IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2413	 29.45	0	2567836..2568144	+	102	21284142	-	MW2413	-	hypothetical protein
2414	 22.22	-2	2568252..2568485	-	77	21284143	-	MW2414	-	hypothetical protein
2415	 30.82	0	2568466..2569659	-	397	21284144	-	MW2415	-	hypothetical protein
2416	 38.31	+1	2570042..2574157	-	1371	21284145	-	MW2416	-	hypothetical protein
2417	 22.78	-2	2574462..2574821	-	119	21284146	sarT	MW2417	-	hypothetical protein
2418	 24.87	-2	2575142..2575885	+	247	21284147	sarH2	MW2418	-	hypothetical protein
2419	 36.56	+1	2576097..2576963	-	288	21284148	gtaB	MW2419	-	UTP-glucose-1-phosphate uridyltransferase
2420	 35.95	0	2577143..2579974	-	943	21284149	fnbB	MW2420	-	hypothetical protein
2421	 37.07	+1	2580655..2583702	-	1015	21284150	fnb	MW2421	-	hypothetical protein
2422	 24.38	-2	2583837..2584037	-	66	21284151	-	MW2422	-	hypothetical protein
2423	 36.28	+1	2584171..2585529	-	452	21284152	gntP	MW2423	-	gluconate permease
2424	 37.64	+1	2585646..2587199	-	517	21284153	gntK	MW2424	-	gluconokinase
2425	 35.68	0	2587223..2587903	-	226	21284154	gntR	MW2425	-	gluconate operon transcriptional repressor
2426	 34.38	0	2588057..2588821	-	254	21284155	-	MW2426	-	hypothetical protein
2427	 32.61	0	2588986..2589678	-	230	21284156	-	MW2427	-	hypothetical protein
2428	 34.15	0	2589909..2590397	-	162	21284157	-	MW2428	-	hypothetical protein
2429	 32.73	0	2590464..2592287	-	607	21284158	-	MW2429	-	hypothetical protein
2430	 24.02	-2	2592799..2593002	-	67	21284159	-	MW2430	-	hypothetical protein
2431	 36.23	0	2593196..2594473	-	425	21284160	-	MW2431	-	hypothetical protein
2432	 32.68	0	2595020..2595631	+	203	21284161	-	MW2432	-	hypothetical protein
2433	 30.89	0	2596149..2596844	+	231	21284162	-	MW2433	-	hypothetical protein
2434	 26.46	-1	2596846..2597616	+	256	21284163	-	MW2434	-	hypothetical protein
2435	 33.44	0	2597990..2599954	+	654	21284164	fbp	MW2435	-	fructose-bisphosphatase
2436	 23.08	-2	2600100..2600177	+	25	21284165	-	MW2436	-	hypothetical protein
2437	 35.93	0	2600296..2601375	+	359	21284166	-	MW2437	-	hypothetical protein
2438	 37.04	+1	2601480..2602073	-	197	21284167	-	MW2438	-	hypothetical protein
2439	 35.83	0	2602104..2603063	-	319	21284168	-	MW2439	-	hypothetical protein
2440	 35.40	0	2603140..2603574	-	144	21284169	-	MW2440	-	hypothetical protein
2441	 33.33	0	2603800..2604084	+	94	21284170	-	MW2441	-	hypothetical protein
2442	 38.29	+1	2604258..2605064	+	268	21284171	-	MW2442	-	hypothetical protein
2443	 37.05	+1	2605185..2605856	-	223	21284172	-	MW2443	-	hypothetical protein
2444	 33.90	0	2606063..2607118	+	351	21284173	ddh	MW2444	-	D-lactate dehydrogenase
2445	 34.46	0	2607365..2608165	-	266	21284174	-	MW2445	-	hypothetical protein
2446	 24.84	-2	2608486..2609121	+	211	21284175	-	MW2446	-	hypothetical protein
2447	 27.80	-1	2609136..2609858	+	240	21284176	-	MW2447	-	hypothetical protein
2448	 32.85	0	2610020..2610640	-	206	21284177	srtA	MW2448	-	sortase
2449	 37.20	+1	2610834..2611325	+	163	21284178	-	MW2449	-	hypothetical protein
2450	 31.58	0	2611891..2612061	-	56	21284179	-	MW2450	-	hypothetical protein
2451	 41.11	+2	2612240..2613139	-	299	21284180	-	MW2451	-	hypothetical protein
2452	 32.75	0	2613153..2613833	-	226	21284181	-	MW2452	-	hypothetical protein
2453	 37.45	+1	2613836..2614879	-	347	21284182	-	MW2453	-	hypothetical protein
2454	 31.86	0	2615429..2615632	+	67	21284183	-	MW2454	-	hypothetical protein
2455	 34.84	0	2615824..2616750	+	308	21284184	-	MW2455	-	hypothetical protein
2456	 37.05	+1	2616831..2617799	-	322	21284185	-	MW2456	-	hypothetical protein
2457	 36.23	0	2617932..2618276	-	114	21284186	-	MW2457	-	hypothetical protein
2458	 37.23	+1	2618318..2618728	-	136	21284187	-	MW2458	-	hypothetical protein
2459	 36.48	+1	2619093..2621159	-	688	21284188	ptsG	MW2459	-	PTS system glucose-specific IIABC component
2460	 34.89	0	2621460..2623199	-	579	21284189	-	MW2460	-	pyruvate oxidase
2461	 34.06	0	2623246..2623935	-	229	21284190	-	MW2461	-	hypothetical protein
2462	 32.32	0	2623928..2624323	-	131	21284191	-	MW2462	-	hypothetical protein
2463	 33.33	0	2624536..2625363	-	275	21284192	-	MW2463	-	hypothetical protein
2464	 35.16	0	2625581..2625799	+	72	21284193	-	MW2464	-	hypothetical protein
2465	 34.72	0	2626189..2626620	+	143	21284194	-	MW2465	-	hypothetical protein
2466	 38.72	+1	2626758..2628038	-	426	21284195	mvaA	MW2466	-	hydroxymethylglutaryl-CoA reductase
2467	 36.68	+1	2628292..2629458	+	388	21284196	mvaS	MW2467	-	3-hydroxy-3-methylglutaryl CoA synthase
2468	 40.61	+2	2629628..2630149	-	173	21284197	adaB	MW2468	-	methylated DNA-protein cysteine methyltransferase
2469	 34.85	0	2630558..2632663	+	701	21284198	clpL	MW2469	-	ATP-dependent Clp proteinase chain clpL
2470	 33.33	0	2632732..2632902	-	56	21284199	-	MW2470	-	hypothetical protein
2471	 34.64	0	2632915..2634909	-	664	21284200	feoB	MW2471	-	hypothetical protein
2472	 31.14	0	2634921..2635148	-	75	21284201	-	MW2472	-	hypothetical protein
2473	 33.94	0	2635364..2637853	-	829	21284202	-	MW2473	-	hypothetical protein
2474	 30.97	0	2637998..2638546	+	182	21284203	-	MW2474	-	hypothetical protein
2475	 36.38	+1	2638901..2640445	-	514	21284204	rocA	MW2475	-	1-pyrroline-5-carboxylate dehydrogenase
2476	 36.50	+1	2640635..2641234	-	199	21284205	-	MW2476	-	hypothetical protein
2477	 31.25	0	2641473..2641664	+	63	21284206	-	MW2477	-	hypothetical protein
2478	 37.61	+1	2641904..2644312	+	802	21284207	copA	MW2478	-	copper-transporting ATPase copA
2479	 35.75	0	2644661..2644867	+	68	21284208	-	MW2479	-	hypothetical protein
2480	 36.54	+1	2644957..2645955	-	332	21284209	-	MW2480	-	D-lactate dehydrogenase
2481	 36.19	0	2645978..2647132	-	384	21284210	-	MW2481	-	hypothetical protein
2482	 35.32	0	2647559..2649067	-	502	21284211	crtN	MW2482	-	squalene synthase
2483	 31.37	0	2649079..2649942	-	287	21284212	crtM	MW2483	-	squalene desaturase
2484	 36.44	+1	2649979..2651106	-	375	21284213	-	MW2484	-	hypothetical protein
2485	 35.14	0	2651112..2652605	-	497	21284214	-	MW2485	-	hypothetical protein
2486	 29.32	-1	2652598..2653095	-	165	21284215	-	MW2486	-	hypothetical protein
2487	 36.72	+1	2653261..2654028	-	255	21284216	-	MW2487	-	hypothetical protein
2488	 33.44	0	2654389..2656200	-	603	21284217	-	MW2488	-	hypothetical protein
2489	 25.36	-2	2656712..2657200	-	162	21284218	-	MW2489	-	hypothetical protein
2490	 41.60	+2	2657476..2658177	-	233	21284219	isaA	MW2490	-	immunodominant antigen A
2491	 36.27	+1	2658785..2659840	-	351	21284220	-	MW2491	-	hypothetical protein
2492	 32.63	0	2660250..2660819	+	189	21284221	-	MW2492	-	hypothetical protein
2493	 35.83	0	2661197..2661517	+	106	21284222	-	MW2493	-	hypothetical protein
2494	 33.77	0	2661737..2661967	+	76	21284223	-	MW2494	-	hypothetical protein
2495	 34.66	0	2662130..2662507	-	125	21284224	-	MW2495	-	hypothetical protein
2496	 32.60	0	2662524..2663345	-	273	21284225	-	MW2496	-	hypothetical protein
2497	 33.67	0	2663365..2663664	-	99	21284226	-	MW2497	-	hypothetical protein
2498	 31.54	0	2663796..2664353	+	185	21284227	-	MW2498	-	hypothetical protein
2499	 38.16	+1	2664346..2665050	+	234	21284228	-	MW2499	-	hypothetical protein
2500	 34.32	0	2665148..2666158	+	336	21284229	-	MW2500	-	hypothetical protein
2501	 37.79	+1	2666178..2667008	+	276	21284230	-	MW2501	-	hypothetical protein
2502	 35.47	0	2667155..2668045	-	296	21284231	-	MW2502	-	hypothetical protein
2503	 34.53	0	2668142..2669482	-	446	21284232	-	MW2503	-	hypothetical protein
2504	 35.50	0	2669476..2670582	-	368	21284233	-	MW2504	-	hypothetical protein
2505	 27.61	-1	2670877..2671173	-	98	21284234	-	MW2505	-	hypothetical protein
2506	 36.59	+1	2671161..2671529	-	122	21284235	-	MW2506	-	hypothetical protein
2507	 32.97	0	2671544..2671819	-	91	21284236	-	MW2507	-	hypothetical protein
2508	 37.83	+1	2672161..2673027	-	288	21284237	-	MW2508	-	hypothetical protein
2509	 35.31	0	2673245..2674309	+	354	21284238	-	MW2509	-	dihydroorotate dehydrogenase 2
2510	 30.43	0	2674464..2674739	+	91	21284239	-	MW2510	-	hypothetical protein
2511	 33.75	0	2674925..2675647	-	240	21284240	-	MW2511	-	hypothetical protein
2512	 36.67	+1	2676001..2676450	+	149	21284241	-	MW2512	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.