IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
856	 40.56	+1	885368..886336	+	322	22537041	-	SAG0878	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, alpha subunit
857	 39.84	+1	886411..887409	+	332	22537042	-	SAG0879	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, beta subunit
858	 38.30	0	887536..888924	+	462	22537043	-	SAG0880	-	branched-chain alpha-keto acid dehydrogenase subunit E2
859	 40.16	+1	888984..890741	+	585	22537044	-	SAG0881	-	acetoin dehydrogenase, thymine PPi dependent, E3 component, dihydrolipoamide dehydrogenase
860	 35.35	0	890839..891828	+	329	22537045	lplA-1	SAG0882	-	lipoate-protein ligase A
861	 35.11	0	891936..892721	-	261	22537046	-	SAG0883	-	cobyric acid synthase, putative
862	 37.95	0	892721..894064	-	447	22537047	-	SAG0884	-	mur ligase family protein
863	 35.56	0	894204..895055	+	283	22537048	-	SAG0885	-	hypothetical protein
864	 33.23	0	895058..896017	+	319	22537049	-	SAG0886	-	hypothetical protein
865	 39.17	0	896071..897423	+	450	22537050	-	SAG0887	-	phosphoglucomutase/phosphomannomutase family protein
866	 31.45	-1	897546..897917	+	123	22537051	-	SAG0888	-	hypothetical protein
867	 36.75	0	897942..898322	+	126	22537052	-	SAG0889	-	hypothetical protein
868	 34.92	0	898414..899544	+	376	22537053	-	SAG0890	-	coproporphyrinogen III oxidase
869	 32.38	0	899548..900285	+	245	22537054	-	SAG0891	-	hypothetical protein
870	 35.80	0	900286..901056	+	256	22537055	-	SAG0892	-	HAD superfamily hydrolase
871	 29.07	-1	901046..901702	+	218	22537056	-	SAG0893	-	hypothetical protein
872	 34.33	0	902090..906202	+	1370	22537057	-	SAG0894	-	hypothetical protein
873	 34.71	0	906204..907073	+	289	22537058	-	SAG0895	-	lipoyl-binding domain-containing protein
874	 35.78	0	907085..907411	+	108	22537059	-	SAG0896	-	oxidoreductase, putative
875	 30.78	-1	907398..908063	+	221	22537060	-	SAG0897	-	hypothetical protein
876	 40.48	+1	908175..908426	+	83	22537061	-	SAG0898	-	hypothetical protein
877	 37.93	0	908439..908612	+	57	22537062	-	SAG0899	-	hypothetical protein
878	 39.77	+1	908847..909017	+	56	22537063	-	SAG0900	-	hypothetical protein
879	 39.58	+1	909099..909482	+	127	22537064	-	SAG0901	-	hypothetical protein
880	 39.13	0	909460..909597	+	45	22537065	-	SAG0902	-	hypothetical protein
881	 38.52	0	909601..909735	+	44	22537066	-	SAG0903	-	hypothetical protein
882	 35.67	0	910104..910274	+	56	22537067	-	SAG0904	-	hypothetical protein
883	 40.77	+1	910407..910823	+	138	22537068	ndk	SAG0905	-	nucleoside diphosphate kinase
884	 37.59	0	910959..912791	+	610	22537069	lepA	SAG0906	-	GTP-binding protein LepA
885	 33.90	0	913038..915671	+	877	22537070	-	SAG0907	-	protein of unknown function/lipoprotein, putative
886	 34.97	0	915819..916430	+	203	22537071	-	SAG0908	-	HD domain-containing protein
887	 32.90	0	916439..916903	+	154	22537072	-	SAG0909	-	acetyltransferase
888	 38.39	0	916903..917337	+	144	22537073	-	SAG0910	-	methionine sulfoxide reductase B
889	 37.49	0	917489..920281	+	930	22537074	-	SAG0911	-	cation transporter E1-E2 family ATPase
890	 31.07	-1	920281..921384	+	367	22537075	-	SAG0912	-	hypothetical protein
891	 34.43	0	921505..922143	-	212	22537076	cat	SAG0913	-	chloramphenicol acetyltransferase
892	 33.01	0	922854..923465	+	203	22537077	-	SAG0914	-	hypothetical protein
893	 37.27	0	923639..924856	-	405	22537078	-	SAG0915	-	Tn916, transposase
894	 35.29	0	924938..925141	-	67	22537079	-	SAG0916	-	Tn916, excisionase
895	 42.46	+1	925125..925376	+	83	22537080	-	SAG0917	-	Tn916 hypothetical protein
896	 37.23	0	925602..925832	-	76	22537081	-	SAG0918	-	Tn916 hypothetical protein
897	 38.61	0	925829..926302	-	157	22537082	-	SAG0919	-	Tn916 hypothetical protein
898	 29.17	-1	926480..926551	-	23	22537083	-	SAG0920	-	Tn916 hypothetical protein
899	 36.44	0	926756..927109	+	117	22537084	-	SAG0921	-	Tn916, transcriptional regulator, putative
900	 34.95	0	927169..927354	-	61	22537085	-	SAG0922	-	Tn916 hypothetical protein
901	 36.04	0	927455..929374	-	639	22537086	tetM	SAG0923	-	tetracycline resistance protein
902	 32.18	0	929390..929476	-	28	22537087	-	SAG0924	-	Tn916, tetM leader peptide
903	 37.41	0	929751..930683	-	310	22537088	-	SAG0925	-	Tn916 hypothetical protein
904	 42.71	+1	930680..931681	-	333	22537089	-	SAG0926	-	Tn916, NLP/P60 family protein
905	 41.74	+1	931678..933855	-	725	22537090	-	SAG0927	-	hypothetical protein
906	 38.86	0	936288..936794	-	168	22537091	-	SAG0929	-	Tn916 hypothetical protein
907	 40.36	+1	936769..937266	-	165	22537092	-	SAG0930	-	Tn916 hypothetical protein
908	 37.39	0	937383..937604	-	73	22537093	-	SAG0931	-	Tn916 hypothetical protein
909	 41.13	+1	937647..938852	-	401	22537094	-	SAG0932	-	Tn916, transcriptional regulator, putative
910	 39.97	+1	939030..940415	-	461	22537095	-	SAG0933	-	Tn916, FtsK/SpoIIIE family protein
911	 41.60	+1	940444..940830	-	128	22537096	-	SAG0934	-	Tn916 hypothetical protein
912	 40.32	+1	940846..941160	-	104	22537097	-	SAG0935	-	Tn916 hypothetical protein
913	 33.33	0	941183..941302	-	39	22537098	-	SAG0936	-	Tn916 hypothetical protein
914	 35.23	0	943034..943402	-	122	22537099	-	SAG0938	-	GntR family transcriptional regulator
915	 34.43	0	943547..946651	+	1034	22537100	dnaE	SAG0939	-	DNA polymerase III DnaE
916	 43.79	+2	946732..947754	+	340	22537101	pfkA	SAG0940	-	6-phosphofructokinase
917	 38.79	0	947803..949305	+	500	22537102	pyk	SAG0941	-	pyruvate kinase
918	 30.65	-1	949476..950033	+	185	22537103	-	SAG0942	-	signal peptidase I, putative
919	 21.53	-2	950047..950190	-	47	22537104	-	SAG0943	-	hypothetical protein
920	 37.41	0	950302..952116	+	604	22537105	glmS	SAG0944	-	D-fructose-6-phosphate amidotransferase
921	 37.92	0	952293..953426	+	377	22537106	-	SAG0945	-	IS1548 transposase
922	 34.85	0	953605..953934	+	109	22537107	phnA	SAG0946	-	phnA protein
923	 33.96	0	954069..954710	+	213	22537108	-	SAG0947	-	amino acid ABC transporter, permease protein
924	 34.60	0	954720..955349	+	209	22537109	-	SAG0948	-	amino acid ABC transporter, ATP-binding protein
925	 29.84	-1	955366..956196	+	276	22537110	-	SAG0949	-	amino acid ABC transporter, amino acid-binding protein
926	 38.46	0	956280..956513	-	77	161485614	rpsT	SAG0950	-	30S ribosomal protein S20
927	 29.86	-1	956582..957502	-	306	22537112	coaA	SAG0951	-	pantothenate kinase
928	 33.16	0	957608..958198	+	196	22537113	-	SAG0952	-	hypothetical protein
929	 36.41	0	958524..958913	+	129	22537114	cdd	SAG0953	-	cytidine deaminase
930	 38.00	0	958978..960027	+	349	22537115	-	SAG0954	-	protein of unknown function/lipoprotein, putative
931	 36.98	0	960172..961707	+	511	22537116	-	SAG0955	-	sugar ABC transporter, ATP-binding protein
932	 37.66	0	961700..962761	+	353	22537117	-	SAG0956	-	sugar ABC transporter, permease protein, putative
933	 36.05	0	962763..963719	+	318	22537118	-	SAG0957	-	sugar ABC transporter, permease protein, putative
934	 36.83	0	963924..965294	+	456	22537119	nox-2	SAG0958	-	NADH oxidase
935	 39.80	+1	965415..966404	-	329	22537120	ldh	SAG0959	-	L-lactate dehydrogenase
936	 38.46	0	966643..969102	+	819	22537121	gyrA	SAG0960	-	DNA gyrase subunit A
937	 34.14	0	969109..969852	+	247	22537122	srtA	SAG0961	-	sortase SrtA
938	 36.96	0	969868..970281	+	137	22537123	-	SAG0962	-	glyoxylase family protein
939	 32.50	0	970434..971396	+	320	22537124	-	SAG0963	-	hypothetical protein
940	 33.95	0	971459..972586	-	375	22537125	-	SAG0964	-	Na+/H+ exchanger family protein
941	 39.06	0	972846..973229	+	127	22537126	-	SAG0965	-	IS1381 transposase protein A
942	 38.46	0	973262..973651	+	129	22537127	-	SAG0966	-	IS1381 transposase protein B
943	 39.99	+1	973717..975279	-	520	22537128	guaA	SAG0967	-	bifunctional GMP synthase/glutamine amidotransferase protein
944	 36.48	0	975492..976190	+	232	22537129	-	SAG0968	-	GntR family transcriptional regulator
945	 38.65	0	976304..977638	+	444	22537130	gid	SAG0969	-	tRNA (uracil-5-)-methyltransferase Gid
946	 30.51	-1	977716..978459	+	247	22537131	-	SAG0970	-	acetyltransferase
947	 33.69	0	978592..979440	+	282	22537132	-	SAG0971	-	protein of unknown function/lipoprotein, putative
948	 34.06	0	980127..981089	+	320	22537133	-	SAG0973	-	nisin-resistance protein, putative
949	 34.79	0	981115..981867	+	250	22537134	-	SAG0974	-	ABC transporter, ATP-binding protein
950	 31.39	-1	981869..983824	+	651	22537135	-	SAG0975	-	ABC transporter, permease protein, putative
951	 32.44	0	983934..984602	+	222	22537136	-	SAG0976	-	DNA-binding response regulator
952	 32.69	0	984599..985537	+	312	22537137	-	SAG0977	-	sensor histidine kinase
953	 34.73	0	985580..986650	-	356	22537138	xerS	SAG0978	-	site-specific tyrosine recombinase XerS
954	 34.18	0	987103..988764	+	553	22537139	-	SAG0979	-	ABC transporter, substrate-binding protein
955	 32.30	0	988797..989570	-	257	22537140	-	SAG0980	-	hypothetical protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.