IslandPath Analysis: Staphylococcus aureus RF122



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 33.03   STD DEV: 3.30
Staphylococcus aureus RF122, complete genome - 1..2742531
2509 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
988	 28.49	-1	1106075..1106260	-	61	82750767	-	SAB1024c	-	hypothetical protein
989	 25.70	-2	1106470..1106718	-	82	82750768	-	SAB1025c	-	hypothetical protein
990	 30.34	0	1106882..1107115	-	77	82750769	-	SAB1026c	-	hypothetical protein
991	 34.06	0	1107592..1108551	-	319	82750770	hla	SAB1027c	-	alpha-hemolysin precursor
992	 23.81	-2	1109224..1109370	+	48	82750771	-	SAB1028	-	hypothetical protein
993	 28.28	-1	1109354..1109551	+	65	82750772	-	SAB1029	-	hypothetical protein
994	 29.99	0	1109995..1110711	-	238	82750773	-	SAB1030c	-	superantigen-like protein
995	 29.61	-1	1110819..1111544	-	241	82750774	-	SAB1031c	-	superantigen-like protein
996	 30.30	0	1111640..1112365	-	241	82750775	-	SAB1032c	-	superantigen-like protein
997	 34.23	0	1112803..1113804	+	333	82750776	-	SAB1033	-	ornithine carbamoyltransferase
998	 33.44	0	1113827..1114759	+	310	82750777	-	SAB1034	-	carbamate kinase
999	 35.97	0	1114930..1116486	+	518	82750778	-	SAB1035	-	hypothetical protein
1000	 24.31	-2	1116638..1116925	-	95	82750779	-	SAB1036c	-	hypothetical protein
1001	 31.75	0	1117338..1118285	-	315	82750780	-	SAB1037c	-	exfoliative toxin
1002	 30.42	0	1120088..1120774	+	228	82750782	-	SAB1039	-	haloacid dehalgenase-like hydrolase
1003	 32.43	0	1120882..1121322	-	146	82750783	-	SAB1040c	-	hypothetical protein
1004	 32.28	0	1121517..1123130	+	537	82750784	-	SAB1041	-	hypothetical protein
1005	 33.80	0	1123275..1123706	+	143	82750785	-	SAB1042	-	cell division protein MraZ
1006	 35.90	0	1123722..1124657	+	311	82750786	-	SAB1043	-	S-adenosyl-methyltransferase
1007	 31.25	0	1124641..1125072	+	143	82750787	-	SAB1044	-	cell division protein
1008	 34.68	0	1125053..1127287	+	744	82750788	pbpA	SAB1045	-	penicillin-binding protein 1
1009	 32.61	0	1127579..1128544	+	321	82750789	mraY	SAB1046	-	phospho-N-acetylmuramoyl-pentapeptide- transferase
1010	 32.74	0	1128546..1129895	+	449	82750790	murD	SAB1047	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1011	 30.91	0	1129911..1131230	+	439	82750791	-	SAB1048	-	cell division protein
1012	 32.48	0	1131335..1132741	+	468	82750792	ftsA	SAB1049	-	cell division protein
1013	 38.53	+1	1132774..1133946	+	390	82750793	ftsZ	SAB1050	-	cell division protein FtsZ
1014	 31.69	0	1134207..1134998	+	263	82750794	-	SAB1051	-	hypothetical protein
1015	 32.89	0	1135016..1135690	+	224	82750795	-	SAB1052	-	hypothetical protein
1016	 34.93	0	1135687..1136250	+	187	82750796	-	SAB1053	-	hypothetical protein
1017	 26.80	-1	1136262..1136552	+	96	82750797	-	SAB1054	-	hypothetical protein
1018	 34.14	0	1137464..1138081	+	205	82750798	-	SAB1056	-	hypothetical protein
1019	 34.97	0	1138302..1141055	+	917	82750799	ileS	SAB1057	-	isoleucyl-tRNA synthetase
1020	 31.95	0	1141345..1142142	+	265	82750800	-	SAB1058	-	hypothetical protein
1021	 27.03	-1	1143377..1143868	+	163	82750801	lspA	SAB1060	-	lipoprotein signal peptidase
1022	 33.44	0	1143868..1144785	+	305	82750802	-	SAB1061	-	hypothetical protein
1023	 34.09	0	1145186..1145713	+	175	82750803	pyrR	SAB1062	-	pyrimidine regulatory protein PyrR
1024	 35.02	0	1145931..1147238	+	435	82750804	pyrP	SAB1063	-	uracil permease
1025	 32.04	0	1147266..1148036	+	256	82750805	pyrB	SAB1064	-	aspartate carbamoyltransferase catalytic subunit
1026	 35.92	0	1148165..1149439	+	424	82750806	pyrC	SAB1065	-	dihydroorotase
1027	 35.24	0	1149441..1150541	+	366	82750807	pyrAA	SAB1066	-	carbamoyl phosphate synthase small subunit
1028	 35.54	0	1150534..1153707	+	1057	82750808	carB	SAB1067	-	carbamoyl phosphate synthase large subunit
1029	 34.20	0	1153817..1154509	+	230	82750809	pyrF	SAB1068	-	orotidine-5-phosphate decarboxylase
1030	 32.84	0	1154509..1155120	+	203	82750810	pyrE	SAB1069	-	orotate phosphoribosyltransferase
1031	 24.88	-2	1155150..1155362	+	70	82750811	-	SAB1070	-	hypothetical protein
1032	 33.58	0	1155799..1156200	+	133	82750812	-	SAB1071	-	hypothetical protein
1033	 31.98	0	1156663..1158360	-	565	82750813	-	SAB1072c	-	fibronectin/fibrinogen-binding protein
1034	 33.33	0	1158635..1159258	+	207	82750814	gmk	SAB1073	-	guanylate kinase
1035	 32.88	0	1159258..1159476	+	72	82750815	-	SAB1074	-	DNA-directed RNA polymerase omega chain
1036	 35.17	0	1159692..1160891	+	399	82750816	-	SAB1075	-	pantothenate metabolism flavoprotein
1037	 34.83	0	1160891..1163299	+	802	82750817	priA	SAB1076	-	primosomal protein
1038	 30.47	0	1164914..1165192	-	92	82750818	-	SAB1078c	-	hypothetical protein
1039	 33.74	0	1165416..1165904	+	162	82750819	def	SAB1079	-	peptide deformylase 1
1040	 35.04	0	1165897..1166832	+	311	82750820	fmt	SAB1080	-	methionyl-tRNA formyltransferase
1041	 33.33	0	1166829..1168136	+	435	82750821	sun	SAB1081	-	RNA-binding protein
1042	 33.61	0	1168139..1169233	+	364	82750822	-	SAB1082	-	hypothetical protein
1043	 32.26	0	1169240..1169983	+	247	82750823	-	SAB1083	-	phosphoprotein phosphatase
1044	 33.23	0	1169980..1171974	+	664	82750824	pknB	SAB1084	-	protein kinase
1045	 31.28	0	1172202..1173077	+	291	82750825	-	SAB1085	-	hypothetical protein
1046	 33.49	0	1173078..1173722	+	214	82750826	-	SAB1086	-	ribulose-phosphate 3-epimerase
1047	 32.71	0	1173729..1174370	+	213	82750827	-	SAB1087	-	hypothetical protein
1048	 37.57	+1	1174752..1174940	-	62	82750828	rpmB	SAB1088c	-	50S ribosomal protein L28
1049	 32.80	0	1175382..1175756	+	124	82750829	-	SAB1089	-	hypothetical protein
1050	 33.82	0	1175771..1177417	+	548	82750830	-	SAB1090	-	hypothetical protein
1051	 34.06	0	1177607..1179667	+	686	82750831	recG	SAB1091	-	ATP-dependent DNA helicase
1052	 32.11	0	1179859..1180431	+	190	82750832	-	SAB1092	-	fatty acid biosynthesis transcriptional regulator
1053	 35.36	0	1180436..1181422	+	328	82750833	-	SAB1093	-	putative glycerol-3-phosphate acyltransferase PlsX
1054	 33.98	0	1181415..1182341	+	308	82750834	fabD	SAB1094	-	malonyl CoA-acyl carrier protein transacylase
1055	 36.30	0	1182328..1183068	+	246	82750835	fabG	SAB1095	-	3-oxoacyl-(acyl-carrier protein) reductase
1056	 34.19	0	1183276..1183509	+	77	82750836	acpP	SAB1096	-	acyl carrier protein
1057	 34.02	0	1183625..1184356	+	243	82750837	-	SAB1097	-	ribonuclease III
1058	 31.99	0	1184503..1188069	+	1188	82750838	-	SAB1098	-	chromosome segregation SMC protein
1059	 34.69	0	1188069..1189319	+	416	82750839	-	SAB1099	-	signal recognition particle protein
1060	 27.93	-1	1189306..1189638	+	110	82750840	-	SAB1100	-	hypothetical protein
1061	 34.50	0	1189664..1191031	+	455	82750841	ffh	SAB1101	-	signal recognition particle protein
1062	 35.87	0	1191373..1191648	+	91	82750842	rpsP	SAB1102	-	30S ribosomal protein S16
1063	 31.94	0	1191836..1192339	+	167	82750843	rimM	SAB1103	-	16S rRNA processing protein
1064	 35.50	0	1192339..1193076	+	245	82750844	trmD	SAB1104	-	tRNA guanine-N(1)-methyltransferase
1065	 39.32	+1	1193179..1193529	+	116	82750845	rplS	SAB1105	-	50S ribosomal protein L19
1066	 33.90	0	1197005..1197889	+	294	82750846	rbgA	SAB1107	-	ribosomal biogenesis GTPase
1067	 34.51	0	1197873..1198640	+	255	82750847	-	SAB1108	-	ribonuclease HII
1068	 35.30	0	1198749..1199915	+	388	82750848	sucC	SAB1109	-	succinyl-CoA synthetase subunit beta
1069	 38.17	+1	1199937..1200845	+	302	82750849	-	SAB1110	-	succinyl-CoA synthetase subunit alpha
1070	 31.50	0	1201167..1202039	+	290	82750850	smf	SAB1111	-	DNA processing protein
1071	 34.78	0	1202213..1204288	+	691	82750851	topA	SAB1112	-	DNA topoisomerase I
1072	 35.86	0	1204444..1205751	+	435	82750852	gid	SAB1113	-	tRNA (uracil-5-)-methyltransferase Gid
1073	 32.22	0	1206170..1207066	+	298	82750853	-	SAB1114	-	integrase/recombinase
1074	 39.38	+1	1207063..1207608	+	181	82750854	hslV	SAB1115	-	ATP-dependent protease peptidase subunit
1075	 34.83	0	1207674..1209077	+	467	82750855	hslU	SAB1116	-	ATP-dependent protease ATP-binding subunit
1076	 32.04	0	1209102..1209875	+	257	82750856	codY	SAB1117	-	transcriptional repressor CodY
1077	 35.29	0	1210217..1210984	+	255	82750857	rpsB	SAB1118	-	30S ribosomal protein S2
1078	 36.96	+1	1211166..1212047	+	293	82750858	tsf	SAB1119	-	elongation factor Ts
1079	 35.96	0	1212184..1212906	+	240	82750859	smbA	SAB1120	-	uridylate kinase
1080	 34.77	0	1212925..1213479	+	184	82750860	frr	SAB1121	-	ribosome recycling factor
1081	 29.96	0	1213852..1214622	+	256	82750861	uppS	SAB1122	-	undecaprenyl pyrophosphate synthetase
1082	 32.31	0	1214629..1215411	+	260	82750862	cdsA	SAB1123	-	phosphatidate cytidylyltransferase
1083	 32.63	0	1215623..1216909	+	428	82750863	-	SAB1124	-	zinc metalloprotease
1084	 34.98	0	1216929..1218632	+	567	82750864	proS	SAB1125	-	prolyl-tRNA synthetase
1085	 34.70	0	1218890..1223206	+	1438	82750865	polC	SAB1126	-	DNA polymerase III PolC
1086	 32.69	0	1223496..1223963	+	155	82750866	-	SAB1127	-	hypothetical protein
1087	 35.88	0	1223984..1225159	+	391	82750867	nusA	SAB1128	-	transcription elongation factor NusA
33.03	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.