IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1581	 32.78	0	1708054..1709316	-	420	21283310	hisS	MW1581	-	histidyl-tRNA synthetase
1582	 33.56	0	1709777..1710652	-	291	21283311	-	MW1582	-	N-acetylmuramoyl-L-alanine amidase
1583	 32.01	0	1710649..1711101	-	150	21283312	-	MW1583	-	D-tyrosyl-tRNA deacylase
1584	 34.34	0	1711113..1713302	-	729	21283313	relA	MW1584	-	GTP pyrophosphokinase
1585	 34.49	0	1713730..1714248	-	172	21283314	apt	MW1585	-	adenine phosphoribosyltransferase
1586	 32.23	0	1714270..1716543	-	757	21283315	-	MW1586	-	hypothetical protein
1587	 32.59	0	1716746..1719025	-	759	21283316	secF	MW1587	-	bifunctional preprotein translocase subunit SecD/SecF
1588	 31.80	0	1719300..1719560	-	86	21283317	-	MW1588	-	hypothetical protein
1589	 35.70	0	1719579..1720718	-	379	21283318	tgt	MW1589	-	queuine tRNA-ribosyltransferase
1590	 33.53	0	1720741..1721766	-	341	21283319	queA	MW1590	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1591	 37.11	+1	1721768..1722772	-	334	21283320	ruvB	MW1591	-	Holliday junction DNA helicase B
1592	 33.50	0	1722804..1723406	-	200	21283321	ruvA	MW1592	-	holliday junction DNA helicase
1593	 29.19	-1	1723420..1723878	-	152	21283322	-	MW1593	-	hypothetical protein
1594	 36.50	+1	1723888..1725180	-	430	21283323	obgE	MW1594	-	GTPase ObgE
1595	 38.25	+1	1725665..1725949	-	94	21283324	rpmA	MW1595	-	50S ribosomal protein L27
1596	 30.85	0	1725961..1726161	-	66	21283325	-	MW1596	-	hypothetical protein
1597	 33.66	0	1726287..1726595	-	102	21283326	rplU	MW1597	-	50S ribosomal protein L21
1598	 28.63	-1	1726957..1727487	-	176	21283327	-	MW1598	-	hypothetical protein
1599	 30.84	0	1727487..1728329	-	280	21283328	-	MW1599	-	hypothetical protein
1600	 38.33	+1	1728528..1728647	-	39	21283329	-	MW1600	-	hypothetical protein
1601	 28.90	-1	1728721..1729194	-	157	21283330	-	MW1601	-	hypothetical protein
1602	 26.77	-1	1729354..1729551	+	65	21283331	-	MW1602	-	hypothetical protein
1603	 36.84	+1	1729668..1729952	-	94	21283332	-	MW1603	-	hypothetical protein
1604	 32.31	0	1730020..1730706	-	228	21283333	radC	MW1604	-	DNA repair protein RadC
1605	 28.39	-1	1730703..1731410	-	235	21283334	-	MW1605	-	hypothetical protein
1606	 32.78	0	1731680..1732951	-	423	21283335	folC	MW1606	-	folylpolyglutamate synthase
1607	 34.40	0	1732964..1735594	-	876	21283336	valS	MW1607	-	valyl-tRNA synthetase
1608	 32.98	0	1735997..1736557	+	186	21283337	tag	MW1608	-	DNA-3-methyladenine glycosidase
1609	 30.07	0	1736780..1737853	-	357	21283338	-	MW1609	-	hypothetical protein
1610	 35.56	0	1737887..1737976	-	29	21283339	-	MW1610	-	hypothetical protein
1611	 36.52	+1	1738049..1739335	-	428	21283340	hemL	MW1611	-	glutamate-1-semialdehyde aminotransferase
1612	 35.69	0	1739383..1740357	-	324	21283341	hemB	MW1612	-	delta-aminolevulinic acid dehydratase
1613	 30.49	0	1740360..1741028	-	222	21283342	hemD	MW1613	-	uroporphyrinogen III synthase
1614	 34.52	0	1741050..1741976	-	308	21283343	hemC	MW1614	-	porphobilinogen deaminase
1615	 28.31	-1	1742018..1742833	-	271	21283344	hemX	MW1615	-	hemA concentration negative effector hemX
1616	 33.85	0	1742855..1744201	-	448	21283345	hemA	MW1616	-	glutamyl-tRNA reductase
1617	 28.76	-1	1744418..1745008	-	196	21283346	-	MW1617	-	GTPase EngB
1618	 33.97	0	1745162..1746424	-	420	21283347	clpX	MW1618	-	ATP-dependent protease ATP-binding subunit
1619	 33.64	0	1746575..1747876	-	433	21283348	tig	MW1619	-	trigger factor
1620	 29.25	-1	1748039..1748968	-	309	21283349	-	MW1620	-	hypothetical protein
1621	 33.17	0	1748987..1749595	-	202	21283350	-	MW1621	-	hypothetical protein
1622	 36.41	+1	1749737..1750093	-	118	21283351	rplT	MW1622	-	50S ribosomal protein L20
1623	 34.83	0	1750140..1750340	-	66	21283352	rpmI	MW1623	-	50S ribosomal protein L35
1624	 34.66	0	1750369..1750896	-	175	21283353	infC	MW1624	-	translation initiation factor IF-3
1625	 34.67	0	1751125..1752618	-	497	21283354	lysP	MW1625	-	lysine-specific permease
1626	 35.14	0	1753044..1754981	-	645	21283355	thrS	MW1626	-	threonyl-tRNA synthetase
1627	 34.20	0	1755393..1756313	-	306	21283356	dnaI	MW1627	-	primosomal protein DnaI
1628	 32.76	0	1756313..1757713	-	466	21283357	dnaB	MW1628	-	chromosome replication initiation/membrane attachment protein
1629	 35.67	0	1757714..1758184	-	156	21283358	-	MW1629	-	transcriptional regulator NrdR
1630	 32.85	0	1758395..1759420	-	341	21283359	gapB	MW1630	-	glyceraldehyde 3-phosphate dehydrogenase 2
1631	 34.46	0	1759590..1760213	-	207	21283360	-	MW1631	-	dephospho-CoA kinase
1632	 32.07	0	1760229..1761101	-	290	21283361	-	MW1632	-	formamidopyrimidine-DNA glycosylase
1633	 32.16	0	1761117..1763747	-	876	21283362	polA	MW1633	-	DNA polymerase I
1634	 27.73	-1	1764041..1765039	-	332	21283363	-	MW1634	-	hypothetical protein
1635	 30.46	0	1765006..1765527	-	173	21283364	-	MW1635	-	hypothetical protein
1636	 31.17	0	1766026..1767690	-	554	21283365	phoR	MW1636	-	alkaline phosphatase synthesis sensor protein
1637	 33.90	0	1767687..1768391	-	234	21283366	phoP	MW1637	-	alkaline phosphatase synthesis transcriptional regulatory protein
1638	 34.83	0	1768781..1770049	-	422	21283367	citC	MW1638	-	isocitrate dehydrogenase
1639	 36.27	+1	1770098..1771219	-	373	21283368	citZ	MW1639	-	methylcitrate synthase
1640	 34.65	0	1771567..1772928	+	453	21283369	aapA	MW1640	-	D-serine/D-alanine/glycine transporter
1641	 34.64	0	1773276..1775033	-	585	21283370	pykA	MW1641	-	pyruvate kinase
1642	 37.23	+1	1775055..1775978	-	307	21283371	pfkA	MW1642	-	6-phosphofructokinase
1643	 34.39	0	1776292..1777236	-	314	21283372	accA	MW1643	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
1644	 34.27	0	1777236..1778093	-	285	21283373	-	MW1644	-	acetyl-CoA carboxylase subunit beta
1645	 35.77	0	1778288..1779517	-	409	21283374	-	MW1645	-	hypothetical protein
1646	 31.64	0	1779967..1783164	-	1065	21283375	dnaE	MW1646	-	DNA polymerase III alpha subunit
1647	 35.24	0	1783185..1784126	-	313	21283376	-	MW1647	-	hypothetical protein
1648	 33.26	0	1784580..1785878	-	432	21283377	-	MW1648	-	hypothetical protein
1649	 33.33	0	1786083..1786496	+	137	21283378	-	MW1649	-	hypothetical protein
1650	 33.91	0	1786801..1787319	-	172	21283379	-	MW1650	-	hypothetical protein
1651	 33.14	0	1787665..1788720	+	351	21283380	-	MW1651	-	hypothetical protein
1652	 35.92	0	1789036..1790154	-	372	21283381	ald	MW1652	-	alanine dehydrogenase
1653	 35.53	0	1790295..1790795	+	166	21283382	-	MW1653	-	hypothetical protein
1654	 35.08	0	1791041..1792243	-	400	21283383	ackA	MW1654	-	acetate kinase
1655	 31.96	0	1792331..1793278	-	315	21283384	-	MW1655	-	hypothetical protein
1656	 35.15	0	1793401..1793895	-	164	21283385	-	MW1656	-	hypothetical protein
1657	 32.68	0	1793993..1794763	-	256	21283386	-	MW1657	-	hypothetical protein
1658	 33.17	0	1794807..1796030	-	407	21283387	-	MW1658	-	hypothetical protein
1659	 31.75	0	1796030..1797169	-	379	21283388	-	MW1659	-	hypothetical protein
1660	 31.15	0	1797541..1799235	-	564	21283389	-	MW1660	-	septation ring formation regulator EzrA
1661	 35.91	0	1799372..1799836	+	154	21283390	-	MW1661	-	hypothetical protein
1662	 35.82	0	1800080..1800682	+	200	21283391	rpsD	MW1662	-	30S ribosomal protein S4
1663	 31.99	0	1800898..1801641	-	247	21283392	-	MW1663	-	hypothetical protein
1664	 34.90	0	1801721..1802167	+	148	21283393	-	MW1664	-	hypothetical protein
1665	 34.28	0	1802281..1803441	+	386	21283394	-	MW1665	-	hypothetical protein
1666	 34.58	0	1803428..1805032	+	534	21283395	serA	MW1666	-	D-3-phosphoglycerate dehydrogenase
1667	 31.65	0	1805182..1806312	-	376	21283396	-	MW1667	-	hypothetical protein
1668	 34.42	0	1806419..1807885	-	488	21283397	ptaA	MW1668	-	PTS system N-acetylglucosamine-specific IIABC component
1669	 31.23	0	1808013..1808630	-	205	21283398	-	MW1669	-	hypothetical protein
1670	 34.35	0	1808802..1810076	+	424	21283399	-	MW1670	-	hypothetical protein
1671	 33.41	0	1810170..1811432	-	420	21283400	tyrS	MW1671	-	tyrosyl-tRNA synthetase
1672	 30.24	0	1811814..1812719	+	301	21283401	sgtA	MW1672	-	transglycosylase
1673	 33.59	0	1812922..1815609	-	895	21283402	-	MW1674	-	hypothetical protein
1674	 22.92	-2	1815602..1815697	+	31	21283403	-	MW1673	-	hypothetical protein
1675	 36.09	0	1815943..1817610	-	555	21283404	fhs	MW1675	-	formate--tetrahydrofolate ligase
1676	 36.38	+1	1818050..1819756	-	568	21283405	acsA	MW1676	-	acetyl-CoA synthetase
1677	 34.12	0	1819925..1820557	+	210	21283406	acuA	MW1677	-	hypothetical protein
1678	 34.53	0	1820582..1821751	+	389	21283407	acuC	MW1678	-	acetoin utilization protein
1679	 33.13	0	1821849..1822838	-	329	21283408	ccpA	MW1679	-	catabolite control protein A
1680	 33.79	0	1823378..1824469	-	363	21283409	-	MW1680	-	bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.