IslandPathversion 1.0

IslandPath Analysis: Staphylococcus aureus subsp. aureus MW2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.85 STD DEV: 3.41
Staphylococcus aureus subsp. aureus MW2, complete genome - 1..2820462
2632 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1022	 34.79	0	1116802..1119204	+	800	21282751	pheT	MW1022	-	Phe-tRNA synthetase beta chain
1023	 32.91	0	1119439..1120377	-	312	21282752	-	MW1023	-	ribonuclease HIII
1024	 32.58	0	1120747..1121013	+	88	21282753	-	MW1024	-	hypothetical protein
1025	 28.54	-1	1121014..1121535	+	173	21282754	-	MW1025	-	hypothetical protein
1026	 32.57	0	1121608..1123320	+	570	21282755	-	MW1026	-	hypothetical protein
1027	 33.04	0	1123330..1125678	+	782	21282756	mutS2	MW1027	-	recombination and DNA strand exchange inhibitor protein
1028	 33.97	0	1125851..1126165	+	104	21282757	trxA	MW1028	-	thioredoxin
1029	 33.05	0	1126489..1128270	+	593	21282758	uvrC	MW1029	-	excinuclease ABC subunit C
1030	 32.03	0	1128594..1129208	+	204	21282759	sdhC	MW1030	-	succinate dehydrogenase cytochrome b-558
1031	 38.60	+1	1129260..1131026	+	588	21282760	sdhA	MW1031	-	succinate dehydrogenase flavoprotein subunit
1032	 35.42	0	1131026..1131841	+	271	21282761	sdhB	MW1032	-	succinate dehydrogenase iron-sulfur subunit
1033	 36.58	+1	1132077..1132877	+	266	21282762	murI	MW1033	-	glutamate racemase
1034	 32.82	0	1132889..1133476	+	195	21282763	-	MW1034	-	hypothetical protein
1035	 31.35	0	1133469..1133972	+	167	21282764	-	MW1035	-	hypothetical protein
1036	 23.19	-2	1134130..1134267	+	45	21282765	-	MW1036	-	hypothetical protein
1037	 29.56	0	1134461..1134778	+	105	21282766	-	MW1037	-	hypothetical protein
1038	 32.33	0	1135148..1135546	-	132	21282767	-	MW1038	-	formyl peptide receptor-like 1 inhibitory protein
1039	 26.04	-2	1136217..1136723	+	168	21282768	-	MW1039	-	hypothetical protein
1040	 30.72	0	1136982..1137479	+	165	21282769	-	MW1040	-	fibrinogen-binding protein
1041	 28.77	-1	1137633..1137983	+	116	21282770	-	MW1041	-	hypothetical protein
1042	 27.96	-1	1138748..1138933	-	61	21282771	-	MW1042	-	hypothetical protein
1043	 29.49	0	1139552..1139785	-	77	21282772	-	MW1043	-	hypothetical protein
1044	 33.96	0	1140262..1141221	-	319	21282773	-	MW1044	-	alpha-hemolysin
1045	 23.13	-2	1141894..1142040	+	48	21282774	-	MW1045	-	hypothetical protein
1046	 28.28	-1	1142024..1142221	+	65	21282775	-	MW1046	-	hypothetical protein
1047	 30.82	0	1142778..1143494	-	238	21282776	-	MW1047	-	superantigen-like protein
1048	 29.48	0	1143602..1144327	-	241	21282777	-	MW1048	-	superantigen-like protein
1049	 30.03	0	1144422..1145147	-	241	21282778	-	MW1049	-	superantigen-like protein
1050	 33.73	0	1145585..1146586	+	333	21282779	argF	MW1050	-	ornithine carbamoyltransferase
1051	 33.76	0	1146609..1147541	+	310	21282780	-	MW1051	-	carbamate kinase
1052	 35.90	0	1147713..1149269	+	518	21282781	-	MW1052	-	hypothetical protein
1053	 29.39	-1	1149576..1149803	+	75	21282782	-	MW1053	-	hypothetical protein
1054	 31.75	0	1150109..1151056	-	315	21282783	-	MW1054	-	hypothetical protein
1055	 28.04	-1	1151305..1151493	+	62	21282784	-	MW1055	-	hypothetical protein
1056	 34.81	0	1152405..1152539	+	44	21282785	-	MW1056	-	hypothetical protein
1057	 40.00	+2	1152596..1152730	+	44	21282786	-	MW1057	-	hypothetical protein
1058	 29.84	0	1152863..1153549	+	228	21282787	-	MW1058	-	hypothetical protein
1059	 32.43	0	1153658..1154098	-	146	21282788	-	MW1059	-	hypothetical protein
1060	 32.28	0	1154293..1155906	+	537	21282789	-	MW1060	-	hypothetical protein
1061	 33.80	0	1156050..1156481	+	143	21282790	-	MW1061	-	cell division protein MraZ
1062	 36.11	0	1156497..1157432	+	311	21282791	-	MW1062	-	hypothetical protein
1063	 32.09	0	1157446..1157847	+	133	21282792	ftsL	MW1063	-	cell division protein
1064	 34.50	0	1157828..1160062	+	744	21282793	pbpA	MW1064	-	penicillin-binding protein 1
1065	 32.40	0	1160354..1161319	+	321	21282794	mraY	MW1065	-	phospho-N-muramic acid-pentapeptide translocase
1066	 32.37	0	1161321..1162670	+	449	21282795	murD	MW1066	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1067	 30.76	0	1162686..1164005	+	439	21282796	div1b	MW1067	-	hypothetical protein
1068	 32.20	0	1164111..1165523	+	470	21282797	ftsA	MW1068	-	cell division protein
1069	 38.45	+1	1165556..1166728	+	390	21282798	ftsZ	MW1069	-	cell division protein FtsZ
1070	 31.94	0	1166988..1167779	+	263	21282799	-	MW1070	-	hypothetical protein
1071	 33.33	0	1167797..1168471	+	224	21282800	-	MW1071	-	hypothetical protein
1072	 35.11	0	1168468..1169031	+	187	21282801	-	MW1072	-	hypothetical protein
1073	 26.80	-1	1169043..1169333	+	96	21282802	-	MW1073	-	hypothetical protein
1074	 30.61	0	1169416..1170222	+	268	21282803	-	MW1074	-	hypothetical protein
1075	 34.47	0	1170246..1170863	+	205	21282804	-	MW1075	-	hypothetical protein
1076	 35.00	0	1171084..1173837	+	917	21282805	ileS	MW1076	-	isoleucyl-tRNA synthetase
1077	 32.21	0	1174127..1174924	+	265	21282806	-	MW1077	-	hypothetical protein
1078	 29.57	0	1175411..1175596	+	61	21282807	tnp	MW1078	-	putative transposase
1079	 26.83	-1	1175777..1176268	+	163	21282808	lsp	MW1079	-	lipoprotein signal peptidase
1080	 33.77	0	1176268..1177185	+	305	21282809	-	MW1080	-	hypothetical protein
1081	 34.28	0	1177585..1178112	+	175	21282810	pyrR	MW1081	-	pyrimidine regulatory protein PyrR
1082	 35.24	0	1178330..1179637	+	435	21282811	pyrP	MW1082	-	uracil permease
1083	 31.63	0	1179665..1180546	+	293	21282812	pyrB	MW1083	-	aspartate carbamoyltransferase catalytic subunit
1084	 35.76	0	1180564..1181838	+	424	21282813	pyrC	MW1084	-	dihydroorotase
1085	 35.42	0	1181840..1182940	+	366	21282814	pyrAA	MW1085	-	carbamoyl phosphate synthase small subunit
1086	 35.73	0	1182933..1186106	+	1057	21282815	carB	MW1086	-	carbamoyl phosphate synthase large subunit
1087	 33.77	0	1186216..1186908	+	230	21282816	pyrF	MW1087	-	orotidine-5-phosphate decarboxylase
1088	 33.17	0	1186908..1187519	+	203	21282817	pyrE	MW1088	-	orotate phosphoribosyltransferase
1089	 26.29	-1	1187549..1187761	+	70	21282818	-	MW1089	-	hypothetical protein
1090	 33.83	0	1188198..1188599	+	133	21282819	-	MW1090	-	hypothetical protein
1091	 31.86	0	1188862..1190559	-	565	21282820	-	MW1091	-	hypothetical protein
1092	 33.49	0	1190834..1191457	+	207	21282821	gmk	MW1092	-	hypothetical protein
1093	 32.42	0	1191457..1191675	+	72	21282822	-	MW1093	-	hypothetical protein
1094	 34.83	0	1191891..1193090	+	399	21282823	-	MW1094	-	hypothetical protein
1095	 34.83	0	1193090..1195498	+	802	21282824	priA	MW1095	-	primosomal protein
1096	 30.92	0	1196001..1196954	+	317	21282825	-	MW1096	-	hypothetical protein
1097	 30.82	0	1197117..1197395	-	92	21282826	-	MW1097	-	hypothetical protein
1098	 33.74	0	1197619..1198107	+	162	21282827	-	MW1098	-	hypothetical protein
1099	 34.94	0	1198100..1199035	+	311	21282828	-	MW1099	-	methionyl-tRNA formyltransferase
1100	 32.87	0	1199032..1200339	+	435	21282829	-	MW1100	-	hypothetical protein
1101	 33.88	0	1200342..1201436	+	364	21282830	-	MW1101	-	hypothetical protein
1102	 32.53	0	1201443..1202186	+	247	21282831	-	MW1102	-	hypothetical protein
1103	 33.63	0	1202183..1204177	+	664	21282832	-	MW1103	-	hypothetical protein
1104	 31.51	0	1204405..1205280	+	291	21282833	-	MW1104	-	hypothetical protein
1105	 33.02	0	1205281..1205925	+	214	21282834	cfxE	MW1105	-	hypothetical protein
1106	 32.87	0	1205932..1206573	+	213	21282835	-	MW1106	-	hypothetical protein
1107	 37.57	+1	1206954..1207142	-	62	21282836	rpmB	MW1107	-	50S ribosomal protein L28
1108	 32.80	0	1207585..1207959	+	124	21282837	-	MW1108	-	hypothetical protein
1109	 34.06	0	1207974..1209620	+	548	21282838	-	MW1109	-	hypothetical protein
1110	 33.77	0	1209810..1211870	+	686	21282839	recG	MW1110	-	ATP-dependent DNA helicase
1111	 31.54	0	1212088..1212645	+	185	21282840	-	MW1111	-	fatty acid biosynthesis transcriptional regulator
1112	 34.95	0	1212650..1213636	+	328	21282841	plsX	MW1112	-	putative glycerol-3-phosphate acyltransferase PlsX
1113	 33.55	0	1213629..1214555	+	308	21282842	fabD	MW1113	-	malonyl CoA-acyl carrier protein transacylase
1114	 36.57	+1	1214542..1215282	+	246	21282843	fabG	MW1114	-	3-oxoacyl- reductase (acyl-carrier protein)
1115	 34.19	0	1215716..1215949	+	77	21282844	hmrB	MW1115	-	acyl carrier protein
1116	 34.15	0	1216065..1216796	+	243	21282845	rnc	MW1116	-	RNase III
1117	 32.16	0	1216943..1220509	+	1188	21282846	smc	MW1117	-	chromosome segregation SMC protein
1118	 34.61	0	1220509..1221759	+	416	21282847	-	MW1118	-	signal recognition particle
1119	 27.03	-1	1221746..1222078	+	110	21282848	-	MW1119	-	hypothetical protein
1120	 34.87	0	1222104..1223471	+	455	21282849	ffh	MW1120	-	hypothetical protein
1121	 36.23	0	1223906..1224181	+	91	21282850	rpsP	MW1121	-	30S ribosomal protein S16
32.85	MEAN

3.41	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.