistance factor protein
1187	 23.56	-2	1347667..1348413	+	248	82750967	-	SAB1231	-	hypothetical protein
1188	 34.63	0	1348653..1349039	+	128	82750968	-	SAB1232	-	hypothetical protein
1189	 33.12	0	1349241..1349714	-	157	82750969	-	SAB1233c	-	hypothetical protein
1190	 32.91	0	1349838..1350539	-	233	82750970	-	SAB1234c	-	oligopeptide transporter ATPase
1191	 31.65	0	1350532..1351305	-	257	82750971	-	SAB1235c	-	oligopeptide transporter ATPase
1192	 32.73	0	1351292..1352122	-	276	82750972	-	SAB1236c	-	oligopeptide membrane permease
1193	 30.90	0	1352115..1353101	-	328	82750973	-	SAB1237c	-	oligopeptide membrane permease
1194	 26.29	-2	1353231..1353443	-	70	82750974	-	SAB1238c	-	hypothetical protein
1195	 27.25	-1	1353406..1353750	-	114	82750975	-	SAB1239c	-	hypothetical protein
1196	 33.44	0	1353955..1355769	+	604	82750976	-	SAB1240	-	oligoendopeptidase F
1197	 31.62	0	1355911..1356552	-	213	82750977	-	SAB1241c	-	phosphate transporter PhoU
1198	 33.10	0	1356559..1357410	-	283	82750978	-	SAB1242c	-	phosphate import ATP-binding protein
1199	 35.51	0	1357457..1358374	-	305	82750979	-	SAB1243c	-	phosphate ABC transporter permease
1200	 35.49	0	1358376..1359302	-	308	82750980	-	SAB1244c	-	phosphate ABC transporter permease
1201	 31.91	0	1359493..1360476	-	327	82750981	-	SAB1245c	-	phosphate-binding lipoprotein
1202	 34.99	0	1360848..1361750	-	300	82750982	-	SAB1246c	-	hypothetical protein
1203	 33.21	0	1361896..1363497	+	533	82750983	-	SAB1247	-	ATP-binding ABC transporter protein
1204	 34.08	0	1364269..1365474	+	401	82750984	lysC	SAB1248	-	aspartate kinase
1205	 35.56	0	1365538..1366527	+	329	82750985	asd	SAB1249	-	aspartate semialdehyde dehydrogenase
1206	 34.91	0	1366529..1367416	+	295	82750986	dapA	SAB1250	-	dihydrodipicolinate synthase
1207	 37.07	+1	1367413..1368135	+	240	82750987	dapB	SAB1251	-	dihydrodipicolinate reductase
1208	 37.64	+1	1368162..1368881	+	239	82750988	dapD	SAB1252	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1209	 34.29	0	1369024..1370175	+	383	82750989	-	SAB1253	-	peptidase
1210	 33.98	0	1370180..1371265	+	361	82750990	alr	SAB1254	-	alanine racemase
1211	 33.73	0	1371255..1372520	+	421	82750991	lysA	SAB1255	-	diaminopimelate decarboxylase
1212	 31.39	0	1372614..1373231	-	205	82750992	-	SAB1256c	-	transcriptional regulator
1213	 21.39	-2	1373365..1373766	-	133	82750993	-	SAB1257c	-	hypothetical protein
1214	 37.81	+1	1373964..1374164	-	66	82750994	cspA	SAB1258c	-	cold shock protein
1215	 27.83	-1	1374335..1374643	-	102	82750995	-	SAB1259c	-	hypothetical protein
1216	 35.93	0	1374802..1375071	+	89	82750996	-	SAB1260	-	hypothetical protein
1217	 29.84	0	1375090..1375719	+	209	82750997	-	SAB1261	-	hypothetical protein
1218	 32.98	0	1375751..1376887	+	378	82750998	-	SAB1262	-	toxic ion resistance protein
1219	 32.14	0	1376961..1378304	-	447	82750999	-	SAB1263c	-	branched-chain amino acid carrier II protein
1220	 31.64	0	1378529..1380415	-	628	82751000	-	SAB1264c	-	hypothetical protein
1221	 32.45	0	1380429..1381220	-	263	82751001	-	SAB1265c	-	nitric oxide reductase protein
1222	 28.43	-1	1381401..1381604	-	67	82751002	-	SAB1266c	-	hypothetical protein
1223	 34.57	0	1381632..1382441	-	269	82751003	-	SAB1267c	-	hypothetical protein
1224	 34.52	0	1383021..1384289	-	422	82751004	odhB	SAB1268c	-	dihydrolipoamide acetyltransferase
1225	 35.55	0	1384303..1387101	-	932	82751005	kgd	SAB1269c	-	alpha-ketoglutarate decarboxylase
1226	 29.35	-1	1387390..1388745	-	451	82751006	arlS	SAB1270c	-	two-component sensor histidine kinase
1227	 32.58	0	1388742..1389401	-	219	82751007	arlR	SAB1271c	-	two-component response regulator
1228	 32.03	0	1390486..1391100	-	204	82751008	-	SAB1272c	-	hypothetical protein
1229	 29.79	0	1391117..1392187	-	356	82751009	murG	SAB1273c	-	N-acetylglucosaminyl transferase
1230	 33.53	0	1392199..1392708	-	169	82751010	-	SAB1274c	-	hypothetical protein
1231	 30.92	0	1393108..1394598	-	496	82751011	-	SAB1275c	-	carboxy-terminal processing proteinase
1232	 34.23	0	1394780..1395001	-	73	82751012	-	SAB1276c	-	hypothetical protein
1233	 34.13	0	1395001..1395501	-	166	82751013	-	SAB1277c	-	phosphotransferase system glucose-specific IIA component
1234	 31.93	0	1395513..1395941	-	142	82751014	-	SAB1278c	-	methionine sulfoxide reductase B
1235	 35.77	0	1395934..1396467	-	177	82751015	msrA	SAB1279c	-	methionine sulfoxide reductase A
1236	 31.31	0	1396553..1397392	-	279	82751016	-	SAB1280c	-	hypothetical protein
1237	 34.17	0	1397407..1397886	-	159	82751017	dfrB	SAB1281c	-	dihydrofolate reductase
1238	 33.65	0	1398086..1399042	-	318	82751018	thyA	SAB1282c	-	thymidylate synthase
1239	 36.99	+1	1399466..1399903	-	145	82751019	-	SAB1283c	-	hypothetical protein
1240	 35.20	0	1399919..1401043	-	374	82751020	-	SAB1284c	-	hypothetical protein
1241	 32.94	0	1401081..1401332	-	83	82751021	-	SAB1285c	-	hypothetical protein
1242	 33.85	0	1401344..1401538	-	64	82751022	-	SAB1286c	-	hypothetical protein
1243	 31.06	0	1401783..1402487	+	234	82751023	-	SAB1287	-	hypothetical protein
1244	 33.58	0	1402728..1403129	+	133	82751024	-	SAB1288	-	cell wall enzyme
1245	 34.12	0	1403175..1408925	-	1916	82751025	-	SAB1289c	-	truncated cell surface fibronectin-binding protein
1246	 36.39	+1	1408971..1410803	-	610	82751026	-	SAB1290c	-	truncated cell surface fibronectin-binding protein
1247	 36.56	+1	1410800..1415167	-	1455	82751027	-	SAB1291c	-	truncated cell surface fibronectin-binding protein
1248	 34.42	0	1415268..1416185	-	305	82751028	-	SAB1292c	-	truncated cell surface fibronectin-binding protein
1249	 33.08	0	1416357..1416749	-	130	82751029	-	SAB1293c	-	truncated cell surface fibronectin-binding protein
1250	 28.89	-1	1417124..1417303	+	59	82751030	-	SAB1295	-	hypothetical protein
1251	 32.10	0	1418565..1419536	-	323	82751031	-	SAB1296c	-	alcohol dehydrogenase
1252	 26.90	-1	1419659..1420078	+	139	82751032	-	SAB1297	-	hypothetical protein
1253	 32.35	0	1420349..1420960	+	203	82751033	-	SAB1298	-	recombinase
1254	 34.07	0	1421380..1422054	+	224	82751034	-	SAB1299	-	transposase for IS-like element
1255	 33.65	0	1422064..1423005	-	313	82751035	-	SAB1300c	-	truncated cell surface fibronectin-binding protein
1256	 32.41	0	1423403..1424923	-	506	82751036	-	SAB1301c	-	transmembrane efflux protein
1257	 35.13	0	1425156..1426271	-	371	82751037	-	SAB1302c	-	amino acid permease protein
1258	 34.66	0	1426440..1427342	-	300	82751038	tdcB	SAB1303c	-	threonine dehydratase
1259	 35.48	0	1427437..1428555	-	372	82751039	ald	SAB1304c	-	alanine dehydrogenase
1260	 32.42	0	1429029..1429907	-	292	82751040	-	SAB1305c	-	5'-3' exonuclease
1261	 30.72	0	1429927..1433367	-	1146	82751041	-	SAB1306c	-	hypothetical protein
1262	 32.81	0	1433671..1435011	+	446	82751042	-	SAB1307	-	hypothetical protein
1263	 28.83	-1	1435170..1435502	-	110	82751043	-	SAB1308c	-	hypothetical protein
1264	 35.86	0	1435586..1436731	-	381	82751044	-	SAB1309c	-	hypothetical protein
1265	 27.54	-1	1437383..1437727	-	114	82751045	-	SAB1310c	-	hypothetical protein
1266	 31.56	0	1437741..1438304	-	187	82751046	-	SAB1311c	-	hypothetical protein
1267	 29.06	-1	1438297..1438647	-	116	82751047	-	SAB1312c	-	hypothetical protein
1268	 32.06	0	1439187..1439813	+	208	82751048	recU	SAB1313	-	Holliday junction-specific endonuclease
1269	 35.21	0	1439810..1441993	+	727	82751049	pbp2	SAB1314	-	penicillin-binding protein 2
1270	 27.78	-1	1442501..1442842	-	113	82751050	-	SAB1315c	-	hypothetical protein
1271	 34.70	0	1442847..1443506	-	219	82751051	-	SAB1316c	-	endonuclease III-like protein
1272	 30.28	0	1443496..1444182	-	228	82751052	-	SAB1317c	-	DNA replication initiation protein
1273	 35.42	0	1444510..1445802	-	430	82751053	asnC	SAB1318c	-	asparaginyl-tRNA synthetase
1274	 30.10	0	1446123..1448816	-	897	82751054	dinG	SAB1319c	-	ATP-dependent DNA helicase
1275	 30.45	0	1448840..1449811	-	323	82751055	birA	SAB1320c	-	bifunctional biotin operon-related protein and biotin-acetyl-CoA-carboxylase
1276	 31.75	0	1449798..1451000	-	400	82751056	papS	SAB1321c	-	tRNA CCA-pyrophosphorylase
1277	 32.81	0	1451005..1452147	-	380	82751057	-	SAB1322c	-	glycosyltransferase
1278	 31.76	0	1452405..1452722	-	105	82751058	-	SAB1323c	-	hypothetical protein
1279	 36.77	+1	1453058..1453756	-	232	82751059	-	SAB1324c	-	hypothetical protein
1280	 29.39	-1	1453810..1454316	-	168	82751060	-	SAB1325c	-	hypothetical protein
33.03	MEAN

3.30	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.