IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1167	 30.82	0	1279391..1280542	+	383	21282896	cinA	MW1167	-	competence-damage inducible protein cinA
1168	 37.07	+1	1280707..1281750	+	347	21282897	recA	MW1168	-	recombinase A
1169	 35.77	0	1282104..1283663	+	519	21282898	-	MW1169	-	phosphodiesterase
1170	 27.31	-1	1283960..1284175	-	71	21282899	-	MW1170	-	hypothetical protein
1171	 34.59	0	1284349..1285146	+	265	21282900	-	MW1171	-	hypothetical protein
1172	 35.04	0	1285286..1287046	+	586	21282901	-	MW1172	-	hypothetical protein
1173	 33.79	0	1287047..1287913	+	288	21282902	-	MW1173	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1174	 30.61	0	1288007..1288300	+	97	21282903	-	MW1174	-	hypothetical protein
1175	 32.82	0	1288434..1289978	+	514	21282904	-	MW1175	-	hypothetical protein
1176	 29.78	0	1289979..1290344	+	121	21282905	-	MW1176	-	hypothetical protein
1177	 33.94	0	1290371..1290862	+	163	21282906	-	MW1177	-	hypothetical protein
1178	 32.11	0	1291165..1293783	+	872	21282907	mutS	MW1178	-	DNA mismatch repair protein
1179	 31.59	0	1293796..1295805	+	669	21282908	mutL	MW1179	-	DNA mismatch repair protein
1180	 29.21	-1	1295820..1296353	+	177	21282909	glpP	MW1180	-	glycerol uptake operon antiterminator regulatory protein
1181	 22.22	-2	1296390..1296479	-	29	21282910	-	MW1181	-	hypothetical protein
1182	 37.73	+1	1296828..1297646	+	272	21282911	glpF	MW1182	-	glycerol uptake facilitator
1183	 36.81	+1	1297775..1299271	+	498	21282912	glpK	MW1183	-	glycerol kinase
1184	 34.26	0	1299381..1301102	+	573	21282913	glpD	MW1184	-	aerobic glycerol-3-phosphate dehydrogenase
1185	 30.27	0	1301252..1302166	+	304	21282914	-	MW1185	-	hypothetical protein
1186	 31.84	0	1302184..1303119	+	311	21282915	miaA	MW1186	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1187	 34.19	0	1303134..1303367	+	77	21282916	-	MW1187	-	hypothetical protein
1188	 33.54	0	1303589..1304065	-	158	21282917	bsaA	MW1188	-	glutathione peroxidase
1189	 31.40	0	1304177..1305415	+	412	21282918	-	MW1189	-	hypothetical protein
1190	 34.71	0	1305434..1306672	+	412	21282919	-	MW1190	-	hypothetical protein
1191	 32.52	0	1306916..1307284	+	122	21282920	glnR	MW1191	-	glutamine synthetase repressor
1192	 35.27	0	1307303..1308643	+	446	21282921	glnA	MW1192	-	glutamine-ammonia ligase
1193	 24.15	-2	1310546..1310752	+	68	21282922	-	MW1193	-	hypothetical protein
1194	 22.86	-2	1311991..1312095	+	34	21282923	-	MW1194	-	hypothetical protein
1195	 26.67	-1	1312686..1312790	+	34	21282924	-	MW1195	-	hypothetical protein
1196	 25.40	-2	1312919..1313170	+	83	21282925	-	MW1196	-	hypothetical protein
1197	 22.55	-2	1313774..1314079	+	101	21282926	-	MW1197	-	hypothetical protein
1198	 23.58	-2	1314085..1314207	+	40	21282927	-	MW1198	-	hypothetical protein
1199	 34.27	0	1314367..1314579	+	70	21282928	-	MW1199	-	hypothetical protein
1200	 23.58	-2	1314981..1315103	+	40	21282929	-	MW1200	-	hypothetical protein
1201	 27.92	-1	1315360..1315821	+	153	21282930	-	MW1201	-	hypothetical protein
1202	 28.72	-1	1315832..1316026	+	64	21282931	-	MW1202	-	hypothetical protein
1203	 33.43	0	1316587..1317612	-	341	21282932	-	MW1203	-	hypothetical protein
1204	 22.22	-2	1317882..1318079	+	65	21282933	-	MW1204	-	hypothetical protein
1205	 32.28	0	1318100..1319617	+	505	21282934	-	MW1205	-	hypothetical protein
1206	 27.00	-1	1319801..1320700	+	299	21282935	-	MW1206	-	hypothetical protein
1207	 27.87	-1	1320669..1321400	+	243	21282936	-	MW1207	-	hypothetical protein
1208	 26.74	-1	1321404..1322495	+	363	21282937	-	MW1208	-	hypothetical protein
1209	 29.85	0	1322492..1323094	+	200	21282938	-	MW1209	-	hypothetical protein
1210	 26.98	-1	1323207..1323395	-	62	21282939	-	MW1210	-	hypothetical protein
1211	 31.84	0	1323534..1324067	+	177	21282940	nuc	MW1211	-	thermonuclease
1212	 29.71	0	1324210..1325064	-	284	21282941	-	MW1212	-	hypothetical protein
1213	 29.61	0	1325380..1325970	+	196	21282942	-	MW1213	-	hypothetical protein
1214	 31.45	0	1326024..1327406	-	460	21282943	-	MW1214	-	aspartate kinase
1215	 32.63	0	1327597..1328877	+	426	21282944	dhoM	MW1215	-	homoserine dehydrogenase
1216	 35.12	0	1328883..1329944	+	353	21282945	thrC	MW1216	-	threonine synthase
1217	 35.74	0	1329946..1330860	+	304	21282946	thrB	MW1217	-	homoserine kinase
1218	 33.33	0	1330918..1331721	+	267	21282947	-	MW1218	-	hypothetical protein
1219	 30.16	0	1332014..1332328	-	104	21282948	-	MW1219	-	hypothetical protein
1220	 33.20	0	1332546..1334000	-	484	21282949	-	MW1220	-	gamma-aminobutyrate permease
1221	 36.03	0	1334204..1335721	+	505	21282950	katA	MW1221	-	catalase
1222	 33.33	0	1335812..1335961	+	49	21282951	rpmG	MW1222	-	50S ribosomal protein L33
1223	 32.59	0	1336415..1336684	+	89	21282952	rpsN	MW1223	-	30S ribosomal protein S14
1224	 33.44	0	1336841..1337818	+	325	21282953	-	MW1224	-	guanosine 5'-monophosphate oxidoreductase
1225	 28.70	-1	1337993..1338856	+	287	21282954	-	MW1225	-	hypothetical protein
1226	 36.22	0	1339236..1339859	-	207	21282955	lexA	MW1226	-	LexA repressor
1227	 31.62	0	1340002..1340235	+	77	21282956	-	MW1227	-	hypothetical protein
1228	 27.50	-1	1340371..1340610	+	79	21282957	-	MW1228	-	hypothetical protein
1229	 35.95	0	1340731..1342719	+	662	21282958	tkt	MW1229	-	transketolase
1230	 31.28	0	1342997..1343239	+	80	21282959	-	MW1230	-	hypothetical protein
1231	 31.20	0	1343418..1343885	+	155	21282960	-	MW1231	-	hypothetical protein
1232	 30.66	0	1344009..1345130	+	373	21282961	-	MW1232	-	hypothetical protein
1233	 28.42	-1	1345134..1348163	+	1009	21282962	-	MW1233	-	hypothetical protein
1234	 28.83	-1	1348193..1348681	+	162	21282963	-	MW1234	-	hypothetical protein
1235	 30.85	0	1348234..1348596	-	120	21282964	mscL	MW1235	-	large-conductance mechanosensitive channel
1236	 35.82	0	1348800..1350446	+	548	21282965	opuD	MW1236	-	glycine betaine transporter
1237	 35.51	0	1351280..1353985	+	901	21282966	citB	MW1237	-	aconitate hydratase
1238	 32.26	0	1354165..1354632	+	155	21282967	-	MW1238	-	hypothetical protein
1239	 33.67	0	1354839..1355135	-	98	21282968	-	MW1239	-	hypothetical protein
1240	 33.83	0	1355510..1356118	-	202	21282969	-	MW1240	-	hypothetical protein
1241	 34.93	0	1356318..1358315	+	665	21282970	parE	MW1241	-	DNA topoisomerase IV subunit B
1242	 32.13	0	1358315..1360717	+	800	21282971	parC	MW1242	-	DNA topoisomerase IV subunit A
1243	 35.73	0	1360967..1362427	+	486	21282972	alsT	MW1243	-	amino acid carrier protein (sodium/alanine symporter)
1244	 27.82	-1	1362927..1363778	+	283	21282973	glcT	MW1244	-	transcription antiterminator
1245	 26.04	-2	1363825..1363920	+	31	21282974	-	MW1245	-	hypothetical protein
1246	 30.69	0	1363913..1365121	+	402	21282975	-	MW1246	-	hypothetical protein
1247	 31.15	0	1365602..1368124	+	840	21282976	fmtC	MW1247	-	oxacillin resistance-related FmtC protein
1248	 34.31	0	1368327..1368836	-	169	21282977	msrA	MW1248	-	methionine sulfoxide reductase A
1249	 33.43	0	1368973..1369956	+	327	21282978	msrR	MW1249	-	peptide methionine sulfoxide reductase regulator MsrR
1250	 36.51	+1	1370044..1370232	-	62	21282979	-	MW1250	-	4-oxalocrotonate tautomerase
1251	 33.81	0	1370377..1371639	+	420	21282980	-	MW1251	-	hypothetical protein
1252	 33.33	0	1371775..1372866	-	363	21282981	tyrA	MW1252	-	prephenate dehydrogenase
1253	 33.43	0	1373031..1374062	+	343	21282982	-	MW1253	-	hypothetical protein
1254	 31.77	0	1374554..1375960	+	468	21282983	-	MW1254	-	anthranilate synthase component I
1255	 35.80	0	1375957..1376523	+	188	21282984	trpG	MW1255	-	anthranilate synthase component II
1256	 33.83	0	1376529..1377527	+	332	21282985	trpD	MW1256	-	anthranilate phosphoribosyltransferase
1257	 31.67	0	1377529..1378311	+	260	21282986	trpC	MW1257	-	indole-3-glycerol-phosphate synthase
1258	 31.60	0	1378311..1378943	+	210	21282987	trpF	MW1258	-	phosphoriborylanthranilate isomerase
1259	 37.70	+1	1378936..1380150	+	404	21282988	trpB	MW1259	-	tryptophan synthase subunit beta
1260	 34.16	0	1380143..1380871	+	242	21282989	trpA	MW1260	-	tryptophan synthase subunit alpha
1261	 31.75	0	1381193..1382455	+	420	21282990	femA	MW1261	-	factor essential for expression of methicillin resistance
1262	 31.59	0	1382474..1383733	+	419	21282991	femB	MW1262	-	FemB protein
1263	 24.35	-2	1384022..1384678	+	218	21282992	-	MW1263	-	hypothetical protein
1264	 31.65	0	1384999..1385235	+	78	21282993	-	MW1264	-	hypothetical protein
1265	 30.63	0	1385051..1385716	+	221	21282994	-	MW1265	-	hypothetical protein
1266	 32.91	0	1385765..1386238	-	157	21282995	-	MW1266	-	hypothetical protein
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.