IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
384	 34.45	0	431181..432251	+	356	21282113	set18	MW0384	-	superantigen-like protein
385	 33.97	0	432616..433563	+	315	21282114	set19	MW0385	-	superantigen-like protein
386	 31.91	0	433927..434631	+	234	21282115	set20	MW0386	-	superantigen-like protein 5
387	 29.47	0	435077..435775	+	232	21282116	set21	MW0387	-	superantigen-like protein
388	 30.32	0	436197..436892	+	231	21282117	set22	MW0388	-	superantigen-like protein 7
389	 28.47	-1	437231..437929	+	232	21282118	set23	MW0389	-	superantigen-like protein
390	 28.90	-1	438308..439006	+	232	21282119	set24	MW0390	-	superantigen-like protein
391	 29.53	0	439365..440048	+	227	21282120	set25	MW0391	-	superantigen-like protein
392	 37.89	+1	440310..441866	+	518	21282121	hsdM	MW0392	-	type I site-specific deoxyribonuclease LldI chain hsdM
393	 28.65	-1	441859..443118	+	419	21282122	hsdS	MW0393	-	specificity determinant HsdS
394	 30.16	0	443524..444216	+	230	21282123	set26	MW0394	-	superantigen-like protein
395	 32.27	0	444238..445740	+	500	21282124	-	MW0395	-	hypothetical protein
396	 33.33	0	445847..446155	-	102	21282125	-	MW0396	-	hypothetical protein
397	 27.80	-1	446491..447303	+	270	21282126	lpl10	MW0397	-	hypothetical protein
398	 29.83	0	447351..448121	+	256	21282127	lpl11	MW0398	-	hypothetical protein
399	 30.68	0	448153..448944	+	263	21282128	lpl12	MW0399	-	hypothetical protein
400	 29.95	0	448996..449793	+	265	21282129	lpl13	MW0400	-	hypothetical protein
401	 29.27	-1	450050..450787	+	245	21282130	lpl14	MW0401	-	hypothetical protein
402	 30.02	0	450777..452102	+	441	21282131	-	MW0402	-	hypothetical protein
403	 26.85	-1	452099..452422	+	107	21282132	-	MW0403	-	hypothetical protein
404	 33.02	0	452441..452755	+	104	21282133	-	MW0404	-	hypothetical protein
405	 30.26	0	453039..453233	-	64	21282134	-	MW0405	-	hypothetical protein
406	 37.16	+1	453431..454633	+	400	21282135	-	MW0406	-	hypothetical protein
407	 37.24	+1	456218..457702	+	494	21282136	ndhF	MW0407	-	NADH dehydrogenase subunit 5
408	 38.69	+1	457715..460420	+	901	21282137	-	MW0408	-	hypothetical protein
409	 33.61	0	460582..460944	+	120	21282138	-	MW0409	-	hypothetical protein
410	 34.22	0	461627..462301	+	224	21282139	-	MW0410	-	hypothetical protein
411	 34.15	0	462338..463072	+	244	21282140	-	MW0411	-	hypothetical protein
412	 44.74	+2	463250..463363	+	37	21282141	-	MW0412	-	hypothetical protein
413	 34.82	0	463525..464865	+	446	21282142	-	MW0413	-	hypothetical protein
414	 38.85	+1	465082..465987	+	301	21282143	cysM	MW0414	-	hypothetical protein
415	 35.96	0	465980..467122	+	380	21282144	metB	MW0415	-	cystathionine gamma-synthase
416	 34.99	0	467419..468444	+	341	21282145	-	MW0416	-	hypothetical protein
417	 36.52	+1	468448..469107	+	219	21282146	-	MW0417	-	hypothetical protein
418	 33.33	0	469144..469986	+	280	21282147	-	MW0418	-	hypothetical protein
419	 36.52	+1	470318..471322	+	334	21282148	-	MW0419	-	hypothetical protein
420	 32.59	0	471507..471776	-	89	21282149	-	MW0420	-	hypothetical protein
421	 34.09	0	471925..472320	+	131	21282150	-	MW0421	-	hypothetical protein
422	 36.01	0	472310..472795	+	161	21282151	-	MW0422	-	hypothetical protein
423	 32.82	0	472964..473746	-	260	21282152	-	MW0423	-	hypothetical protein
424	 33.51	0	473743..474855	-	370	21282153	-	MW0424	-	hypothetical protein
425	 33.22	0	474976..475860	-	294	21282154	gltC	MW0425	-	transcription activator of glutamate synthase operon
426	 37.71	+1	476042..480541	+	1499	21282155	gltB	MW0426	-	glutamate synthase large subunit
427	 38.32	+1	480559..482022	+	487	21282156	gltD	MW0427	-	glutamate synthase subunit beta
428	 37.54	+1	482853..484280	+	475	21282157	treP	MW0428	-	PTS enzyme II
429	 36.44	+1	484344..485984	+	546	21282158	-	MW0429	-	alpha-glucosidase
430	 33.88	0	486009..486737	+	242	21282159	-	MW0430	-	hypothetical protein
431	 33.33	0	487177..487242	+	21	21282160	-	MW0431	-	hypothetical protein
432	 32.95	0	487380..487904	+	174	21282161	-	MW0432	-	hypothetical protein
433	 36.10	0	487973..489670	+	565	21282162	dnaX	MW0433	-	DNA polymerase III gamma and tau subunits
434	 39.62	+1	489760..490077	+	105	21282163	-	MW0434	-	hypothetical protein
435	 36.35	+1	490084..490680	+	198	21282164	recR	MW0435	-	recombination protein RecR
436	 32.96	0	497404..498741	+	445	21282165	-	MW0436	-	hypothetical protein
437	 33.66	0	498743..499360	+	205	21282166	tmk	MW0437	-	hypothetical protein
438	 37.27	+1	499388..499717	+	109	21282167	-	MW0438	-	hypothetical protein
439	 30.74	0	499931..500857	+	308	21282168	holB	MW0439	-	DNA polymerase III delta prime subunit
440	 32.71	0	500858..501661	+	267	21282169	-	MW0440	-	hypothetical protein
441	 31.90	0	501678..502025	+	115	21282170	-	MW0441	-	DNA replication intiation control protein YabA
442	 33.61	0	502299..503024	+	241	21282171	-	MW0442	-	hypothetical protein
443	 33.73	0	503017..503265	+	82	21282172	-	MW0443	-	hypothetical protein
444	 35.48	0	503267..504106	+	279	21282173	-	MW0444	-	hypothetical protein
445	 34.09	0	504391..506364	+	657	21282174	metS	MW0445	-	methionyl-tRNA synthetase
446	 36.69	+1	506395..507168	+	257	21282175	-	MW0446	-	hypothetical protein
447	 35.20	0	507335..507871	+	178	21282176	-	MW0447	-	hypothetical protein
448	 32.77	0	507882..508775	+	297	21282177	ksgA	MW0448	-	dimethyladenosine transferase
449	 32.20	0	508875..509138	+	87	21282178	veg	MW0449	-	hypothetical protein
450	 34.86	0	509448..510296	+	282	21282179	-	MW0450	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
451	 32.36	0	510310..511134	+	274	21282180	purR	MW0451	-	purine operon repressor
452	 34.65	0	511151..511531	+	126	21282181	-	MW0452	-	hypothetical protein
453	 36.63	+1	511603..511905	+	100	21282182	spoVG	MW0453	-	regulatory protein SpoVG
454	 39.39	+1	512249..513601	+	450	21282183	gcaD	MW0454	-	hypothetical protein
455	 35.51	0	513748..514713	+	321	21282184	prs	MW0455	-	ribose-phosphate pyrophosphokinase
456	 37.61	+1	514863..515516	+	217	21282185	rplY	MW0456	-	50S ribosomal protein L25/general stress protein Ctc
457	 32.98	0	515827..516399	+	190	21282186	pth	MW0457	-	peptidyl-tRNA hydrolase
458	 34.22	0	516399..519905	+	1168	21282187	mfd	MW0458	-	transcription-repair coupling factor
459	 32.94	0	519895..521421	+	508	21282188	-	MW0459	-	hypothetical protein
460	 35.01	0	521421..522614	+	397	21282189	-	MW0460	-	hypothetical protein
461	 34.85	0	522611..522874	+	87	21282190	-	MW0461	-	hypothetical protein
462	 33.08	0	522892..523284	+	130	21282191	-	MW0462	-	hypothetical protein
463	 34.33	0	523389..523790	+	133	21282192	-	MW0463	-	hypothetical protein
464	 30.94	0	523970..525265	+	431	21282193	-	MW0464	-	hypothetical protein
465	 30.37	0	525270..525809	+	179	21282194	-	MW0465	-	hypothetical protein
466	 35.63	0	526066..528159	+	697	21282195	ftsH	MW0466	-	cell-division protein (ATP-dependent Zn metallopeptidase)
467	 36.51	+1	528388..529269	+	293	21282196	-	MW0467	-	hypothetical protein
468	 38.05	+1	529448..530380	+	310	21282197	cysK	MW0468	-	hypothetical protein
469	 36.07	0	530596..531399	+	267	21282198	folP	MW0469	-	dihydropteroate synthase
470	 36.07	0	531377..531742	+	121	21282199	folB	MW0470	-	dihydroneopterin aldolase
471	 33.33	0	531739..532215	+	158	21282200	folK	MW0471	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridin e pyrophosphokinase
472	 34.81	0	532754..534241	+	495	21282201	lysS	MW0472	-	lysyl-tRNA synthetase
473	 29.28	-1	546677..548059	-	460	21282202	-	MW0473	-	hypothetical protein
474	 39.08	+1	548163..549050	+	295	21282203	-	MW0474	-	pyridoxine biosynthesis protein
475	 34.05	0	549054..549614	+	186	21282204	-	MW0475	-	glutamine amidotransferase subunit PdxT
476	 33.33	0	549820..551034	-	404	21282205	nupC	MW0476	-	pyrimidine nucleoside transport protein
477	 30.95	0	551192..551653	+	153	21282206	ctsR	MW0477	-	hypothetical protein
478	 34.04	0	551672..552238	+	188	21282207	-	MW0478	-	hypothetical protein
479	 32.44	0	552228..553235	+	335	21282208	-	MW0479	-	ATP:guanido phosphotransferase
480	 33.98	0	553249..555705	+	818	21282209	clpC	MW0480	-	endopeptidase
481	 36.85	+1	556189..557553	+	454	21282210	radA	MW0481	-	DNA repair protein RadA
482	 30.45	0	557578..558651	+	357	21282211	-	MW0482	-	hypothetical protein
483	 34.16	0	559208..560662	+	484	21282212	gltX	MW0483	-	glutamyl-tRNA synthetase
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.