IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2493	 35.83	0	2661197..2661517	+	106	21284222	-	MW2493	-	hypothetical protein
2494	 33.77	0	2661737..2661967	+	76	21284223	-	MW2494	-	hypothetical protein
2495	 34.66	0	2662130..2662507	-	125	21284224	-	MW2495	-	hypothetical protein
2496	 32.60	0	2662524..2663345	-	273	21284225	-	MW2496	-	hypothetical protein
2497	 33.67	0	2663365..2663664	-	99	21284226	-	MW2497	-	hypothetical protein
2498	 31.54	0	2663796..2664353	+	185	21284227	-	MW2498	-	hypothetical protein
2499	 38.16	+1	2664346..2665050	+	234	21284228	-	MW2499	-	hypothetical protein
2500	 34.32	0	2665148..2666158	+	336	21284229	-	MW2500	-	hypothetical protein
2501	 37.79	+1	2666178..2667008	+	276	21284230	-	MW2501	-	hypothetical protein
2502	 35.47	0	2667155..2668045	-	296	21284231	-	MW2502	-	hypothetical protein
2503	 34.53	0	2668142..2669482	-	446	21284232	-	MW2503	-	hypothetical protein
2504	 35.50	0	2669476..2670582	-	368	21284233	-	MW2504	-	hypothetical protein
2505	 27.61	-1	2670877..2671173	-	98	21284234	-	MW2505	-	hypothetical protein
2506	 36.59	+1	2671161..2671529	-	122	21284235	-	MW2506	-	hypothetical protein
2507	 32.97	0	2671544..2671819	-	91	21284236	-	MW2507	-	hypothetical protein
2508	 37.83	+1	2672161..2673027	-	288	21284237	-	MW2508	-	hypothetical protein
2509	 35.31	0	2673245..2674309	+	354	21284238	-	MW2509	-	dihydroorotate dehydrogenase 2
2510	 30.43	0	2674464..2674739	+	91	21284239	-	MW2510	-	hypothetical protein
2511	 33.75	0	2674925..2675647	-	240	21284240	-	MW2511	-	hypothetical protein
2512	 36.67	+1	2676001..2676450	+	149	21284241	-	MW2512	-	hypothetical protein
2513	 30.44	0	2676531..2677118	-	195	21284242	-	MW2513	-	hypothetical protein
2514	 36.60	+1	2677261..2678943	+	560	21284243	-	MW2514	-	hypothetical protein
2515	 32.83	0	2679041..2679637	-	198	21284244	-	MW2515	-	hypothetical protein
2516	 33.33	0	2679758..2680141	-	127	21284245	panD	MW2516	-	aspartate alpha-decarboxylase
2517	 36.27	+1	2680143..2680994	-	283	21284246	panC	MW2517	-	pantoate--beta-alanine ligase
2518	 36.14	0	2680987..2681805	-	272	21284247	panB	MW2518	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
2519	 37.51	+1	2681878..2682738	+	286	21284248	-	MW2519	-	2-dehydropantoate 2-reductase
2520	 35.89	0	2682824..2683528	-	234	21284249	-	MW2520	-	hypothetical protein
2521	 35.52	0	2683806..2684765	-	319	21284250	-	MW2521	-	L-lactate dehydrogenase
2522	 37.34	+1	2685452..2686900	+	482	21284251	-	MW2522	-	hypothetical protein
2523	 37.70	+1	2686980..2688353	-	457	21284252	-	MW2523	-	4-aminobutyrate aminotransferase
2524	 27.58	-1	2688575..2688991	+	138	21284253	-	MW2524	-	hypothetical protein
2525	 34.12	0	2689114..2690004	+	296	21284254	-	MW2525	-	fructose-1,6-bisphosphate aldolase
2526	 36.67	+1	2690198..2691694	-	498	21284255	mqo2	MW2526	-	malate:quinone oxidoreductase
2527	 26.83	-1	2692197..2692319	+	40	21284256	-	MW2527	-	hypothetical protein
2528	 36.52	+1	2692379..2693977	-	532	21284257	-	MW2528	-	acetate-CoA ligase
2529	 31.08	0	2694171..2694614	-	147	21284258	-	MW2529	-	hypothetical protein
2530	 27.70	-1	2694894..2695106	-	70	21284259	-	MW2530	-	hypothetical protein
2531	 38.83	+1	2695384..2697093	-	569	21284260	betA	MW2531	-	choline dehydrogenase
2532	 37.09	+1	2697354..2698844	-	496	21284261	gbsA	MW2532	-	glycine betaine aldehyde dehydrogenase gbsA
2533	 35.10	0	2699094..2699660	+	188	21284262	-	MW2533	-	hypothetical protein
2534	 32.90	0	2699848..2700534	-	228	21284263	-	MW2534	-	hypothetical protein
2535	 35.74	0	2700793..2702415	-	540	21284264	cudT	MW2535	-	choline transporter
2536	 32.22	0	2702934..2703470	-	178	21284265	-	MW2536	-	hypothetical protein
2537	 34.74	0	2703467..2705317	-	616	21284266	nrdD	MW2537	-	anaerobic ribonucleoside triphosphate reductase
2538	 36.11	0	2705563..2706933	-	456	21284267	-	MW2538	-	hypothetical protein
2539	 36.96	+1	2707409..2708014	-	201	21284268	-	MW2539	-	precorrin-2 dehydrogenase
2540	 35.14	0	2708077..2709957	-	626	21284269	-	MW2540	-	sulfite reductase flavoprotein
2541	 31.12	0	2710352..2710849	-	165	21284270	-	MW2541	-	hypothetical protein
2542	 31.28	0	2712273..2714273	-	666	21284271	-	MW2542	-	hypothetical protein
2543	 34.92	0	2714270..2715025	-	251	21284272	-	MW2543	-	hypothetical protein
2544	 30.07	0	2715133..2716020	-	295	21284273	-	MW2544	-	hypothetical protein
2545	 29.58	0	2716031..2716696	-	221	21284274	-	MW2545	-	hypothetical protein
2546	 31.84	0	2716722..2716922	-	66	21284275	-	MW2546	-	hypothetical protein
2547	 35.30	0	2717120..2718544	+	474	21284276	phoB	MW2547	-	alkaline phosphatase III precursor
2548	 30.39	0	2718604..2718705	-	33	21284277	-	MW2548	-	hypothetical protein
2549	 32.49	0	2718827..2719300	-	157	21284278	-	MW2549	-	hypothetical protein
2550	 32.94	0	2719527..2720288	-	253	21284279	-	MW2550	-	hypothetical protein
2551	 39.17	+1	2720404..2723127	-	907	21284280	clfB	MW2551	-	clumping factor B
2552	 29.50	0	2723477..2724181	-	234	21284281	-	MW2552	-	hypothetical protein
2553	 37.37	+1	2724280..2725221	-	313	161485719	arcC	MW2553	-	carbamate kinase
2554	 35.22	0	2725238..2726668	-	476	21284283	arcD	MW2554	-	arginine/oirnithine antiporter
2555	 33.33	0	2726759..2727769	-	336	21284284	arcB	MW2555	-	ornithine carbamoyltransferase
2556	 34.39	0	2727802..2729037	-	411	21284285	arcA	MW2556	-	arginine deiminase
2557	 29.33	-1	2729384..2729833	-	149	21284286	-	MW2557	-	hypothetical protein
2558	 35.62	0	2730200..2731729	-	509	21284287	aur	MW2558	-	zinc metalloproteinase aureolysin
2559	 30.87	0	2732153..2732680	-	175	21284288	isaB	MW2559	-	immunodominant antigen B
2560	 33.55	0	2732938..2733396	+	152	21284289	-	MW2560	-	hypothetical protein
2561	 31.04	0	2733636..2735510	+	624	21284290	-	MW2561	-	hypothetical protein
2562	 38.35	+1	2735587..2737539	+	650	21284291	-	MW2562	-	hypothetical protein
2563	 35.57	0	2737553..2738491	+	312	21284292	pmi	MW2563	-	mannose-6-phosphate isomerase
2564	 34.81	0	2738603..2741584	-	993	21284293	-	MW2564	-	hypothetical protein
2565	 32.63	0	2741795..2743654	+	619	21284294	-	MW2565	-	N-acetylmuramoyl-L-alanine amidase
2566	 34.76	0	2743919..2744479	-	186	21284295	-	MW2566	-	hypothetical protein
2567	 32.34	0	2744648..2746555	-	635	21284296	-	MW2567	-	hypothetical protein
2568	 32.97	0	2746797..2748155	-	452	21284297	-	MW2568	-	hypothetical protein
2569	 34.19	0	2748148..2749656	-	502	21284298	-	MW2569	-	hypothetical protein
2570	 34.25	0	2749674..2752064	-	796	21284299	-	MW2570	-	preprotein translocase subunit SecA
2571	 32.56	0	2752054..2753094	-	346	21284300	-	MW2571	-	hypothetical protein
2572	 35.82	0	2752991..2754559	-	522	21284301	-	MW2572	-	hypothetical protein
2573	 34.17	0	2754549..2756102	-	517	21284302	-	MW2573	-	hypothetical protein
2574	 28.88	-1	2756113..2757324	-	403	21284303	secY	MW2574	-	preprotein translocase subunit SecY
2575	 38.74	+1	2757454..2764281	-	2275	21284304	-	MW2575	-	hypothetical protein
2576	 36.80	+1	2764826..2765518	-	230	21284305	-	MW2576	-	hypothetical protein
2577	 31.64	0	2765831..2766775	+	314	21284306	-	MW2577	-	hypothetical protein
2578	 35.00	0	2767218..2767577	+	119	21284307	-	MW2578	-	hypothetical protein
2579	 33.99	0	2767662..2768273	-	203	21284308	-	MW2579	-	hypothetical protein
2580	 34.59	0	2768352..2768828	-	158	21284309	-	MW2580	-	methionine sulfoxide reductase A
2581	 33.13	0	2768831..2769331	-	166	21284310	-	MW2581	-	hypothetical protein
2582	 32.16	0	2769566..2770333	-	255	21284311	capC	MW2582	-	capsular polysaccharide biosynthesis
2583	 35.64	0	2770330..2771022	-	230	21284312	capB	MW2583	-	capsular polysaccharide biosynthesis
2584	 28.36	-1	2771039..2771701	-	220	21284313	capA	MW2584	-	capsular polysaccharide biosynthesis
2585	 27.45	-1	2772550..2773110	-	186	21284314	icaR	MW2585	-	ica operon transcriptional regulator
2586	 34.46	0	2773274..2774512	+	412	21284315	icaA	MW2586	-	N-glycosyltransferase PgaC
2587	 31.37	0	2774476..2774781	+	101	21284316	icaD	MW2587	-	intercellular adhesion protein D
2588	 29.10	-1	2774778..2775650	+	290	21284317	icaB	MW2588	-	intercellular adhesion protein B
2589	 27.26	-1	2775637..2776689	+	350	21284318	icaC	MW2589	-	intercellular adhesion protein C
2590	 34.31	0	2777135..2779180	-	681	21284319	lip	MW2590	-	triacylglycerol lipase precursor
2591	 34.28	0	2780270..2780902	-	210	21284320	hisI	MW2591	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2592	 37.15	+1	2780899..2781657	-	252	21284321	hisF	MW2592	-	cyclase-like protein hisF
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.