IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1881	 31.34	0	2046033..2046233	+	66	21283610	hlb	MW1881	-	truncated beta-hemolysin
1882	 26.67	-1	2046605..2046784	+	59	21283611	-	MW1882	-	hypothetical protein
1883	 25.24	-2	2046808..2047116	+	102	21283612	-	MW1883	-	hypothetical protein
1884	 28.77	-1	2047408..2047758	-	116	21283613	-	MW1884	-	hypothetical protein
1885	 32.11	0	2049256..2049747	-	163	21283614	sak	MW1885	-	staphylokinase precursor
1886	 35.05	0	2049938..2050693	-	251	21283615	-	MW1886	-	lytic enzyme
1887	 32.55	0	2050705..2050959	-	84	21283616	-	MW1887	-	hypothetical protein
1888	 31.11	0	2051171..2051305	-	44	21283617	-	MW1888	-	hypothetical protein
1889	 31.14	0	2051456..2052229	-	257	21283618	sea	MW1889	-	staphylococcal enterotoxin A precursor
1890	 33.33	0	2052602..2052976	-	124	21283619	-	MW1890	-	hypothetical protein
1891	 31.21	0	2053032..2053361	-	109	21283620	-	MW1891	-	hypothetical protein
1892	 30.72	0	2053365..2053517	-	50	21283621	-	MW1892	-	hypothetical protein
1893	 34.66	0	2053510..2057292	-	1260	21283622	-	MW1893	-	hypothetical protein
1894	 34.74	0	2057308..2058798	-	496	21283623	-	MW1894	-	hypothetical protein
1895	 37.72	+1	2058798..2063447	-	1549	21283624	-	MW1895	-	hypothetical protein
1896	 30.95	0	2063503..2063586	-	27	21283625	-	MW1896	-	hypothetical protein
1897	 32.66	0	2063685..2064131	-	148	21283626	-	MW1897	-	hypothetical protein
1898	 37.95	+1	2064196..2065149	-	317	21283627	-	MW1898	-	hypothetical protein
1899	 32.81	0	2065150..2065530	-	126	21283628	-	MW1899	-	hypothetical protein
1900	 33.86	0	2065527..2065904	-	125	21283629	-	MW1900	-	hypothetical protein
1901	 32.44	0	2065904..2066239	-	111	21283630	-	MW1901	-	hypothetical protein
1902	 33.63	0	2066226..2066558	-	110	21283631	-	MW1902	-	hypothetical protein
1903	 33.33	0	2066567..2066725	-	52	21283632	-	MW1903	-	hypothetical protein
1904	 33.25	0	2066761..2068008	-	415	21283633	-	MW1904	-	capsid protein
1905	 35.56	0	2068096..2068680	-	194	21283634	-	MW1905	-	hypothetical protein
1906	 33.65	0	2068673..2069923	-	416	21283635	-	MW1906	-	portal protein
1907	 27.86	-1	2069929..2070129	-	66	21283636	-	MW1907	-	hypothetical protein
1908	 34.40	0	2070143..2071837	-	564	21283637	-	MW1908	-	hypothetical protein
1909	 33.33	0	2071840..2072307	-	155	21283638	-	MW1909	-	hypothetical protein
1910	 31.64	0	2072436..2072789	-	117	21283639	-	MW1910	-	hypothetical protein
1911	 32.01	0	2072796..2073248	-	150	21283640	-	MW1911	-	hypothetical protein
1912	 32.06	0	2073363..2073833	-	156	21283641	-	MW1912	-	hypothetical protein
1913	 29.41	-1	2073856..2074059	-	67	21283642	-	MW1913	-	hypothetical protein
1914	 23.35	-2	2074056..2074706	-	216	21283643	-	MW1914	-	hypothetical protein
1915	 23.53	-2	2074713..2074865	-	50	21283644	-	MW1915	-	hypothetical protein
1916	 37.33	+1	2074865..2075014	-	49	21283645	-	MW1916	-	hypothetical protein
1917	 38.41	+1	2075028..2075342	-	104	21283646	-	MW1917	-	hypothetical protein
1918	 35.06	0	2075355..2075759	-	134	21283647	-	MW1918	-	hypothetical protein
1919	 29.22	-1	2075768..2075986	-	72	21283648	-	MW1919	-	hypothetical protein
1920	 34.12	0	2075993..2076886	-	297	21283649	-	MW1920	-	hypothetical protein
1921	 36.73	+1	2076916..2077386	-	156	21283650	-	MW1921	-	single-strand DNA-binding protein
1922	 34.77	0	2077387..2077872	-	161	21283651	-	MW1922	-	hypothetical protein
1923	 33.77	0	2078085..2079005	-	306	21283652	-	MW1923	-	hypothetical protein
1924	 30.56	0	2079007..2080956	-	649	21283653	-	MW1924	-	hypothetical protein
1925	 32.95	0	2080959..2081222	-	87	21283654	-	MW1925	-	hypothetical protein
1926	 30.65	0	2081231..2081491	-	86	21283655	-	MW1926	-	hypothetical protein
1927	 35.19	0	2081584..2081745	-	53	21283656	-	MW1927	-	hypothetical protein
1928	 32.40	0	2081742..2082062	-	106	21283657	-	MW1928	-	hypothetical protein
1929	 27.99	-1	2082118..2082753	+	211	21283658	-	MW1929	-	hypothetical protein
1930	 29.79	0	2082768..2082908	-	46	21283659	-	MW1930	-	hypothetical protein
1931	 31.82	0	2082939..2083136	-	65	21283660	-	MW1931	-	hypothetical protein
1932	 34.27	0	2083152..2083901	-	249	21283661	-	MW1932	-	phage anti repressor
1933	 31.85	0	2083958..2084497	+	179	21283662	-	MW1933	-	hypothetical protein
1934	 31.03	0	2084521..2084781	-	86	21283663	-	MW1934	-	hypothetical protein
1935	 32.44	0	2084799..2085023	-	74	21283664	-	MW1935	-	hypothetical protein
1936	 32.30	0	2085182..2085952	+	256	21283665	-	MW1936	-	phage repressor
1937	 27.57	-1	2086148..2086876	+	242	21283666	seg2	MW1937	-	staphylococcal enterotoxin SeG
1938	 26.34	-1	2086900..2087628	+	242	21283667	sek2	MW1938	-	staphylococcal enterotoxin Sek
1939	 30.83	0	2087712..2088749	+	345	21283668	int	MW1939	-	integrase
1940	 33.70	0	2088806..2089630	+	274	21283669	hlb	MW1940	-	truncated beta-hemplysin
1941	 30.29	0	2089868..2090884	-	338	21283670	-	MW1941	-	hypothetical protein
1942	 29.82	0	2090906..2091958	-	350	21283671	-	MW1942	-	hypothetical protein
1943	 33.82	0	2092394..2093617	+	407	21283672	-	MW1943	-	succinyl-diaminopimelate desuccinylase
1944	 26.83	-1	2093989..2094834	-	281	21283673	-	MW1944	-	hypothetical protein
1945	 27.63	-1	2094896..2095807	-	303	21283674	-	MW1945	-	ferric hydroxamate receptor 1
1946	 28.75	-1	2095968..2097275	+	435	21283675	-	MW1946	-	hypothetical protein
1947	 26.80	-1	2098129..2098572	-	147	21283676	-	MW1947	-	hypothetical protein
1948	 25.05	-2	2098678..2099196	-	172	21283677	-	MW1948	-	hypothetical protein
1949	 34.52	0	2099432..2100022	-	196	21283678	-	MW1949	-	hypothetical protein
1950	 30.09	0	2100019..2100234	-	71	21283679	-	MW1950	-	hypothetical protein
1951	 31.32	0	2100364..2100711	+	115	21283680	int	MW1951	-	hypothetical protein
1952	 34.46	0	2100572..2100838	+	88	21283681	-	MW1952	-	hypothetical protein
1953	 37.91	+1	2100933..2102549	-	538	21283682	groEL	MW1953	-	chaperonin GroEL
1954	 34.04	0	2102625..2102909	-	94	21283683	groES	MW1954	-	co-chaperonin GroES
1955	 28.90	-1	2103084..2103827	+	247	21283684	-	MW1955	-	hypothetical protein
1956	 36.51	+1	2103852..2105111	-	419	21283685	-	MW1956	-	hypothetical protein
1957	 31.10	0	2105308..2105934	+	208	21283686	-	MW1957	-	hypothetical protein
1958	 31.93	0	2106295..2107080	+	261	21283687	-	MW1958	-	hypothetical protein
1959	 26.67	-1	2107679..2107813	-	44	21283688	hld	MW1959	-	delta-hemolysin
1960	 28.55	-1	2108049..2108612	+	187	21283689	agrB	MW1960	-	accessory gene regulator B
1961	 31.21	0	2108616..2108756	+	46	21283690	agrD	MW1961	-	AgrD
1962	 26.99	-1	2108781..2110073	+	430	21283691	agrC	MW1962	-	AgrC
1963	 31.10	0	2110092..2110808	+	238	21283692	agrA	MW1963	-	accessory gene regulator A
1964	 34.79	0	2111177..2112136	-	319	21283693	-	MW1964	-	hypothetical protein
1965	 34.01	0	2112133..2113617	-	494	21283694	scrB	MW1965	-	sucrose-6-phosphate hydrolase
1966	 32.60	0	2113766..2114716	-	316	21283695	scrR	MW1966	-	sucrose operon repressor
1967	 33.01	0	2114899..2116149	-	416	21283696	nrgA	MW1967	-	probabale ammonium transporter
1968	 34.67	0	2116357..2116581	-	74	21283697	-	MW1968	-	hypothetical protein
1969	 35.74	0	2116641..2117720	-	359	21283698	-	MW1969	-	hypothetical protein
1970	 33.96	0	2118024..2118659	-	211	21283699	-	MW1970	-	redox-sensing transcriptional repressor Rex
1971	 32.04	0	2118912..2120840	+	642	21283700	vga	MW1971	-	ABC transporter ATP-binding protein
1972	 30.42	0	2121202..2122812	+	536	21283701	-	MW1972	-	hypothetical protein
1973	 37.43	+1	2122914..2123939	-	341	21283702	-	MW1973	-	O-sialoglycoprotein endopeptidase
1974	 31.83	0	2123932..2124396	-	154	21283703	-	MW1974	-	hypothetical protein
1975	 34.78	0	2124369..2125058	-	229	21283704	-	MW1975	-	hypothetical protein
1976	 30.30	0	2125012..2125473	-	153	21283705	-	MW1976	-	hypothetical protein
1977	 40.44	+2	2125984..2127672	+	562	21283706	ilvD	MW1977	-	dihydroxy-acid dehydratase
1978	 36.61	+1	2127700..2129469	+	589	21283707	ilvB	MW1978	-	acetolactate synthase large subunit
1979	 30.98	0	2129469..2129723	+	84	21283708	-	MW1979	-	acetolactate synthase 1 regulatory subunit
1980	 35.02	0	2129860..2130864	+	334	21283709	ilvC	MW1980	-	ketol-acid reductoisomerase
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.