IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1522	 32.69	0	1649946..1650413	-	155	21283251	-	MW1522	-	hypothetical protein
1523	 35.02	0	1650414..1651361	-	315	21283252	phoH	MW1523	-	hypothetical protein
1524	 32.33	0	1651665..1652363	-	232	21283253	-	MW1524	-	hypothetical protein
1525	 37.07	+1	1652380..1653369	-	329	21283254	-	MW1525	-	hypothetical protein
1526	 32.20	0	1653387..1654094	-	235	21283255	-	MW1526	-	hypothetical protein
1527	 32.20	0	1654314..1654490	-	58	21283256	rpsU	MW1527	-	30S ribosomal protein S21
1528	 34.74	0	1654783..1656129	-	448	21283257	-	MW1528	-	hypothetical protein
1529	 31.61	0	1656136..1656888	-	250	21283258	-	MW1529	-	hypothetical protein
1530	 34.29	0	1656890..1657828	-	312	21283259	-	MW1530	-	hypothetical protein
1531	 35.70	0	1657832..1658971	-	379	21283260	dnaJ	MW1531	-	DnaJ protein
1532	 35.57	0	1659107..1660939	-	610	21283261	dnaK	MW1532	-	DnaK protein
1533	 31.26	0	1661008..1661634	-	208	21283262	grpE	MW1533	-	heat shock protein GrpE
1534	 28.53	-1	1661666..1662643	-	325	21283263	hrcA	MW1534	-	heat-inducible transcriptional repressor
1535	 32.53	0	1662744..1663868	-	374	21283264	hemN	MW1535	-	coproporphyrinogen III oxidase
1536	 33.99	0	1664492..1666315	-	607	21283265	lepA	MW1536	-	GTP-binding protein LepA
1537	 31.35	0	1666661..1666912	+	83	21283266	rpsT	MW1537	-	30S ribosomal protein S20
1538	 26.77	-1	1666957..1667931	-	324	21283267	holA	MW1538	-	DNA polymerase III subunit delta
1539	 28.20	-1	1667988..1670189	-	733	21283268	-	MW1539	-	hypothetical protein
1540	 33.12	0	1670194..1670655	-	153	21283269	comEB	MW1540	-	late competence operon required for DNA binding and uptake comEB
1541	 29.50	0	1670747..1671424	-	225	21283270	-	MW1541	-	hypothetical protein
1542	 30.26	0	1671473..1672189	-	238	21283271	-	MW1542	-	hypothetical protein
1543	 33.05	0	1672192..1672545	-	117	21283272	-	MW1543	-	hypothetical protein
1544	 31.79	0	1672546..1673130	-	194	21283273	-	MW1544	-	hypothetical protein
1545	 34.21	0	1673120..1673689	-	189	21283274	-	MW1545	-	hypothetical protein
1546	 29.21	-1	1673692..1673982	-	96	21283275	-	MW1546	-	hypothetical protein
1547	 31.35	0	1673986..1674792	-	268	21283276	aroE	MW1547	-	shikimate 5-dehydrogenase
1548	 33.97	0	1674806..1675906	-	366	21283277	-	MW1548	-	GTP-binding protein YqeH
1549	 32.77	0	1675907..1676434	-	175	21283278	-	MW1549	-	hypothetical protein
1550	 33.19	0	1676454..1677140	-	228	21283279	pfS	MW1550	-	5'-methylthioadenosine nucleosidase/S-adenosylhomocysteine nucleosidase
1551	 27.78	-1	1677454..1677723	+	89	21283280	-	MW1551	-	hypothetical protein
1552	 28.41	-1	1677925..1678614	-	229	21283281	-	MW1552	-	hypothetical protein
1553	 26.70	-1	1679384..1680604	-	406	21283282	-	MW1553	-	hypothetical protein
1554	 33.41	0	1680891..1682120	-	409	21283283	-	MW1554	-	hypothetical protein
1555	 35.19	0	1682132..1682884	-	250	21283284	-	MW1555	-	hypothetical protein
1556	 35.83	0	1682884..1684245	-	453	21283285	-	MW1556	-	hypothetical protein
1557	 30.44	0	1684259..1684708	-	149	21283286	-	MW1557	-	hypothetical protein
1558	 34.32	0	1684710..1685720	-	336	21283287	-	MW1558	-	hypothetical protein
1559	 32.93	0	1685710..1686444	-	244	21283288	-	MW1559	-	hypothetical protein
1560	 33.33	0	1686770..1687246	-	158	21283289	greA	MW1560	-	transcription elongation factor
1561	 33.33	0	1687274..1687897	-	207	21283290	udk	MW1561	-	uridine kinase
1562	 35.38	0	1687897..1689165	-	422	21283291	-	MW1562	-	hypothetical protein
1563	 34.42	0	1689177..1690100	-	307	21283292	-	MW1563	-	hypothetical protein
1564	 29.11	-1	1690103..1690741	-	212	21283293	-	MW1564	-	hypothetical protein
1565	 32.69	0	1691026..1691334	-	102	21283294	-	MW1565	-	hypothetical protein
1566	 32.87	0	1691349..1691777	-	142	21283295	-	MW1566	-	hypothetical protein
1567	 30.27	0	1691781..1692041	-	86	21283296	-	MW1567	-	hypothetical protein
1568	 35.16	0	1692104..1694734	-	876	21283297	alaS	MW1568	-	alanyl-tRNA synthetase
1569	 32.77	0	1695077..1697554	-	825	21283298	-	MW1569	-	hypothetical protein
1570	 31.39	0	1697556..1698224	-	222	21283299	-	MW1570	-	hypothetical protein
1571	 35.03	0	1698805..1699923	-	372	21283300	-	MW1571	-	(5-methylaminomethyl-2-thiouridylate)-methyltran sferase
1572	 34.30	0	1699924..1701066	-	380	21283301	-	MW1572	-	hypothetical protein
1573	 36.19	0	1701378..1702391	+	337	21283302	-	MW1573	-	hypothetical protein
1574	 24.49	-2	1702628..1702774	-	48	21283303	-	MW1574	-	hypothetical protein
1575	 29.51	0	1702814..1702996	-	60	21283304	csbD	MW1575	-	sigmaB-controlled gene product
1576	 35.22	0	1703096..1703518	-	140	21283305	-	MW1576	-	hypothetical protein
1577	 36.00	0	1703603..1704877	+	424	21283306	-	MW1577	-	recombination factor protein RarA
1578	 32.95	0	1705038..1705811	-	257	21283307	-	MW1578	-	hypothetical protein
1579	 42.16	+2	1706025..1706126	-	33	21283308	-	MW1579	-	hypothetical protein
1580	 35.65	0	1706272..1708038	-	588	21283309	aspS	MW1580	-	aspartyl-tRNA synthetase
1581	 32.78	0	1708054..1709316	-	420	21283310	hisS	MW1581	-	histidyl-tRNA synthetase
1582	 33.56	0	1709777..1710652	-	291	21283311	-	MW1582	-	N-acetylmuramoyl-L-alanine amidase
1583	 32.01	0	1710649..1711101	-	150	21283312	-	MW1583	-	D-tyrosyl-tRNA deacylase
1584	 34.34	0	1711113..1713302	-	729	21283313	relA	MW1584	-	GTP pyrophosphokinase
1585	 34.49	0	1713730..1714248	-	172	21283314	apt	MW1585	-	adenine phosphoribosyltransferase
1586	 32.23	0	1714270..1716543	-	757	21283315	-	MW1586	-	hypothetical protein
1587	 32.59	0	1716746..1719025	-	759	21283316	secF	MW1587	-	bifunctional preprotein translocase subunit SecD/SecF
1588	 31.80	0	1719300..1719560	-	86	21283317	-	MW1588	-	hypothetical protein
1589	 35.70	0	1719579..1720718	-	379	21283318	tgt	MW1589	-	queuine tRNA-ribosyltransferase
1590	 33.53	0	1720741..1721766	-	341	21283319	queA	MW1590	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1591	 37.11	+1	1721768..1722772	-	334	21283320	ruvB	MW1591	-	Holliday junction DNA helicase B
1592	 33.50	0	1722804..1723406	-	200	21283321	ruvA	MW1592	-	holliday junction DNA helicase
1593	 29.19	-1	1723420..1723878	-	152	21283322	-	MW1593	-	hypothetical protein
1594	 36.50	+1	1723888..1725180	-	430	21283323	obgE	MW1594	-	GTPase ObgE
1595	 38.25	+1	1725665..1725949	-	94	21283324	rpmA	MW1595	-	50S ribosomal protein L27
1596	 30.85	0	1725961..1726161	-	66	21283325	-	MW1596	-	hypothetical protein
1597	 33.66	0	1726287..1726595	-	102	21283326	rplU	MW1597	-	50S ribosomal protein L21
1598	 28.63	-1	1726957..1727487	-	176	21283327	-	MW1598	-	hypothetical protein
1599	 30.84	0	1727487..1728329	-	280	21283328	-	MW1599	-	hypothetical protein
1600	 38.33	+1	1728528..1728647	-	39	21283329	-	MW1600	-	hypothetical protein
1601	 28.90	-1	1728721..1729194	-	157	21283330	-	MW1601	-	hypothetical protein
1602	 26.77	-1	1729354..1729551	+	65	21283331	-	MW1602	-	hypothetical protein
1603	 36.84	+1	1729668..1729952	-	94	21283332	-	MW1603	-	hypothetical protein
1604	 32.31	0	1730020..1730706	-	228	21283333	radC	MW1604	-	DNA repair protein RadC
1605	 28.39	-1	1730703..1731410	-	235	21283334	-	MW1605	-	hypothetical protein
1606	 32.78	0	1731680..1732951	-	423	21283335	folC	MW1606	-	folylpolyglutamate synthase
1607	 34.40	0	1732964..1735594	-	876	21283336	valS	MW1607	-	valyl-tRNA synthetase
1608	 32.98	0	1735997..1736557	+	186	21283337	tag	MW1608	-	DNA-3-methyladenine glycosidase
1609	 30.07	0	1736780..1737853	-	357	21283338	-	MW1609	-	hypothetical protein
1610	 35.56	0	1737887..1737976	-	29	21283339	-	MW1610	-	hypothetical protein
1611	 36.52	+1	1738049..1739335	-	428	21283340	hemL	MW1611	-	glutamate-1-semialdehyde aminotransferase
1612	 35.69	0	1739383..1740357	-	324	21283341	hemB	MW1612	-	delta-aminolevulinic acid dehydratase
1613	 30.49	0	1740360..1741028	-	222	21283342	hemD	MW1613	-	uroporphyrinogen III synthase
1614	 34.52	0	1741050..1741976	-	308	21283343	hemC	MW1614	-	porphobilinogen deaminase
1615	 28.31	-1	1742018..1742833	-	271	21283344	hemX	MW1615	-	hemA concentration negative effector hemX
1616	 33.85	0	1742855..1744201	-	448	21283345	hemA	MW1616	-	glutamyl-tRNA reductase
1617	 28.76	-1	1744418..1745008	-	196	21283346	-	MW1617	-	GTPase EngB
1618	 33.97	0	1745162..1746424	-	420	21283347	clpX	MW1618	-	ATP-dependent protease ATP-binding subunit
1619	 33.64	0	1746575..1747876	-	433	21283348	tig	MW1619	-	trigger factor
1620	 29.25	-1	1748039..1748968	-	309	21283349	-	MW1620	-	hypothetical protein
1621	 33.17	0	1748987..1749595	-	202	21283350	-	MW1621	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.