IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2214	 26.91	-1	2360055..2360381	-	108	21283943	-	MW2214	-	hypothetical protein
2215	 27.96	-1	2360445..2361188	-	247	21283944	-	MW2215	-	hypothetical protein
2216	 27.97	-1	2361215..2363170	-	651	21283945	-	MW2216	-	hypothetical protein
2217	 38.89	+1	2363780..2364589	+	269	21283946	-	MW2217	-	hypothetical protein
2218	 30.23	0	2364606..2364734	-	42	21283947	-	MW2218	-	hypothetical protein
2219	 35.12	0	2365022..2366422	-	466	21283948	-	MW2219	-	hypothetical protein
2220	 33.33	0	2366517..2367599	-	360	21283949	-	MW2220	-	hypothetical protein
2221	 28.61	-1	2367847..2368269	+	140	21283950	-	MW2221	-	hypothetical protein
2222	 38.12	+1	2368506..2369006	+	166	21283951	ssaA	MW2222	-	hypothetical protein
2223	 29.05	-1	2369102..2369311	+	69	21283952	-	MW2223	-	hypothetical protein
2224	 35.74	0	2369368..2370321	+	317	21283953	-	MW2224	-	glycerate dehydrogenase
2225	 32.98	0	2370402..2371526	-	374	21283954	-	MW2225	-	hypothetical protein
2226	 32.56	0	2372251..2373027	-	258	21283955	-	MW2226	-	hypothetical protein
2227	 27.78	-1	2373049..2373300	-	83	21283956	-	MW2227	-	hypothetical protein
2228	 31.22	0	2373510..2373983	-	157	21283957	-	MW2228	-	hypothetical protein
2229	 35.53	0	2373983..2376937	-	984	21283958	-	MW2229	-	hypothetical protein
2230	 34.92	0	2377539..2378486	-	315	21283959	-	MW2230	-	hypothetical protein
2231	 32.08	0	2378619..2379416	-	265	21283960	-	MW2231	-	hypothetical protein
2232	 30.88	0	2379801..2380493	+	230	21283961	-	MW2232	-	hypothetical protein
2233	 27.94	-1	2380849..2381163	+	104	21283962	-	MW2233	-	putative transposase
2234	 30.35	0	2381140..2381877	-	245	21283963	-	MW2234	-	hypothetical protein
2235	 25.45	-2	2381926..2382255	+	109	21283964	-	MW2235	-	hypothetical protein
2236	 29.32	-1	2382700..2383572	+	290	21283965	-	MW2236	-	hypothetical protein
2237	 34.13	0	2383959..2385338	-	459	21283966	-	MW2237	-	hypothetical protein
2238	 33.89	0	2385618..2385974	+	118	21283967	-	MW2238	-	hypothetical protein
2239	 29.03	-1	2385971..2386156	+	61	21283968	-	MW2239	-	hypothetical protein
2240	 32.29	0	2386252..2386443	-	63	21283969	-	MW2240	-	hypothetical protein
2241	 33.18	0	2386454..2387089	-	211	21283970	-	MW2241	-	hypothetical protein
2242	 34.10	0	2387164..2388081	-	305	21283971	-	MW2242	-	hypothetical protein
2243	 29.76	0	2388349..2388879	+	176	21283972	-	MW2243	-	hypothetical protein
2244	 35.70	0	2388945..2390549	-	534	21283973	glvC	MW2244	-	PTS system arbutin-like IIBC component
2245	 29.93	0	2390879..2391643	+	254	21283974	-	MW2245	-	hypothetical protein
2246	 33.93	0	2391701..2392207	-	168	21283975	-	MW2246	-	hypothetical protein
2247	 35.43	0	2392374..2393753	-	459	21283976	-	MW2247	-	hypothetical protein
2248	 28.25	-1	2393912..2394481	-	189	21283977	-	MW2248	-	hypothetical protein
2249	 39.00	+1	2394968..2395849	-	293	21283978	-	MW2249	-	hypothetical protein
2250	 37.08	+1	2395960..2397081	-	373	21283979	-	MW2250	-	hypothetical protein
2251	 36.24	0	2397357..2398595	-	412	21283980	hutI	MW2251	-	imidazolonepropionase
2252	 39.53	+1	2398595..2400256	-	553	21283981	hutU	MW2252	-	urocanate hydratase
2253	 31.30	0	2400416..2401300	+	294	21283982	-	MW2253	-	hypothetical protein
2254	 36.54	+1	2401793..2402728	-	311	21283983	-	MW2254	-	formimidoylglutamase
2255	 33.57	0	2403018..2404277	+	419	21283984	-	MW2255	-	hypothetical protein
2256	 33.48	0	2404343..2405029	-	228	21283985	-	MW2256	-	hypothetical protein
2257	 33.64	0	2405203..2405856	+	217	21283986	-	MW2257	-	hypothetical protein
2258	 31.57	0	2406092..2407111	-	339	21283987	-	MW2258	-	hypothetical protein
2259	 38.53	+1	2407141..2407467	-	108	21283988	-	MW2259	-	hypothetical protein
2260	 31.31	0	2407685..2408917	-	410	21283989	-	MW2260	-	hypothetical protein
2261	 34.44	0	2408910..2409809	-	299	21283990	-	MW2261	-	hypothetical protein
2262	 30.92	0	2410040..2410660	-	206	21283991	-	MW2263	-	hypothetical protein
2263	 26.83	-1	2410652..2410774	+	40	21283992	-	MW2262	-	hypothetical protein
2264	 26.52	-1	2410840..2410971	+	43	21283993	-	MW2264	-	hypothetical protein
2265	 37.93	+1	2411059..2411667	+	202	21283994	-	MW2265	-	hypothetical protein
2266	 32.51	0	2412004..2413212	+	402	21283995	-	MW2266	-	hypothetical protein
2267	 37.71	+1	2413260..2414309	-	349	21283996	fni	MW2267	-	isopentenyl pyrophosphate isomerase
2268	 29.54	0	2414340..2415287	-	315	21283997	-	MW2268	-	hypothetical protein
2269	 31.91	0	2415384..2415875	+	163	21283998	-	MW2269	-	hypothetical protein
2270	 31.67	0	2415872..2416291	+	139	21283999	-	MW2270	-	hypothetical protein
2271	 32.90	0	2416399..2417319	-	306	21284000	-	MW2271	-	hypothetical protein
2272	 30.83	0	2417527..2418165	+	212	21284001	-	MW2272	-	hypothetical protein
2273	 33.39	0	2418411..2420342	-	643	21284002	-	MW2273	-	hypothetical protein
2274	 33.18	0	2420355..2421002	-	215	21284003	-	MW2274	-	hypothetical protein
2275	 28.99	-1	2421123..2421674	+	183	21284004	-	MW2275	-	hypothetical protein
2276	 33.58	0	2421904..2423112	-	402	21284005	tcaB	MW2276	-	TcaB protein
2277	 31.45	0	2423381..2424763	-	460	21284006	tcaA	MW2277	-	TcaA protein
2278	 28.73	-1	2425003..2425458	-	151	21284007	tcaR	MW2278	-	TcaR transcription regulator
2279	 30.96	0	2425653..2426621	+	322	21284008	-	MW2279	-	hypothetical protein
2280	 35.29	0	2426852..2427517	-	221	21284009	-	MW2280	-	hypothetical protein
2281	 30.40	0	2427517..2428572	-	351	21284010	-	MW2281	-	hypothetical protein
2282	 35.56	0	2428708..2429382	+	224	21284011	-	MW2282	-	hypothetical protein
2283	 31.22	0	2429375..2430748	+	457	21284012	-	MW2283	-	hypothetical protein
2284	 28.38	-1	2430911..2431354	+	147	21284013	-	MW2284	-	hypothetical protein
2285	 30.92	0	2431351..2431806	+	151	21284014	-	MW2285	-	hypothetical protein
2286	 35.94	0	2431872..2433407	-	511	21284015	-	MW2286	-	malate:quinone oxidoreductase
2287	 32.27	0	2433731..2435329	-	532	21284016	-	MW2287	-	hypothetical protein
2288	 32.74	0	2435646..2437319	+	557	21284017	-	MW2288	-	hypothetical protein
2289	 30.24	0	2437473..2438087	-	204	21284018	-	MW2289	-	hypothetical protein
2290	 31.40	0	2438401..2438916	-	171	21284019	-	MW2290	-	hypothetical protein
2291	 36.62	+1	2439107..2440111	+	334	21284020	-	MW2291	-	hypothetical protein
2292	 28.29	-1	2440354..2441601	+	415	21284021	-	MW2292	-	hypothetical protein
2293	 36.57	+1	2441877..2442278	-	133	21284022	-	MW2293	-	hypothetical protein
2294	 35.17	0	2442314..2443348	-	344	21284023	-	MW2294	-	hypothetical protein
2295	 30.79	0	2443580..2444011	-	143	21284024	-	MW2295	-	hypothetical protein
2296	 31.85	0	2444218..2445495	-	425	21284025	-	MW2296	-	hypothetical protein
2297	 30.93	0	2445656..2446279	+	207	21284026	-	MW2297	-	hypothetical protein
2298	 29.84	0	2446325..2447269	+	314	21284027	-	MW2298	-	hypothetical protein
2299	 35.27	0	2447354..2448796	-	480	21284028	scrA	MW2299	-	PTS system sucrose-specific IIBC component
2300	 30.73	0	2448979..2449362	+	127	21284029	-	MW2300	-	hypothetical protein
2301	 28.54	-1	2450850..2452955	+	701	21284030	-	MW2301	-	hypothetical protein
2302	 31.68	0	2453026..2453448	+	140	21284031	-	MW2302	-	hypothetical protein
2303	 28.01	-1	2453713..2454069	+	118	21284032	-	MW2303	-	hypothetical protein
2304	 33.10	0	2454279..2455556	-	425	21284033	gltT	MW2304	-	proton/sodium-glutamate symport protein
2305	 27.05	-1	2455738..2456103	-	121	21284034	-	MW2305	-	hypothetical protein
2306	 28.19	-1	2456501..2456947	+	148	21284035	-	MW2306	-	hypothetical protein
2307	 29.79	0	2457169..2457591	+	140	21284036	-	MW2307	-	hypothetical protein
2308	 34.27	0	2457698..2458867	-	389	21284037	narK	MW2308	-	nitrite extrusion protein
2309	 20.83	-2	2458938..2459057	+	39	21284038	-	MW2309	-	hypothetical protein
2310	 29.33	-1	2459236..2459760	+	174	21284039	-	MW2310	-	hypothetical protein
2311	 32.79	0	2459786..2460151	+	121	21284040	-	MW2311	-	hypothetical protein
2312	 27.94	-1	2460130..2460870	+	246	21284041	-	MW2312	-	hypothetical protein
2313	 33.94	0	2461128..2461781	-	217	21284042	-	MW2313	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.