IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1442	 29.52	0	1573725..1574930	+	401	21283171	int	MW1442	-	integrase
1443	 29.46	0	1574973..1576859	-	628	21283172	-	MW1443	-	hypothetical protein
1444	 31.24	0	1577011..1577919	-	302	21283173	-	MW1444	-	hypothetical protein
1445	 32.94	0	1578164..1579930	-	588	21283174	srrB	MW1445	-	staphylococcal respiratory response protein SrrB
1446	 34.44	0	1579896..1580621	-	241	21283175	srrA	MW1446	-	staphylococcal respiratory response protein SrrA
1447	 33.88	0	1580754..1581491	-	245	21283176	rluB	MW1447	-	ribosomal large subunit pseudouridine synthase B
1448	 31.86	0	1581484..1582026	-	180	21283177	-	MW1448	-	hypothetical protein
1449	 30.42	0	1582019..1582774	-	251	21283178	-	MW1449	-	hypothetical protein
1450	 32.35	0	1582842..1583348	+	168	21283179	-	MW1450	-	hypothetical protein
1451	 33.56	0	1583426..1584313	-	295	21283180	xerD	MW1451	-	site-specific recombinase
1452	 36.00	0	1584362..1584811	-	149	21283181	-	MW1452	-	hypothetical protein
1453	 31.86	0	1584916..1585458	-	180	21283182	-	MW1453	-	hypothetical protein
1454	 31.79	0	1585540..1586448	+	302	21283183	-	MW1454	-	hypothetical protein
1455	 32.53	0	1586664..1586912	-	82	21283184	-	MW1455	-	hypothetical protein
1456	 33.86	0	1586928..1587683	-	251	21283185	-	MW1456	-	hypothetical protein
1457	 33.82	0	1587825..1588640	+	271	21283186	-	MW1457	-	hypothetical protein
1458	 33.55	0	1588743..1589663	-	306	21283187	-	MW1458	-	hypothetical protein
1459	 33.40	0	1589976..1591460	+	494	21283188	-	MW1459	-	glucose-6-phosphate 1-dehydrogenase
1460	 33.68	0	1591690..1592556	+	288	21283189	-	MW1460	-	hypothetical protein
1461	 34.55	0	1592638..1594287	-	549	21283190	malA	MW1461	-	alpha-D-1,4-glucosidase
1462	 31.37	0	1594303..1595322	-	339	21283191	malR	MW1462	-	maltose operon transcriptional repressor
1463	 33.06	0	1595516..1595887	-	123	21283192	-	MW1463	-	hypothetical protein
1464	 34.19	0	1596106..1597512	-	468	21283193	gnd	MW1464	-	6-phosphogluconate dehydrogenase
1465	 36.51	+1	1597580..1598713	-	377	21283194	-	MW1465	-	hypothetical protein
1466	 29.97	0	1599282..1600262	-	326	21283195	-	MW1466	-	hypothetical protein
1467	 36.30	+1	1600276..1600713	-	145	21283196	-	MW1467	-	hypothetical protein
1468	 33.10	0	1601064..1602338	-	424	21283197	bmfBB	MW1468	-	branched-chain alpha-keto acid dehydrogenase E2
1469	 35.16	0	1602351..1603334	-	327	21283198	bfmBAB	MW1469	-	branched-chain alpha-keto acid dehydrogenase E1
1470	 38.37	+1	1603334..1604326	-	330	21283199	bfmBAA	MW1470	-	branched-chain alpha-keto acid dehydrogenase E1
1471	 34.74	0	1604342..1605763	-	473	21283200	-	MW1471	-	dihydrolipoamide dehydrogenase
1472	 30.83	0	1605914..1607593	-	559	21283201	recN	MW1472	-	DNA repair protein
1473	 30.02	0	1607609..1608061	-	150	21283202	ahrC	MW1473	-	arginine repressor
1474	 34.24	0	1608493..1609374	-	293	21283203	ispA	MW1474	-	hypothetical protein
1475	 30.30	0	1609352..1609582	-	76	21283204	-	MW1475	-	hypothetical protein
1476	 31.24	0	1609575..1610912	-	445	21283205	xseA	MW1476	-	exodeoxyribonuclease VII large subunit
1477	 29.74	0	1610929..1611318	-	129	21283206	nusB	MW1477	-	transcription antitermination protein NusB
1478	 29.20	-1	1611378..1611740	-	120	21283207	-	MW1478	-	hypothetical protein
1479	 36.21	0	1611755..1613110	-	451	21283208	accC	MW1479	-	acetyl-CoA carboxylase biotin carboxylase subunit
1480	 34.84	0	1613110..1613574	-	154	21283209	accB	MW1480	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1481	 32.97	0	1614048..1614605	-	185	21283210	-	MW1481	-	elongation factor P
1482	 32.20	0	1614631..1615692	-	353	21283211	-	MW1482	-	Xaa-Pro dipeptidase
1483	 27.52	-1	1615797..1616381	+	194	21283212	-	MW1483	-	hypothetical protein
1484	 29.68	0	1616395..1616613	+	72	21283213	-	MW1484	-	hypothetical protein
1485	 34.54	0	1616677..1617507	-	276	21283214	-	MW1485	-	hypothetical protein
1486	 33.85	0	1617665..1618051	+	128	21283215	-	MW1486	-	hypothetical protein
1487	 34.56	0	1618416..1619888	-	490	21283216	-	MW1487	-	glycine dehydrogenase subunit 2
1488	 34.37	0	1619881..1621227	-	448	21283217	-	MW1488	-	glycine dehydrogenase subunit 1
1489	 31.32	0	1621247..1622338	-	363	21283218	-	MW1489	-	glycine cleavage system aminomethyltransferase T
1490	 28.38	-1	1622497..1623021	-	174	21283219	-	MW1490	-	hypothetical protein
1491	 26.31	-1	1623254..1623751	-	165	21283220	-	MW1491	-	hypothetical protein
1492	 28.41	-1	1623669..1624013	-	114	21283221	-	MW1492	-	hypothetical protein
1493	 25.52	-2	1624000..1624434	-	144	21283222	-	MW1493	-	hypothetical protein
1494	 29.49	0	1624424..1624735	-	103	21283223	-	MW1494	-	exogenous DNA-binding protein comGC
1495	 27.08	-1	1624749..1625819	-	356	21283224	-	MW1495	-	hypothetical protein
1496	 31.28	0	1625791..1626765	-	324	21283225	-	MW1496	-	hypothetical protein
1497	 32.69	0	1626817..1627440	-	207	21283226	-	MW1497	-	hypothetical protein
1498	 31.21	0	1627437..1627766	-	109	21283227	-	MW1498	-	hypothetical protein
1499	 34.65	0	1627766..1628752	-	328	21283228	glcK	MW1499	-	glucokinase
1500	 26.47	-1	1628749..1628952	-	67	21283229	-	MW1500	-	hypothetical protein
1501	 27.73	-1	1628933..1630396	-	487	21283230	-	MW1501	-	hypothetical protein
1502	 29.81	0	1630408..1630947	-	179	21283231	-	MW1502	-	hypothetical protein
1503	 34.00	0	1631156..1631305	-	49	21283232	rpmG	MW1503	-	50S ribosomal protein L33
1504	 33.48	0	1631418..1633493	-	691	21283233	pbp3	MW1504	-	penicillin-binding protein 3
1505	 34.67	0	1633614..1634213	-	199	21283234	sodA	MW1505	-	superoxide dismutase SodA
1506	 28.95	-1	1634489..1634899	-	136	21283235	-	MW1506	-	hypothetical protein
1507	 31.83	0	1634886..1635749	-	287	21283236	-	MW1507	-	hypothetical protein
1508	 29.69	0	1635791..1636558	-	255	21283237	-	MW1508	-	hypothetical protein
1509	 33.33	0	1636702..1637592	-	296	21283238	-	MW1509	-	endonuclease IV
1510	 32.29	0	1637602..1638948	-	448	21283239	-	MW1510	-	hypothetical protein
1511	 31.06	0	1639062..1640162	-	366	21283240	-	MW1511	-	hypothetical protein
1512	 32.15	0	1640165..1640842	-	225	21283241	-	MW1512	-	hypothetical protein
1513	 33.88	0	1640973..1642079	-	368	21283242	sigA	MW1513	-	RNA polymerase sigma factor RpoD
1514	 31.79	0	1642303..1644120	-	605	21283243	dnaG	MW1514	-	DNA primase
1515	 32.84	0	1644181..1644999	-	272	21283244	-	MW1515	-	hypothetical protein
1516	 30.37	0	1645010..1645549	-	179	21283245	-	MW1516	-	hypothetical protein
1517	 34.27	0	1645968..1647359	+	463	21283246	glyS	MW1517	-	glycyl-tRNA synthetase
1518	 32.40	0	1647510..1648262	-	250	21283247	-	MW1518	-	hypothetical protein
1519	 33.22	0	1648284..1649183	-	299	21283248	era	MW1519	-	GTP-binding protein Era
1520	 35.06	0	1649184..1649588	-	134	21283249	cdd	MW1520	-	cytidine deaminase
1521	 28.70	-1	1649599..1649943	-	114	21283250	-	MW1521	-	hypothetical protein
1522	 32.69	0	1649946..1650413	-	155	21283251	-	MW1522	-	hypothetical protein
1523	 35.02	0	1650414..1651361	-	315	21283252	phoH	MW1523	-	hypothetical protein
1524	 32.33	0	1651665..1652363	-	232	21283253	-	MW1524	-	hypothetical protein
1525	 37.07	+1	1652380..1653369	-	329	21283254	-	MW1525	-	hypothetical protein
1526	 32.20	0	1653387..1654094	-	235	21283255	-	MW1526	-	hypothetical protein
1527	 32.20	0	1654314..1654490	-	58	21283256	rpsU	MW1527	-	30S ribosomal protein S21
1528	 34.74	0	1654783..1656129	-	448	21283257	-	MW1528	-	hypothetical protein
1529	 31.61	0	1656136..1656888	-	250	21283258	-	MW1529	-	hypothetical protein
1530	 34.29	0	1656890..1657828	-	312	21283259	-	MW1530	-	hypothetical protein
1531	 35.70	0	1657832..1658971	-	379	21283260	dnaJ	MW1531	-	DnaJ protein
1532	 35.57	0	1659107..1660939	-	610	21283261	dnaK	MW1532	-	DnaK protein
1533	 31.26	0	1661008..1661634	-	208	21283262	grpE	MW1533	-	heat shock protein GrpE
1534	 28.53	-1	1661666..1662643	-	325	21283263	hrcA	MW1534	-	heat-inducible transcriptional repressor
1535	 32.53	0	1662744..1663868	-	374	21283264	hemN	MW1535	-	coproporphyrinogen III oxidase
1536	 33.99	0	1664492..1666315	-	607	21283265	lepA	MW1536	-	GTP-binding protein LepA
1537	 31.35	0	1666661..1666912	+	83	21283266	rpsT	MW1537	-	30S ribosomal protein S20
1538	 26.77	-1	1666957..1667931	-	324	21283267	holA	MW1538	-	DNA polymerase III subunit delta
1539	 28.20	-1	1667988..1670189	-	733	21283268	-	MW1539	-	hypothetical protein
1540	 33.12	0	1670194..1670655	-	153	21283269	comEB	MW1540	-	late competence operon required for DNA binding and uptake comEB
1541	 29.50	0	1670747..1671424	-	225	21283270	-	MW1541	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.