IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.85   STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1962	 26.99	-1	2108781..2110073	+	430	21283691	agrC	MW1962	-	AgrC
1963	 31.10	0	2110092..2110808	+	238	21283692	agrA	MW1963	-	accessory gene regulator A
1964	 34.79	0	2111177..2112136	-	319	21283693	-	MW1964	-	hypothetical protein
1965	 34.01	0	2112133..2113617	-	494	21283694	scrB	MW1965	-	sucrose-6-phosphate hydrolase
1966	 32.60	0	2113766..2114716	-	316	21283695	scrR	MW1966	-	sucrose operon repressor
1967	 33.01	0	2114899..2116149	-	416	21283696	nrgA	MW1967	-	probabale ammonium transporter
1968	 34.67	0	2116357..2116581	-	74	21283697	-	MW1968	-	hypothetical protein
1969	 35.74	0	2116641..2117720	-	359	21283698	-	MW1969	-	hypothetical protein
1970	 33.96	0	2118024..2118659	-	211	21283699	-	MW1970	-	redox-sensing transcriptional repressor Rex
1971	 32.04	0	2118912..2120840	+	642	21283700	vga	MW1971	-	ABC transporter ATP-binding protein
1972	 30.42	0	2121202..2122812	+	536	21283701	-	MW1972	-	hypothetical protein
1973	 37.43	+1	2122914..2123939	-	341	21283702	-	MW1973	-	O-sialoglycoprotein endopeptidase
1974	 31.83	0	2123932..2124396	-	154	21283703	-	MW1974	-	hypothetical protein
1975	 34.78	0	2124369..2125058	-	229	21283704	-	MW1975	-	hypothetical protein
1976	 30.30	0	2125012..2125473	-	153	21283705	-	MW1976	-	hypothetical protein
1977	 40.44	+2	2125984..2127672	+	562	21283706	ilvD	MW1977	-	dihydroxy-acid dehydratase
1978	 36.61	+1	2127700..2129469	+	589	21283707	ilvB	MW1978	-	acetolactate synthase large subunit
1979	 30.98	0	2129469..2129723	+	84	21283708	-	MW1979	-	acetolactate synthase 1 regulatory subunit
1980	 35.02	0	2129860..2130864	+	334	21283709	ilvC	MW1980	-	ketol-acid reductoisomerase
1981	 36.41	+1	2130894..2132423	+	509	21283710	leuA	MW1981	-	2-isopropylmalate synthase
1982	 35.53	0	2132426..2133472	+	348	21283711	leuB	MW1982	-	3-isopropylmalate dehydrogenase
1983	 38.07	+1	2133486..2134856	+	456	21283712	leuC	MW1983	-	isopropylmalate isomerase large subunit
1984	 33.16	0	2134857..2135429	+	190	21283713	leuD	MW1984	-	isopropylmalate isomerase small subunit
1985	 31.91	0	2135444..2136712	+	422	21283714	ilvA	MW1985	-	threonine dehydratase
1986	 33.33	0	2143331..2143786	-	151	21283715	-	MW1986	-	hypothetical protein
1987	 33.47	0	2143779..2145929	-	716	21283716	-	MW1987	-	hypothetical protein
1988	 35.15	0	2146362..2147132	-	256	21283717	sigB	MW1988	-	RNA polymerase sigma factor SigB
1989	 32.29	0	2147107..2147586	-	159	21283718	rsbW	MW1989	-	serine-protein kinase RsbW
1990	 31.80	0	2147588..2147914	-	108	21283719	rsbV	MW1990	-	anti-sigmaB factor antagonist
1991	 31.44	0	2148033..2149034	-	333	21283720	rsbU	MW1991	-	sigmaB regulation protein RsbU
1992	 33.33	0	2149382..2149744	-	120	21283721	-	MW1992	-	hypothetical protein
1993	 33.33	0	2149741..2149911	-	56	21283722	-	MW1993	-	hypothetical protein
1994	 36.12	0	2149996..2151144	-	382	21283723	alr	MW1994	-	alanine racemase
1995	 35.56	0	2151210..2151569	-	119	21283724	dpj	MW1995	-	holo-ACP synthase
1996	 33.54	0	2151573..2152064	-	163	21283725	-	MW1996	-	hypothetical protein
1997	 31.76	0	2152051..2153634	-	527	21283726	-	MW1997	-	hypothetical protein
1998	 30.21	0	2153627..2154106	-	159	21283727	-	MW1998	-	hypothetical protein
1999	 35.65	0	2154315..2154875	-	186	21283728	kdpC	MW1999	-	potassium-transporting ATPase C chain
2000	 34.57	0	2154895..2156922	-	675	21283729	kdpB	MW2000	-	potassium-transporting ATPase B chain
2001	 32.62	0	2156941..2158617	-	558	21283730	kdpA	MW2001	-	potassium-transporting ATPase subunit A
2002	 31.94	0	2158889..2161546	+	885	21283731	kdpD	MW2002	-	sensor protein KdpD
2003	 32.61	0	2161546..2162241	+	231	21283732	kdpE	MW2003	-	KDP operon transcriptional regulatory protein KdpE
2004	 36.49	+1	2162610..2164130	-	506	21283733	-	MW2004	-	hypothetical protein
2005	 33.26	0	2164647..2166005	-	452	21283734	murF	MW2005	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase
2006	 33.71	0	2166020..2167090	-	356	21283735	ddl	MW2006	-	D-alanyl-alanine synthetase A
2007	 32.92	0	2167408..2168610	+	400	21283736	-	MW2007	-	hypothetical protein
2008	 26.81	-1	2168873..2169010	-	45	21283737	-	MW2008	-	hypothetical protein
2009	 30.00	0	2169138..2169347	-	69	21283738	-	MW2009	-	hypothetical protein
2010	 33.67	0	2169359..2169652	-	97	21283739	-	MW2010	-	hypothetical protein
2011	 32.46	0	2169818..2171302	+	494	21283740	-	MW2011	-	hypothetical protein
2012	 34.26	0	2171330..2171977	+	215	21283741	-	MW2012	-	hypothetical protein
2013	 33.79	0	2172591..2173463	-	290	21283742	-	MW2013	-	lipoprotein precursor
2014	 35.36	0	2173549..2174190	-	213	21283743	thiE	MW2014	-	thiamin phosphate synthase (chain B)
2015	 34.96	0	2174183..2174983	-	266	21283744	thiM	MW2015	-	hydroxyethylthiazole kinase
2016	 35.74	0	2174967..2175797	-	276	21283745	thiD	MW2016	-	phosphomethylpyrimidine kinase
2017	 32.90	0	2175790..2176479	-	229	21283746	-	MW2017	-	hypothetical protein
2018	 42.11	+2	2176579..2176635	-	18	21283747	-	MW2018	-	hypothetical protein
2019	 34.15	0	2176742..2176987	+	81	21283748	-	MW2019	-	hypothetical protein
2020	 39.08	+1	2177003..2177698	-	231	21283749	-	MW2020	-	hypothetical protein
2021	 30.05	0	2178087..2178482	-	131	21283750	-	MW2021	-	hypothetical protein
2022	 30.61	0	2178676..2179116	+	146	21283751	-	MW2022	-	hypothetical protein
2023	 33.56	0	2179174..2179614	-	146	21283752	-	MW2023	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
2024	 36.18	0	2179648..2180913	-	421	21283753	murA	MW2024	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2025	 28.63	-1	2181024..2181257	-	77	21283754	-	MW2025	-	hypothetical protein
2026	 36.54	+1	2181819..2182223	-	134	21283755	atpC	MW2026	-	F0F1 ATP synthase subunit epsilon
2027	 38.64	+1	2182243..2183655	-	470	21283756	atpD	MW2027	-	F0F1 ATP synthase subunit beta
2028	 34.95	0	2183677..2184543	-	288	21283757	atpG	MW2028	-	F0F1 ATP synthase subunit gamma
2029	 36.85	+1	2184574..2186082	-	502	21283758	atpA	MW2029	-	F0F1 ATP synthase subunit alpha
2030	 30.00	0	2186104..2186643	-	179	21283759	atpH	MW2030	-	F0F1 ATP synthase subunit delta
2031	 36.02	0	2186643..2187164	-	173	21283760	atpF	MW2031	-	F0F1 ATP synthase subunit B
2032	 40.38	+2	2187361..2187573	-	70	21283761	atpE	MW2032	-	F0F1 ATP synthase subunit C
2033	 35.67	0	2187616..2188344	-	242	21283762	atpB	MW2033	-	F0F1 ATP synthase subunit A
2034	 30.23	0	2188365..2188718	-	117	21283763	-	MW2034	-	hypothetical protein
2035	 34.75	0	2188885..2190015	-	376	21283764	mnaA	MW2035	-	UDP-GlcNAc 2-epimerase
2036	 36.67	+1	2190036..2190665	-	209	21283765	upp	MW2036	-	uracil phosphoribosyltransferase
2037	 36.88	+1	2190693..2191931	-	412	21283766	glyA	MW2037	-	serine hydroxymethyltransferase
2038	 36.95	+1	2191958..2192482	-	174	21283767	-	MW2038	-	hypothetical protein
2039	 32.86	0	2192589..2193008	-	139	21283768	-	MW2039	-	hypothetical protein
2040	 35.24	0	2193005..2194051	-	348	21283769	-	MW2040	-	hypothetical protein
2041	 34.41	0	2194135..2194971	-	278	21283770	-	MW2041	-	hypothetical protein
2042	 35.19	0	2194958..2196034	-	358	21283771	prfA	MW2042	-	peptide chain release factor 1
2043	 37.00	+1	2196035..2196634	-	199	21283772	tdk	MW2043	-	thymidine kinase
2044	 35.69	0	2196981..2197235	-	84	21283773	rpmE2	MW2044	-	50S ribosomal protein L31 type B
2045	 35.76	0	2197353..2198669	-	438	21283774	rho	MW2045	-	transcription termination factor Rho
2046	 36.34	+1	2198916..2200343	-	475	21283775	-	MW2046	-	hypothetical protein
2047	 35.40	0	2200581..2200919	-	112	21283776	-	MW2047	-	hypothetical protein
2048	 34.92	0	2201005..2202264	-	419	21283777	murZ	MW2048	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2049	 36.70	+1	2202730..2203590	-	286	21283778	fbaA	MW2049	-	fructose-bisphosphate aldolase
2050	 31.42	0	2203808..2204329	+	173	21283779	-	MW2050	-	hypothetical protein
2051	 33.89	0	2204438..2206048	-	536	21283780	ctrA	MW2051	-	CTP synthetase
2052	 32.58	0	2206384..2206914	-	176	21283781	rpoE	MW2052	-	DNA-directed RNA polymerase subunit delta
2053	 32.75	0	2207026..2207886	-	286	21283782	-	MW2053	-	hypothetical protein
2054	 37.31	+1	2208310..2209113	+	267	21283783	-	MW2054	-	pantothenate kinase
2055	 32.29	0	2209243..2209914	-	223	21283784	-	MW2055	-	hypothetical protein
2056	 34.25	0	2210313..2211506	-	397	21283785	-	MW2056	-	hypothetical protein
2057	 37.13	+1	2211506..2212690	-	394	21283786	hmrA	MW2057	-	putative amidase
2058	 34.18	0	2213001..2213471	+	156	21283787	luxS	MW2058	-	S-ribosylhomocysteinase
2059	 31.62	0	2213623..2213973	-	116	21283788	-	MW2059	-	hypothetical protein
2060	 35.94	0	2213987..2215288	-	433	161485720	pdp	MW2060	-	pyrimidine-nucleoside phosphorylase
2061	 40.72	+2	2215569..2216231	-	220	21283790	-	MW2061	-	deoxyribose-phosphate aldolase
32.85	MEAN

3.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.