IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
917	 38.79	0	947803..949305	+	500	22537102	pyk	SAG0941	-	pyruvate kinase
918	 30.65	-1	949476..950033	+	185	22537103	-	SAG0942	-	signal peptidase I, putative
919	 21.53	-2	950047..950190	-	47	22537104	-	SAG0943	-	hypothetical protein
920	 37.41	0	950302..952116	+	604	22537105	glmS	SAG0944	-	D-fructose-6-phosphate amidotransferase
921	 37.92	0	952293..953426	+	377	22537106	-	SAG0945	-	IS1548 transposase
922	 34.85	0	953605..953934	+	109	22537107	phnA	SAG0946	-	phnA protein
923	 33.96	0	954069..954710	+	213	22537108	-	SAG0947	-	amino acid ABC transporter, permease protein
924	 34.60	0	954720..955349	+	209	22537109	-	SAG0948	-	amino acid ABC transporter, ATP-binding protein
925	 29.84	-1	955366..956196	+	276	22537110	-	SAG0949	-	amino acid ABC transporter, amino acid-binding protein
926	 38.46	0	956280..956513	-	77	161485614	rpsT	SAG0950	-	30S ribosomal protein S20
927	 29.86	-1	956582..957502	-	306	22537112	coaA	SAG0951	-	pantothenate kinase
928	 33.16	0	957608..958198	+	196	22537113	-	SAG0952	-	hypothetical protein
929	 36.41	0	958524..958913	+	129	22537114	cdd	SAG0953	-	cytidine deaminase
930	 38.00	0	958978..960027	+	349	22537115	-	SAG0954	-	protein of unknown function/lipoprotein, putative
931	 36.98	0	960172..961707	+	511	22537116	-	SAG0955	-	sugar ABC transporter, ATP-binding protein
932	 37.66	0	961700..962761	+	353	22537117	-	SAG0956	-	sugar ABC transporter, permease protein, putative
933	 36.05	0	962763..963719	+	318	22537118	-	SAG0957	-	sugar ABC transporter, permease protein, putative
934	 36.83	0	963924..965294	+	456	22537119	nox-2	SAG0958	-	NADH oxidase
935	 39.80	+1	965415..966404	-	329	22537120	ldh	SAG0959	-	L-lactate dehydrogenase
936	 38.46	0	966643..969102	+	819	22537121	gyrA	SAG0960	-	DNA gyrase subunit A
937	 34.14	0	969109..969852	+	247	22537122	srtA	SAG0961	-	sortase SrtA
938	 36.96	0	969868..970281	+	137	22537123	-	SAG0962	-	glyoxylase family protein
939	 32.50	0	970434..971396	+	320	22537124	-	SAG0963	-	hypothetical protein
940	 33.95	0	971459..972586	-	375	22537125	-	SAG0964	-	Na+/H+ exchanger family protein
941	 39.06	0	972846..973229	+	127	22537126	-	SAG0965	-	IS1381 transposase protein A
942	 38.46	0	973262..973651	+	129	22537127	-	SAG0966	-	IS1381 transposase protein B
943	 39.99	+1	973717..975279	-	520	22537128	guaA	SAG0967	-	bifunctional GMP synthase/glutamine amidotransferase protein
944	 36.48	0	975492..976190	+	232	22537129	-	SAG0968	-	GntR family transcriptional regulator
945	 38.65	0	976304..977638	+	444	22537130	gid	SAG0969	-	tRNA (uracil-5-)-methyltransferase Gid
946	 30.51	-1	977716..978459	+	247	22537131	-	SAG0970	-	acetyltransferase
947	 33.69	0	978592..979440	+	282	22537132	-	SAG0971	-	protein of unknown function/lipoprotein, putative
948	 34.06	0	980127..981089	+	320	22537133	-	SAG0973	-	nisin-resistance protein, putative
949	 34.79	0	981115..981867	+	250	22537134	-	SAG0974	-	ABC transporter, ATP-binding protein
950	 31.39	-1	981869..983824	+	651	22537135	-	SAG0975	-	ABC transporter, permease protein, putative
951	 32.44	0	983934..984602	+	222	22537136	-	SAG0976	-	DNA-binding response regulator
952	 32.69	0	984599..985537	+	312	22537137	-	SAG0977	-	sensor histidine kinase
953	 34.73	0	985580..986650	-	356	22537138	xerS	SAG0978	-	site-specific tyrosine recombinase XerS
954	 34.18	0	987103..988764	+	553	22537139	-	SAG0979	-	ABC transporter, substrate-binding protein
955	 32.30	0	988797..989570	-	257	22537140	-	SAG0980	-	hypothetical protein
956	 35.52	0	989560..990246	-	228	22537141	-	SAG0981	-	satD protein
957	 39.40	+1	990313..991878	-	521	22537142	ffh	SAG0982	-	signal recognition particle protein Ffh
958	 32.43	0	991896..992228	-	110	22537143	-	SAG0983	-	hypothetical protein
959	 33.33	0	992317..993630	-	437	22537144	-	SAG0984	-	sensor histidine kinase CiaH
960	 34.07	0	993614..994294	-	226	22537145	ciaR	SAG0985	-	DNA-binding response regulator CiaR
961	 36.04	0	994456..997005	-	849	22537146	pepN	SAG0986	-	aminopeptidase N
962	 36.24	0	997151..997804	-	217	22537147	phoU	SAG0987	-	phosphate transport system regulatory protein PhoU
963	 37.81	0	997838..998596	-	252	22537148	-	SAG0988	-	phosphate ABC transporter, ATP-binding protein PstB, putative
964	 36.32	0	998608..999411	-	267	22537149	-	SAG0989	-	phosphate ABC transporter, ATP-binding protein PstB, putative
965	 39.19	0	999423..1000310	-	295	22537150	-	SAG0990	-	phosphate ABC transporter, permease protein PstA, putative
966	 36.60	0	1000300..1001217	-	305	22537151	-	SAG0991	-	phosphate ABC transporter, permease protein
967	 37.05	0	1001263..1002123	-	286	22537152	-	SAG0992	-	phosphate ABC transporter, phosphate-binding protein
968	 36.54	0	1002308..1003618	-	436	22537153	-	SAG0993	-	NOL1/NOP2/sun family protein
969	 35.16	0	1003686..1004450	-	254	22537154	-	SAG0994	-	inositol monophosphatase family protein
970	 33.69	0	1004440..1004721	-	93	22537155	-	SAG0995	-	hypothetical protein
971	 35.27	0	1004714..1005127	-	137	22537156	spxA	SAG0996	-	transcriptional regulator Spx
972	 33.87	0	1005170..1006102	-	310	22537157	-	SAG0997	-	bifunctional riboflavin kinase/FMN adenylyltransferase
973	 35.25	0	1006115..1006999	-	294	22537158	truB	SAG0998	-	tRNA pseudouridine synthase B
974	 33.56	0	1007091..1007522	-	143	22537159	-	SAG0999	-	acetyltransferase
975	 32.63	0	1007535..1008806	-	423	22537160	-	SAG1000	-	hypothetical protein
976	 37.06	0	1008840..1009430	-	196	22537161	-	SAG1001	-	hypothetical protein
977	 37.54	0	1009537..1010415	-	292	22537162	-	SAG1002	-	protease, putative
978	 32.61	0	1010521..1013151	-	876	22537163	-	SAG1003	-	permease, putative
979	 38.18	0	1013163..1013864	-	233	22537164	-	SAG1004	-	ABC transporter, ATP-binding protein
980	 36.26	0	1014001..1016121	-	706	22537165	topA	SAG1005	-	DNA topoisomerase I
981	 34.28	0	1016216..1017058	-	280	22537166	dprA	SAG1006	-	DprA/SMF protein, putative DNA processing factor
982	 35.18	0	1017196..1018224	-	342	22537167	-	SAG1007	-	iron-compound ABC transporter, iron-compound-binding protein
983	 33.20	0	1018286..1019047	-	253	22537168	-	SAG1008	-	iron compound ABC transporter, ATP-binding protein
984	 31.28	-1	1019044..1020018	-	324	22537169	-	SAG1009	-	iron compound ABC transporter, permease protein
985	 35.41	0	1020015..1020977	-	320	22537170	-	SAG1010	-	iron compound ABC transporter, permease protein
986	 37.89	0	1021216..1021764	-	182	22537171	-	SAG1011	-	acetyltransferase
987	 33.60	0	1021785..1022546	-	253	22537172	rnhB	SAG1012	-	ribonuclease HII
988	 35.92	0	1022533..1023384	-	283	22537173	rbgA	SAG1013	-	ribosomal biogenesis GTPase
989	 36.30	0	1023660..1024232	-	190	22537174	-	SAG1014	-	hypothetical protein
990	 36.50	0	1024433..1025917	-	494	22537175	-	SAG1015	-	carbon starvation protein CstA, putative
991	 35.92	0	1026073..1026807	-	244	22537176	-	SAG1016	-	response regulator
992	 34.77	0	1026819..1028558	-	579	22537177	-	SAG1017	-	sensor histidine kinase, putative
993	 26.83	-2	1029094..1029216	-	40	22537178	-	SAG1018	-	putative lipoprotein
994	 34.17	0	1029739..1029858	-	39	22537179	-	SAG1019	-	hypothetical protein
995	 25.00	-2	1030102..1030785	-	227	22537180	-	SAG1020	-	putative lipoprotein
996	 36.42	0	1030871..1031194	-	107	22537181	-	SAG1021	-	hypothetical protein
997	 32.58	0	1031542..1032075	-	177	22537182	-	SAG1022	-	hypothetical protein
998	 23.81	-2	1032087..1032233	-	48	22537183	-	SAG1023	-	hypothetical protein
999	 27.36	-2	1032230..1032781	-	183	22537184	-	SAG1024	-	putative lipoprotein
1000	 30.44	-1	1032786..1033235	-	149	22537185	-	SAG1025	-	hypothetical protein
1001	 27.06	-2	1035253..1035507	-	84	22537186	-	SAG1027	-	hypothetical protein
1002	 21.15	-2	1035528..1036118	-	196	22537187	-	SAG1028	-	hypothetical protein
1003	 38.24	0	1036132..1036437	-	101	22537188	-	SAG1029	-	hypothetical protein
1004	 34.32	0	1036566..1037480	-	304	22537189	-	SAG1030	-	hypothetical protein
1005	 29.20	-1	1037483..1037845	-	120	22537190	-	SAG1031	-	hypothetical protein
1006	 40.31	+1	1037950..1038207	-	85	22537191	-	SAG1032	-	hypothetical protein
1007	 39.80	+1	1038221..1042150	-	1309	22537192	-	SAG1033	-	FtsK/SpoIIIE family protein
1008	 30.36	-1	1042461..1042628	-	55	22537193	-	SAG1034	-	hypothetical protein
1009	 33.02	0	1042635..1043909	-	424	22537194	-	SAG1035	-	hypothetical protein
1010	 32.10	0	1043909..1044151	-	80	22537195	-	SAG1036	-	hypothetical protein
1011	 27.64	-2	1044135..1044608	-	157	22537196	-	SAG1037	-	hypothetical protein
1012	 33.20	0	1044617..1047628	-	1003	22537197	-	SAG1038	-	phage infection protein, putative
1013	 34.36	0	1047710..1048000	-	96	22537198	-	SAG1039	-	hypothetical protein
1014	 32.69	0	1048117..1048899	-	260	22537199	-	SAG1040	-	hypothetical protein
1015	 30.25	-1	1048896..1049219	-	107	22537200	-	SAG1041	-	hypothetical protein
1016	 36.66	0	1049346..1052528	-	1060	22537201	carB	SAG1042	-	carbamoyl phosphate synthase large subunit
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.