IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1127	 35.35	0	1272081..1273319	+	412	82750907	-	SAB1170	-	hypothetical protein
1128	 32.52	0	1273563..1273931	+	122	82750908	glnR	SAB1171	-	glutamine synthetase repressor
1129	 35.12	0	1273950..1275290	+	446	82750909	glnA	SAB1172	-	glutamine synthetase
1130	 26.87	-1	1278611..1278811	+	66	82750910	-	SAB1173	-	hypothetical protein
1131	 22.54	-2	1279323..1279739	+	138	82750911	-	SAB1174	-	hypothetical protein
1132	 33.33	0	1279804..1280025	-	73	82750912	-	SAB1175c	-	hypothetical protein
1133	 33.11	0	1280574..1281908	+	444	82750913	-	SAB1176	-	hypothetical protein
1134	 33.83	0	1282401..1282601	+	66	82750914	-	SAB1177	-	hypothetical protein
1135	 33.43	0	1283647..1284702	-	351	82750915	-	SAB1178c	-	hypothetical protein
1136	 23.23	-2	1284942..1285139	+	65	82750916	-	SAB1179	-	hypothetical protein
1137	 31.38	0	1285196..1286677	+	493	82750917	-	SAB1180	-	cardiolipin synthase
1138	 28.57	-1	1287063..1287251	-	62	82750918	-	SAB1181c	-	hypothetical protein
1139	 31.27	0	1287390..1287923	+	177	82750919	nucI	SAB1182	-	thermonuclease
1140	 29.59	-1	1288064..1288918	-	284	82750920	-	SAB1183c	-	hypothetical protein
1141	 29.27	-1	1289234..1289824	+	196	82750921	-	SAB1184	-	hypothetical protein
1142	 31.31	0	1289878..1291260	-	460	82750922	-	SAB1185c	-	aspartate kinase
1143	 32.40	0	1291451..1292731	+	426	82750923	-	SAB1186	-	homoserine dehydrogenase
1144	 35.31	0	1292737..1293798	+	353	82750924	thrC	SAB1187	-	threonine synthase
1145	 35.96	0	1293800..1294714	+	304	82750925	thrB	SAB1188	-	homoserine kinase
1146	 32.59	0	1294772..1295575	+	267	82750926	-	SAB1189	-	hypothetical protein
1147	 31.43	0	1295904..1296218	-	104	82750927	-	SAB1190c	-	hypothetical protein
1148	 33.20	0	1296436..1297890	-	484	82750928	-	SAB1191c	-	amino acid permease
1149	 35.96	0	1298088..1299611	+	507	82750929	-	SAB1192	-	catalase
1150	 33.33	0	1299702..1299851	+	49	161777619	rpmG	SAB1193	-	50S ribosomal protein L33
1151	 32.59	0	1300305..1300574	+	89	82750931	rpsN	SAB1194	-	30S ribosomal protein S14
1152	 33.74	0	1300731..1301708	+	325	82750932	-	SAB1195	-	guanosine 5'-monophosphate oxidoreductase
1153	 36.22	0	1303125..1303748	-	207	82750933	dinR	SAB1197c	-	LexA repressor
1154	 32.49	0	1303888..1304124	+	78	82750934	-	SAB1198	-	hypothetical protein
1155	 27.50	-1	1304261..1304500	+	79	82750935	-	SAB1199	-	hypothetical protein
1156	 36.30	0	1304621..1306609	+	662	82750936	-	SAB1200	-	transketolase
1157	 31.28	0	1306887..1307129	+	80	82750937	-	SAB1201	-	hypothetical protein
1158	 30.77	0	1307308..1307775	+	155	82750938	-	SAB1202	-	hypothetical protein
1159	 31.11	0	1307899..1309020	+	373	82750939	-	SAB1203	-	exonuclease
1160	 28.46	-1	1309024..1311996	+	990	82750940	-	SAB1204	-	exonuclease
1161	 30.85	0	1312124..1312486	-	120	82750941	mscL	SAB1205c	-	large-conductance mechanosensitive channel
1162	 35.94	0	1312690..1314336	+	548	82750942	opuD	SAB1206	-	glycine betaine transporter
1163	 35.74	0	1314926..1317631	+	901	82750943	citB	SAB1207	-	aconitate hydratase
1164	 32.26	0	1317810..1318277	+	155	82750944	-	SAB1208	-	hypothetical protein
1165	 33.33	0	1318484..1318780	-	98	82750945	-	SAB1209c	-	hypothetical protein
1166	 33.83	0	1319158..1319766	-	202	82750946	-	SAB1210c	-	hypothetical protein
1167	 34.78	0	1319966..1321963	+	665	82750947	grlB	SAB1211	-	DNA topoisomerase IV subunit B
1168	 32.17	0	1321963..1324365	+	800	82750948	grlA	SAB1212	-	DNA topoisomerase IV subunit A
1169	 35.31	0	1324615..1326081	+	488	82750949	-	SAB1213	-	amino acid carrier protein
1170	 27.46	-1	1326571..1327422	+	283	82750950	-	SAB1214	-	transcription antiterminator
1171	 30.60	0	1327557..1328765	+	402	82750951	-	SAB1215	-	hypothetical protein
1172	 30.96	0	1329247..1331769	+	840	82750952	mprF	SAB1216	-	hypothetical protein
1173	 33.73	0	1331972..1332481	-	169	82750953	msrA1	SAB1217c	-	methionine sulfoxide reductase A
1174	 33.43	0	1332618..1333601	+	327	82750954	-	SAB1218	-	peptide methionine sulfoxide reductase regulator
1175	 33.49	0	1334022..1335284	+	420	82750955	-	SAB1219	-	DNA damage repair protein
1176	 33.15	0	1335421..1336512	-	363	82750956	-	SAB1220c	-	prephenate dehydrogenase
1177	 33.04	0	1336677..1337708	+	343	82750957	-	SAB1221	-	peptidase
1178	 32.27	0	1338201..1339607	+	468	82750958	trpE	SAB1222	-	anthranilate synthase component I
1179	 34.92	0	1339604..1340170	+	188	82750959	trpG	SAB1223	-	anthranilate synthase component II
1180	 33.93	0	1340167..1341174	+	335	82750960	trpD	SAB1224	-	anthranilate phosphoribosyltransferase
1181	 31.29	0	1341176..1341958	+	260	82750961	trpC	SAB1225	-	indole-3-glycerol-phosphate synthase
1182	 32.07	0	1341958..1342590	+	210	82750962	trpF	SAB1226	-	N-5'-phosphoribosyl-anthranilate isomerase
1183	 38.02	+1	1342583..1343797	+	404	82750963	trpB	SAB1227	-	tryptophan synthase subunit beta
1184	 33.88	0	1343790..1344518	+	242	82750964	trpA	SAB1228	-	tryptophan synthase subunit alpha
1185	 31.34	0	1344801..1346102	+	433	82750965	femA	SAB1229	-	factor essential for expression of methicillin resistance
1186	 31.43	0	1346121..1347380	+	419	82750966	femB	SAB1230	-	methicillin resistance factor protein
1187	 23.56	-2	1347667..1348413	+	248	82750967	-	SAB1231	-	hypothetical protein
1188	 34.63	0	1348653..1349039	+	128	82750968	-	SAB1232	-	hypothetical protein
1189	 33.12	0	1349241..1349714	-	157	82750969	-	SAB1233c	-	hypothetical protein
1190	 32.91	0	1349838..1350539	-	233	82750970	-	SAB1234c	-	oligopeptide transporter ATPase
1191	 31.65	0	1350532..1351305	-	257	82750971	-	SAB1235c	-	oligopeptide transporter ATPase
1192	 32.73	0	1351292..1352122	-	276	82750972	-	SAB1236c	-	oligopeptide membrane permease
1193	 30.90	0	1352115..1353101	-	328	82750973	-	SAB1237c	-	oligopeptide membrane permease
1194	 26.29	-2	1353231..1353443	-	70	82750974	-	SAB1238c	-	hypothetical protein
1195	 27.25	-1	1353406..1353750	-	114	82750975	-	SAB1239c	-	hypothetical protein
1196	 33.44	0	1353955..1355769	+	604	82750976	-	SAB1240	-	oligoendopeptidase F
1197	 31.62	0	1355911..1356552	-	213	82750977	-	SAB1241c	-	phosphate transporter PhoU
1198	 33.10	0	1356559..1357410	-	283	82750978	-	SAB1242c	-	phosphate import ATP-binding protein
1199	 35.51	0	1357457..1358374	-	305	82750979	-	SAB1243c	-	phosphate ABC transporter permease
1200	 35.49	0	1358376..1359302	-	308	82750980	-	SAB1244c	-	phosphate ABC transporter permease
1201	 31.91	0	1359493..1360476	-	327	82750981	-	SAB1245c	-	phosphate-binding lipoprotein
1202	 34.99	0	1360848..1361750	-	300	82750982	-	SAB1246c	-	hypothetical protein
1203	 33.21	0	1361896..1363497	+	533	82750983	-	SAB1247	-	ATP-binding ABC transporter protein
1204	 34.08	0	1364269..1365474	+	401	82750984	lysC	SAB1248	-	aspartate kinase
1205	 35.56	0	1365538..1366527	+	329	82750985	asd	SAB1249	-	aspartate semialdehyde dehydrogenase
1206	 34.91	0	1366529..1367416	+	295	82750986	dapA	SAB1250	-	dihydrodipicolinate synthase
1207	 37.07	+1	1367413..1368135	+	240	82750987	dapB	SAB1251	-	dihydrodipicolinate reductase
1208	 37.64	+1	1368162..1368881	+	239	82750988	dapD	SAB1252	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1209	 34.29	0	1369024..1370175	+	383	82750989	-	SAB1253	-	peptidase
1210	 33.98	0	1370180..1371265	+	361	82750990	alr	SAB1254	-	alanine racemase
1211	 33.73	0	1371255..1372520	+	421	82750991	lysA	SAB1255	-	diaminopimelate decarboxylase
1212	 31.39	0	1372614..1373231	-	205	82750992	-	SAB1256c	-	transcriptional regulator
1213	 21.39	-2	1373365..1373766	-	133	82750993	-	SAB1257c	-	hypothetical protein
1214	 37.81	+1	1373964..1374164	-	66	82750994	cspA	SAB1258c	-	cold shock protein
1215	 27.83	-1	1374335..1374643	-	102	82750995	-	SAB1259c	-	hypothetical protein
1216	 35.93	0	1374802..1375071	+	89	82750996	-	SAB1260	-	hypothetical protein
1217	 29.84	0	1375090..1375719	+	209	82750997	-	SAB1261	-	hypothetical protein
1218	 32.98	0	1375751..1376887	+	378	82750998	-	SAB1262	-	toxic ion resistance protein
1219	 32.14	0	1376961..1378304	-	447	82750999	-	SAB1263c	-	branched-chain amino acid carrier II protein
1220	 31.64	0	1378529..1380415	-	628	82751000	-	SAB1264c	-	hypothetical protein
1221	 32.45	0	1380429..1381220	-	263	82751001	-	SAB1265c	-	nitric oxide reductase protein
1222	 28.43	-1	1381401..1381604	-	67	82751002	-	SAB1266c	-	hypothetical protein
1223	 34.57	0	1381632..1382441	-	269	82751003	-	SAB1267c	-	hypothetical protein
1224	 34.52	0	1383021..1384289	-	422	82751004	odhB	SAB1268c	-	dihydrolipoamide acetyltransferase
1225	 35.55	0	1384303..1387101	-	932	82751005	kgd	SAB1269c	-	alpha-ketoglutarate decarboxylase
1226	 29.35	-1	1387390..1388745	-	451	82751006	arlS	SAB1270c	-	two-component sensor histidine kinase
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.