IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1690	 34.52	0	1835911..1836753	-	280	21283419	-	MW1690	-	hypothetical protein
1691	 31.78	0	1837223..1837867	-	214	21283420	-	MW1691	-	hypothetical protein
1692	 34.85	0	1837882..1838673	-	263	21283421	-	MW1692	-	hypothetical protein
1693	 32.98	0	1839224..1840072	-	282	21283422	-	MW1693	-	D-alanine aminotransferase
1694	 35.04	0	1840076..1841485	-	469	21283423	-	MW1694	-	dipeptidase PepV
1695	 30.97	0	1842177..1842599	-	140	21283424	-	MW1695	-	hypothetical protein
1696	 29.60	0	1842616..1843311	-	231	21283425	-	MW1696	-	hypothetical protein
1697	 32.31	0	1843308..1844969	-	553	21283426	-	MW1697	-	hypothetical protein
1698	 35.62	0	1845376..1846644	+	422	21283427	-	MW1698	-	hypothetical protein
1699	 35.16	0	1846761..1853321	-	2186	21283428	-	MW1699	-	hypothetical protein
1700	 33.65	0	1853647..1853958	-	103	21283429	-	MW1700	-	hypothetical protein
1701	 34.32	0	1853980..1856403	-	807	21283430	leuS	MW1701	-	leucyl-tRNA synthetase
1702	 34.94	0	1856691..1857872	-	393	21283431	-	MW1702	-	hypothetical protein
1703	 36.79	+1	1857982..1858935	+	317	21283432	-	MW1703	-	hypothetical protein
1704	 32.27	0	1858932..1859495	+	187	21283433	-	MW1704	-	hypothetical protein
1705	 30.95	0	1859615..1860076	-	153	21283434	rot	MW1705	-	repressor of toxins Rot
1706	 32.61	0	1860590..1861417	-	275	21283435	-	MW1706	-	hypothetical protein
1707	 32.73	0	1861651..1862652	+	333	21283436	-	MW1707	-	hypothetical protein
1708	 33.33	0	1862774..1863238	-	154	21283437	ribH	MW1708	-	6,7-dimethyl-8-ribityllumazine synthase
1709	 34.01	0	1863251..1864432	-	393	21283438	ribA	MW1709	-	riboflavin biosynthesis protein
1710	 33.18	0	1864443..1865075	-	210	21283439	ribB	MW1710	-	riboflavin synthase subunit alpha
1711	 34.77	0	1865082..1866125	-	347	21283440	ribD	MW1711	-	riboflavin specific deaminase
1712	 31.34	0	1866606..1868108	-	500	21283441	-	MW1712	-	hypothetical protein
1713	 31.11	0	1868631..1868945	+	104	21283442	-	MW1713	-	hypothetical protein
1714	 32.02	0	1868945..1870237	+	430	21283443	-	MW1714	-	hypothetical protein
1715	 30.99	0	1870324..1871178	-	284	21283444	-	MW1715	-	hypothetical protein
1716	 28.44	-1	1871454..1871678	-	74	21283445	-	MW1716	-	hypothetical protein
1717	 28.03	-1	1871877..1872347	+	156	21283446	-	MW1717	-	hypothetical protein
1718	 29.73	0	1872460..1872903	+	147	21283447	-	MW1718	-	hypothetical protein
1719	 27.03	-1	1872890..1873333	-	147	21283448	-	MW1719	-	hypothetical protein
1720	 28.46	-1	1873629..1874264	+	211	21283449	-	MW1720	-	hypothetical protein
1721	 34.59	0	1874704..1875417	-	237	21283450	-	MW1721	-	putative translaldolase
1722	 25.41	-2	1875677..1875979	+	100	21283451	-	MW1722	-	hypothetical protein
1723	 34.23	0	1876157..1876600	+	147	21283452	-	MW1723	-	hypothetical protein
1724	 31.07	0	1876597..1876950	+	117	21283453	-	MW1724	-	hypothetical protein
1725	 38.33	+1	1877142..1877321	+	59	21283454	-	MW1725	-	hypothetical protein
1726	 34.53	0	1877333..1878166	-	277	21283455	-	MW1726	-	hypothetical protein
1727	 30.37	0	1878378..1879289	-	303	21283456	-	MW1727	-	hypothetical protein
1728	 37.77	+1	1879411..1880604	-	397	21283457	metK	MW1728	-	S-adenosylmethionine synthetase
1729	 34.97	0	1880976..1882568	+	530	21283458	pckA	MW1729	-	phosphoenolpyruvate carboxykinase
1730	 40.11	+2	1882692..1882868	+	58	21283459	-	MW1730	-	hypothetical protein
1731	 38.78	+1	1882946..1883716	-	256	21283460	-	MW1731	-	hypothetical protein
1732	 35.21	0	1883697..1884176	-	159	21283461	-	MW1732	-	hypothetical protein
1733	 37.60	+1	1884236..1884493	+	85	21283462	-	MW1733	-	hypothetical protein
1734	 36.33	+1	1884490..1885491	-	333	21283463	menC	MW1734	-	o-succinylbenzoic acid synthetase
1735	 35.97	0	1885496..1886974	-	492	21283464	menE	MW1735	-	O-succinylbenzoic acid-CoA ligase
1736	 28.57	-1	1887133..1887615	-	160	21283465	-	MW1736	-	hypothetical protein
1737	 33.17	0	1887927..1888541	+	204	21283466	-	MW1737	-	hypothetical protein
1738	 34.94	0	1888622..1889617	+	331	21283467	-	MW1738	-	hypothetical protein
1739	 32.06	0	1889691..1890317	+	208	21283468	-	MW1739	-	hypothetical protein
1740	 30.41	0	1890358..1890699	+	113	21283469	-	MW1740	-	hypothetical protein
1741	 31.94	0	1890800..1891372	+	190	21283470	-	MW1741	-	hypothetical protein
1742	 27.14	-1	1891660..1892127	-	155	21283471	-	MW1742	-	hypothetical protein
1743	 20.34	-2	1892501..1892677	-	58	21283472	-	MW1743	-	hypothetical protein
1744	 33.85	0	1892688..1893071	-	127	21283473	-	MW1744	-	hypothetical protein
1745	 28.10	-1	1893263..1893472	-	69	21283474	tnp	MW1745	-	putative transposase
1746	 34.13	0	1893639..1893764	+	41	21283475	-	MW1746	-	hypothetical protein
1747	 31.94	0	1893675..1893818	-	47	21283476	-	MW1747	-	putative transposase
1748	 23.81	-2	1894688..1895065	-	125	21283477	-	MW1748	-	hypothetical protein
1749	 24.51	-2	1895586..1899698	-	1370	21283478	-	MW1749	-	hypothetical protein
1750	 30.25	0	1900548..1901747	-	399	21283479	hsdS	MW1750	-	specificity determinant HsdS
1751	 38.66	+1	1901740..1903296	-	518	21283480	hsdM	MW1751	-	hypothetical protein
1752	 33.33	0	1903659..1904378	-	239	21283481	splF	MW1752	-	serine protease SplF
1753	 32.78	0	1904499..1905218	-	239	21283482	splC	MW1753	-	serine protease SplC
1754	 33.06	0	1905276..1905998	-	240	21283483	splB	MW1754	-	serine protease SplB
1755	 32.34	0	1906123..1906830	-	235	21283484	splA	MW1755	-	serine protease SplA
1756	 29.22	-1	1907266..1907484	-	72	21283485	-	MW1756	-	hypothetical protein
1757	 31.75	0	1907794..1908360	+	188	21283486	-	MW1757	-	hypothetical protein
1758	 27.04	-1	1908834..1909532	-	232	21283487	bsaG	MW1758	-	hypothetical protein
1759	 28.61	-1	1909529..1910290	-	253	21283488	bsaE	MW1759	-	hypothetical protein
1760	 29.58	0	1910287..1910979	-	230	21283489	bsaF	MW1760	-	hypothetical protein
1761	 33.33	0	1911002..1912375	-	457	21283490	bsaP	MW1761	-	hypothetical protein
1762	 26.78	-1	1912385..1912903	-	172	21283491	bsaD	MW1762	-	hypothetical protein
1763	 28.76	-1	1912919..1914163	-	414	21283492	bsaC	MW1763	-	hypothetical protein
1764	 27.56	-1	1914156..1917149	-	997	21283493	bsaB	MW1764	-	hypothetical protein
1765	 35.42	0	1917214..1917357	-	47	21283494	bsaA2	MW1765	-	hypothetical protein
1766	 35.42	0	1918094..1918237	-	47	21283495	bsaA1	MW1766	-	hypothetical protein
1767	 31.81	0	1918479..1919462	-	327	21283496	lukD	MW1767	-	leukotoxin
1768	 32.69	0	1919464..1920399	-	311	21283497	lukE	MW1768	-	leukotoxin LukE
1769	 27.85	-1	1921296..1921751	+	151	21283498	-	MW1769	-	hypothetical protein
1770	 25.10	-2	1921764..1922552	+	262	21283499	-	MW1770	-	hypothetical protein
1771	 33.69	0	1925009..1925563	-	184	21283500	-	MW1771	-	hypothetical protein
1772	 35.19	0	1925885..1927285	-	466	21283501	hemY	MW1772	-	protoporphyrinogen oxidase
1773	 33.55	0	1927309..1928232	-	307	21283502	hemH	MW1773	-	ferrochelatase
1774	 34.78	0	1928290..1929327	-	345	21283503	hemE	MW1774	-	uroporphyrinogen decarboxylase
1775	 31.75	0	1929590..1930093	+	167	21283504	-	MW1775	-	signal transduction protein TRAP
1776	 29.74	0	1930217..1931440	-	407	21283505	-	MW1776	-	hypothetical protein
1777	 34.95	0	1931433..1932173	-	246	21283506	-	MW1777	-	hypothetical protein
1778	 30.26	0	1932307..1932729	+	140	21283507	hit	MW1778	-	Hit-like protein involved in cell-cycle regulation
1779	 36.61	+1	1932871..1933236	+	121	21283508	-	MW1779	-	hypothetical protein
1780	 26.57	-1	1933214..1933420	+	68	21283509	-	MW1780	-	hypothetical protein
1781	 24.37	-2	1933969..1934526	+	185	21283510	-	MW1781	-	hypothetical protein
1782	 30.94	0	1934731..1935693	+	320	21283511	prsA	MW1782	-	hypothetical protein
1783	 33.76	0	1935814..1936755	-	313	21283512	cbf1	MW1783	-	3'-5' exoribonuclease YhaM
1784	 30.75	0	1936752..1939688	-	978	21283513	-	MW1784	-	hypothetical protein
1785	 30.16	0	1939678..1940874	-	398	21283514	-	MW1785	-	hypothetical protein
1786	 32.17	0	1941756..1942100	-	114	21283515	-	MW1786	-	hypothetical protein
1787	 29.96	0	1942169..1943293	-	374	21283516	-	MW1787	-	hypothetical protein
1788	 31.83	0	1943472..1943936	-	154	21283517	-	MW1788	-	hypothetical protein
1789	 31.57	0	1944292..1944915	-	207	21283518	-	MW1789	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.