IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1093	 32.42	0	1191457..1191675	+	72	21282822	-	MW1093	-	hypothetical protein
1094	 34.83	0	1191891..1193090	+	399	21282823	-	MW1094	-	hypothetical protein
1095	 34.83	0	1193090..1195498	+	802	21282824	priA	MW1095	-	primosomal protein
1096	 30.92	0	1196001..1196954	+	317	21282825	-	MW1096	-	hypothetical protein
1097	 30.82	0	1197117..1197395	-	92	21282826	-	MW1097	-	hypothetical protein
1098	 33.74	0	1197619..1198107	+	162	21282827	-	MW1098	-	hypothetical protein
1099	 34.94	0	1198100..1199035	+	311	21282828	-	MW1099	-	methionyl-tRNA formyltransferase
1100	 32.87	0	1199032..1200339	+	435	21282829	-	MW1100	-	hypothetical protein
1101	 33.88	0	1200342..1201436	+	364	21282830	-	MW1101	-	hypothetical protein
1102	 32.53	0	1201443..1202186	+	247	21282831	-	MW1102	-	hypothetical protein
1103	 33.63	0	1202183..1204177	+	664	21282832	-	MW1103	-	hypothetical protein
1104	 31.51	0	1204405..1205280	+	291	21282833	-	MW1104	-	hypothetical protein
1105	 33.02	0	1205281..1205925	+	214	21282834	cfxE	MW1105	-	hypothetical protein
1106	 32.87	0	1205932..1206573	+	213	21282835	-	MW1106	-	hypothetical protein
1107	 37.57	+1	1206954..1207142	-	62	21282836	rpmB	MW1107	-	50S ribosomal protein L28
1108	 32.80	0	1207585..1207959	+	124	21282837	-	MW1108	-	hypothetical protein
1109	 34.06	0	1207974..1209620	+	548	21282838	-	MW1109	-	hypothetical protein
1110	 33.77	0	1209810..1211870	+	686	21282839	recG	MW1110	-	ATP-dependent DNA helicase
1111	 31.54	0	1212088..1212645	+	185	21282840	-	MW1111	-	fatty acid biosynthesis transcriptional regulator
1112	 34.95	0	1212650..1213636	+	328	21282841	plsX	MW1112	-	putative glycerol-3-phosphate acyltransferase PlsX
1113	 33.55	0	1213629..1214555	+	308	21282842	fabD	MW1113	-	malonyl CoA-acyl carrier protein transacylase
1114	 36.57	+1	1214542..1215282	+	246	21282843	fabG	MW1114	-	3-oxoacyl- reductase (acyl-carrier protein)
1115	 34.19	0	1215716..1215949	+	77	21282844	hmrB	MW1115	-	acyl carrier protein
1116	 34.15	0	1216065..1216796	+	243	21282845	rnc	MW1116	-	RNase III
1117	 32.16	0	1216943..1220509	+	1188	21282846	smc	MW1117	-	chromosome segregation SMC protein
1118	 34.61	0	1220509..1221759	+	416	21282847	-	MW1118	-	signal recognition particle
1119	 27.03	-1	1221746..1222078	+	110	21282848	-	MW1119	-	hypothetical protein
1120	 34.87	0	1222104..1223471	+	455	21282849	ffh	MW1120	-	hypothetical protein
1121	 36.23	0	1223906..1224181	+	91	21282850	rpsP	MW1121	-	30S ribosomal protein S16
1122	 31.75	0	1224369..1224872	+	167	21282851	rimM	MW1122	-	16S rRNA processing protein
1123	 35.64	0	1224872..1225609	+	245	21282852	trmD	MW1123	-	tRNA (guanine-N1)-mehtyltransferase
1124	 39.03	+1	1225712..1226062	+	116	21282853	rplS	MW1124	-	50S ribosomal protein L19
1125	 29.92	0	1226645..1229251	-	868	21282854	-	MW1125	-	hypothetical protein
1126	 33.45	0	1229652..1230536	+	294	21282855	rbgA	MW1126	-	ribosomal biogenesis GTPase
1127	 34.64	0	1230520..1231287	+	255	21282856	rnhB	MW1127	-	RNase HII
1128	 35.39	0	1231396..1232562	+	388	21282857	sucC	MW1128	-	succinyl-CoA synthetase subunit beta
1129	 38.28	+1	1232584..1233492	+	302	21282858	sucD	MW1129	-	succinyl-CoA synthetase subunit alpha
1130	 29.13	-1	1233719..1234837	+	372	21282859	lytN	MW1130	-	LytN protein
1131	 25.70	-2	1234865..1236109	+	414	21282860	fmhC	MW1131	-	FmhC protein
1132	 30.13	0	1236282..1237154	+	290	21282861	-	MW1132	-	hypothetical protein
1133	 35.12	0	1237328..1239403	+	691	21282862	-	MW1133	-	DNA topoisomerase I
1134	 35.47	0	1239559..1240866	+	435	21282863	gid	MW1134	-	tRNA (uracil-5-)-methyltransferase Gid
1135	 32.22	0	1241283..1242179	+	298	21282864	xerC	MW1135	-	hypothetical protein
1136	 39.56	+1	1242176..1242721	+	181	21282865	clpQ	MW1136	-	ATP-dependent protease peptidase subunit
1137	 34.62	0	1242787..1244190	+	467	21282866	hslU	MW1137	-	ATP-dependent protease ATP-binding subunit
1138	 31.91	0	1244215..1244988	+	257	21282867	codY	MW1138	-	transcriptional repressor CodY
1139	 35.16	0	1245330..1246097	+	255	21282868	rpsB	MW1139	-	30S ribosomal protein S2
1140	 36.62	+1	1246279..1247160	+	293	21282869	tsf	MW1140	-	elongation factor Ts
1141	 36.24	0	1247297..1248019	+	240	21282870	smbA	MW1141	-	uridylate kinase
1142	 34.95	0	1248038..1248592	+	184	21282871	frr	MW1142	-	ribosome recycling factor
1143	 30.09	0	1248965..1249735	+	256	21282872	uppS	MW1143	-	undecaprenyl pyrophosphatase synthetase
1144	 32.18	0	1249742..1250524	+	260	21282873	cdsA	MW1144	-	phosphatidate cytidylyltransferase
1145	 33.88	0	1250736..1252022	+	428	21282874	-	MW1145	-	hypothetical protein
1146	 35.15	0	1252042..1253745	+	567	21282875	proS	MW1146	-	prolyl-tRNA synthetase
1147	 34.93	0	1254003..1258319	+	1438	21282876	polC	MW1147	-	DNA polymerase III PolC
1148	 32.48	0	1258609..1259076	+	155	21282877	-	MW1148	-	hypothetical protein
1149	 35.71	0	1259097..1260272	+	391	21282878	nusA	MW1149	-	transcription elongation factor NusA
1150	 30.18	0	1260293..1260577	+	94	21282879	-	MW1150	-	hypothetical protein
1151	 32.08	0	1260574..1260891	+	105	21282880	-	MW1151	-	hypothetical protein
1152	 33.99	0	1260896..1263013	+	705	21282881	infB	MW1152	-	translation initiation factor IF-2
1153	 30.48	0	1263399..1263749	+	116	21282882	rbfA	MW1153	-	ribosome-binding factor A
1154	 32.46	0	1263919..1264836	+	305	21282883	truB	MW1154	-	tRNA pseudouridine 5S synthase
1155	 33.13	0	1264851..1265822	+	323	21282884	ribC	MW1155	-	riboflavin kinase / FAD synthase ribC
1156	 35.93	0	1265937..1266206	+	89	21282885	rpsO	MW1156	-	30S ribosomal protein S15
1157	 37.05	+1	1266574..1268670	+	698	21282886	pnpA	MW1157	-	polynucleotide phosphorylase/polyadenylase
1158	 33.69	0	1268906..1270579	+	557	21282887	-	MW1158	-	hypothetical protein
1159	 33.63	0	1270836..1273205	+	789	21282888	spoIIIE	MW1159	-	hypothetical protein
1160	 31.37	0	1273210..1273923	+	237	21282889	-	MW1160	-	hypothetical protein
1161	 29.70	0	1273954..1275219	+	421	21282890	-	MW1161	-	hypothetical protein
1162	 31.08	0	1275219..1276505	+	428	21282891	-	MW1162	-	hypothetical protein
1163	 33.62	0	1276505..1277209	+	234	21282892	-	MW1163	-	hypothetical protein
1164	 33.21	0	1277314..1278141	+	275	21282893	-	MW1164	-	hypothetical protein
1165	 30.53	0	1278160..1278552	+	130	21282894	-	MW1165	-	hypothetical protein
1166	 30.74	0	1278586..1279164	+	192	21282895	pgsA	MW1166	-	phosphatidylglycerophosphate synthase
1167	 30.82	0	1279391..1280542	+	383	21282896	cinA	MW1167	-	competence-damage inducible protein cinA
1168	 37.07	+1	1280707..1281750	+	347	21282897	recA	MW1168	-	recombinase A
1169	 35.77	0	1282104..1283663	+	519	21282898	-	MW1169	-	phosphodiesterase
1170	 27.31	-1	1283960..1284175	-	71	21282899	-	MW1170	-	hypothetical protein
1171	 34.59	0	1284349..1285146	+	265	21282900	-	MW1171	-	hypothetical protein
1172	 35.04	0	1285286..1287046	+	586	21282901	-	MW1172	-	hypothetical protein
1173	 33.79	0	1287047..1287913	+	288	21282902	-	MW1173	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
1174	 30.61	0	1288007..1288300	+	97	21282903	-	MW1174	-	hypothetical protein
1175	 32.82	0	1288434..1289978	+	514	21282904	-	MW1175	-	hypothetical protein
1176	 29.78	0	1289979..1290344	+	121	21282905	-	MW1176	-	hypothetical protein
1177	 33.94	0	1290371..1290862	+	163	21282906	-	MW1177	-	hypothetical protein
1178	 32.11	0	1291165..1293783	+	872	21282907	mutS	MW1178	-	DNA mismatch repair protein
1179	 31.59	0	1293796..1295805	+	669	21282908	mutL	MW1179	-	DNA mismatch repair protein
1180	 29.21	-1	1295820..1296353	+	177	21282909	glpP	MW1180	-	glycerol uptake operon antiterminator regulatory protein
1181	 22.22	-2	1296390..1296479	-	29	21282910	-	MW1181	-	hypothetical protein
1182	 37.73	+1	1296828..1297646	+	272	21282911	glpF	MW1182	-	glycerol uptake facilitator
1183	 36.81	+1	1297775..1299271	+	498	21282912	glpK	MW1183	-	glycerol kinase
1184	 34.26	0	1299381..1301102	+	573	21282913	glpD	MW1184	-	aerobic glycerol-3-phosphate dehydrogenase
1185	 30.27	0	1301252..1302166	+	304	21282914	-	MW1185	-	hypothetical protein
1186	 31.84	0	1302184..1303119	+	311	21282915	miaA	MW1186	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1187	 34.19	0	1303134..1303367	+	77	21282916	-	MW1187	-	hypothetical protein
1188	 33.54	0	1303589..1304065	-	158	21282917	bsaA	MW1188	-	glutathione peroxidase
1189	 31.40	0	1304177..1305415	+	412	21282918	-	MW1189	-	hypothetical protein
1190	 34.71	0	1305434..1306672	+	412	21282919	-	MW1190	-	hypothetical protein
1191	 32.52	0	1306916..1307284	+	122	21282920	glnR	MW1191	-	glutamine synthetase repressor
1192	 35.27	0	1307303..1308643	+	446	21282921	glnA	MW1192	-	glutamine-ammonia ligase
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.