IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1411	 35.90	0	1561302..1561457	-	51	21283140	-	MW1411	-	hypothetical protein
1412	 31.34	0	1561457..1561657	-	66	21283141	-	MW1412	-	hypothetical protein
1413	 40.74	+2	1561632..1561820	-	62	21283142	-	MW1413	-	hypothetical protein
1414	 27.85	-1	1561817..1562053	-	78	21283143	-	MW1414	-	hypothetical protein
1415	 31.84	0	1562099..1562632	-	177	21283144	-	MW1415	-	hypothetical protein
1416	 34.57	0	1562647..1562808	-	53	21283145	-	MW1416	-	hypothetical protein
1417	 29.79	0	1562809..1563090	-	93	21283146	-	MW1417	-	hypothetical protein
1418	 31.03	0	1563091..1563264	-	57	21283147	-	MW1418	-	hypothetical protein
1419	 37.65	+1	1563254..1563508	-	84	21283148	-	MW1419	-	hypothetical protein
1420	 37.45	+1	1563520..1563762	-	80	21283149	-	MW1420	-	hypothetical protein
1421	 34.33	0	1563777..1563977	-	66	21283150	-	MW1421	-	hypothetical protein
1422	 38.37	+1	1563980..1564237	-	85	21283151	-	MW1422	-	hypothetical protein
1423	 33.83	0	1564237..1564638	-	133	21283152	-	MW1423	-	hypothetical protein
1424	 29.03	-1	1564638..1564823	-	61	21283153	-	MW1424	-	hypothetical protein
1425	 35.12	0	1564836..1566797	-	653	21283154	-	MW1425	-	DNA polymerase
1426	 34.41	0	1566856..1567413	-	185	21283155	-	MW1426	-	hypothetical protein
1427	 34.62	0	1567439..1568605	-	388	21283156	-	MW1427	-	hypothetical protein
1428	 29.20	-1	1568602..1568964	-	120	21283157	-	MW1428	-	hypothetical protein
1429	 32.72	0	1568979..1569302	-	107	21283158	-	MW1429	-	hypothetical protein
1430	 38.89	+1	1569381..1569542	-	53	21283159	-	MW1430	-	hypothetical protein
1431	 31.06	0	1569555..1569818	-	87	21283160	-	MW1431	-	hypothetical protein
1432	 31.48	0	1569843..1570058	-	71	21283161	-	MW1432	-	hypothetical protein
1433	 28.96	-1	1570113..1570478	+	121	21283162	-	MW1433	-	hypothetical protein
1434	 35.37	0	1570447..1570692	-	81	21283163	-	MW1434	-	hypothetical protein
1435	 30.92	0	1570708..1570956	-	82	21283164	-	MW1435	-	hypothetical protein
1436	 33.02	0	1571120..1571443	+	107	21283165	-	MW1436	-	phage repressor
1437	 36.07	0	1571516..1571917	+	133	21283166	-	MW1437	-	hypothetical protein
1438	 31.26	0	1571935..1572369	+	144	21283167	-	MW1438	-	hypothetical protein
1439	 30.56	0	1572398..1572793	+	131	21283168	-	MW1439	-	hypothetical protein
1440	 36.19	0	1572901..1573005	+	34	21283169	-	MW1440	-	hypothetical protein
1441	 23.72	-2	1572992..1573615	-	207	21283170	-	MW1441	-	hypothetical protein
1442	 29.52	0	1573725..1574930	+	401	21283171	int	MW1442	-	integrase
1443	 29.46	0	1574973..1576859	-	628	21283172	-	MW1443	-	hypothetical protein
1444	 31.24	0	1577011..1577919	-	302	21283173	-	MW1444	-	hypothetical protein
1445	 32.94	0	1578164..1579930	-	588	21283174	srrB	MW1445	-	staphylococcal respiratory response protein SrrB
1446	 34.44	0	1579896..1580621	-	241	21283175	srrA	MW1446	-	staphylococcal respiratory response protein SrrA
1447	 33.88	0	1580754..1581491	-	245	21283176	rluB	MW1447	-	ribosomal large subunit pseudouridine synthase B
1448	 31.86	0	1581484..1582026	-	180	21283177	-	MW1448	-	hypothetical protein
1449	 30.42	0	1582019..1582774	-	251	21283178	-	MW1449	-	hypothetical protein
1450	 32.35	0	1582842..1583348	+	168	21283179	-	MW1450	-	hypothetical protein
1451	 33.56	0	1583426..1584313	-	295	21283180	xerD	MW1451	-	site-specific recombinase
1452	 36.00	0	1584362..1584811	-	149	21283181	-	MW1452	-	hypothetical protein
1453	 31.86	0	1584916..1585458	-	180	21283182	-	MW1453	-	hypothetical protein
1454	 31.79	0	1585540..1586448	+	302	21283183	-	MW1454	-	hypothetical protein
1455	 32.53	0	1586664..1586912	-	82	21283184	-	MW1455	-	hypothetical protein
1456	 33.86	0	1586928..1587683	-	251	21283185	-	MW1456	-	hypothetical protein
1457	 33.82	0	1587825..1588640	+	271	21283186	-	MW1457	-	hypothetical protein
1458	 33.55	0	1588743..1589663	-	306	21283187	-	MW1458	-	hypothetical protein
1459	 33.40	0	1589976..1591460	+	494	21283188	-	MW1459	-	glucose-6-phosphate 1-dehydrogenase
1460	 33.68	0	1591690..1592556	+	288	21283189	-	MW1460	-	hypothetical protein
1461	 34.55	0	1592638..1594287	-	549	21283190	malA	MW1461	-	alpha-D-1,4-glucosidase
1462	 31.37	0	1594303..1595322	-	339	21283191	malR	MW1462	-	maltose operon transcriptional repressor
1463	 33.06	0	1595516..1595887	-	123	21283192	-	MW1463	-	hypothetical protein
1464	 34.19	0	1596106..1597512	-	468	21283193	gnd	MW1464	-	6-phosphogluconate dehydrogenase
1465	 36.51	+1	1597580..1598713	-	377	21283194	-	MW1465	-	hypothetical protein
1466	 29.97	0	1599282..1600262	-	326	21283195	-	MW1466	-	hypothetical protein
1467	 36.30	+1	1600276..1600713	-	145	21283196	-	MW1467	-	hypothetical protein
1468	 33.10	0	1601064..1602338	-	424	21283197	bmfBB	MW1468	-	branched-chain alpha-keto acid dehydrogenase E2
1469	 35.16	0	1602351..1603334	-	327	21283198	bfmBAB	MW1469	-	branched-chain alpha-keto acid dehydrogenase E1
1470	 38.37	+1	1603334..1604326	-	330	21283199	bfmBAA	MW1470	-	branched-chain alpha-keto acid dehydrogenase E1
1471	 34.74	0	1604342..1605763	-	473	21283200	-	MW1471	-	dihydrolipoamide dehydrogenase
1472	 30.83	0	1605914..1607593	-	559	21283201	recN	MW1472	-	DNA repair protein
1473	 30.02	0	1607609..1608061	-	150	21283202	ahrC	MW1473	-	arginine repressor
1474	 34.24	0	1608493..1609374	-	293	21283203	ispA	MW1474	-	hypothetical protein
1475	 30.30	0	1609352..1609582	-	76	21283204	-	MW1475	-	hypothetical protein
1476	 31.24	0	1609575..1610912	-	445	21283205	xseA	MW1476	-	exodeoxyribonuclease VII large subunit
1477	 29.74	0	1610929..1611318	-	129	21283206	nusB	MW1477	-	transcription antitermination protein NusB
1478	 29.20	-1	1611378..1611740	-	120	21283207	-	MW1478	-	hypothetical protein
1479	 36.21	0	1611755..1613110	-	451	21283208	accC	MW1479	-	acetyl-CoA carboxylase biotin carboxylase subunit
1480	 34.84	0	1613110..1613574	-	154	21283209	accB	MW1480	-	acetyl-CoA carboxylase biotin carboxyl carrier subunit
1481	 32.97	0	1614048..1614605	-	185	21283210	-	MW1481	-	elongation factor P
1482	 32.20	0	1614631..1615692	-	353	21283211	-	MW1482	-	Xaa-Pro dipeptidase
1483	 27.52	-1	1615797..1616381	+	194	21283212	-	MW1483	-	hypothetical protein
1484	 29.68	0	1616395..1616613	+	72	21283213	-	MW1484	-	hypothetical protein
1485	 34.54	0	1616677..1617507	-	276	21283214	-	MW1485	-	hypothetical protein
1486	 33.85	0	1617665..1618051	+	128	21283215	-	MW1486	-	hypothetical protein
1487	 34.56	0	1618416..1619888	-	490	21283216	-	MW1487	-	glycine dehydrogenase subunit 2
1488	 34.37	0	1619881..1621227	-	448	21283217	-	MW1488	-	glycine dehydrogenase subunit 1
1489	 31.32	0	1621247..1622338	-	363	21283218	-	MW1489	-	glycine cleavage system aminomethyltransferase T
1490	 28.38	-1	1622497..1623021	-	174	21283219	-	MW1490	-	hypothetical protein
1491	 26.31	-1	1623254..1623751	-	165	21283220	-	MW1491	-	hypothetical protein
1492	 28.41	-1	1623669..1624013	-	114	21283221	-	MW1492	-	hypothetical protein
1493	 25.52	-2	1624000..1624434	-	144	21283222	-	MW1493	-	hypothetical protein
1494	 29.49	0	1624424..1624735	-	103	21283223	-	MW1494	-	exogenous DNA-binding protein comGC
1495	 27.08	-1	1624749..1625819	-	356	21283224	-	MW1495	-	hypothetical protein
1496	 31.28	0	1625791..1626765	-	324	21283225	-	MW1496	-	hypothetical protein
1497	 32.69	0	1626817..1627440	-	207	21283226	-	MW1497	-	hypothetical protein
1498	 31.21	0	1627437..1627766	-	109	21283227	-	MW1498	-	hypothetical protein
1499	 34.65	0	1627766..1628752	-	328	21283228	glcK	MW1499	-	glucokinase
1500	 26.47	-1	1628749..1628952	-	67	21283229	-	MW1500	-	hypothetical protein
1501	 27.73	-1	1628933..1630396	-	487	21283230	-	MW1501	-	hypothetical protein
1502	 29.81	0	1630408..1630947	-	179	21283231	-	MW1502	-	hypothetical protein
1503	 34.00	0	1631156..1631305	-	49	21283232	rpmG	MW1503	-	50S ribosomal protein L33
1504	 33.48	0	1631418..1633493	-	691	21283233	pbp3	MW1504	-	penicillin-binding protein 3
1505	 34.67	0	1633614..1634213	-	199	21283234	sodA	MW1505	-	superoxide dismutase SodA
1506	 28.95	-1	1634489..1634899	-	136	21283235	-	MW1506	-	hypothetical protein
1507	 31.83	0	1634886..1635749	-	287	21283236	-	MW1507	-	hypothetical protein
1508	 29.69	0	1635791..1636558	-	255	21283237	-	MW1508	-	hypothetical protein
1509	 33.33	0	1636702..1637592	-	296	21283238	-	MW1509	-	endonuclease IV
1510	 32.29	0	1637602..1638948	-	448	21283239	-	MW1510	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.