IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
821	 34.23	0	840847..841518	+	223	22537006	thiE	SAG0842	-	thiamine-phosphate pyrophosphorylase
822	 40.32	+1	841645..842904	+	419	22537007	murA-1	SAG0843	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
823	 34.77	0	843006..843560	+	184	22537008	-	SAG0844	-	acetyltransferase
824	 34.97	0	843553..844836	+	427	22537009	-	SAG0845	-	CBS domain-containing protein
825	 40.19	+1	844859..845719	+	286	22537010	map	SAG0846	-	methionine aminopeptidase
826	 33.33	0	845721..846641	+	306	22537011	-	SAG0847	-	ribonuclease BN, putative
827	 28.73	-1	846658..847113	-	151	22537012	-	SAG0848	-	GtrA family protein
828	 34.31	0	847295..847804	+	169	22537013	-	SAG0849	-	hypothetical protein
829	 37.06	0	847944..849902	+	652	22537014	ligA	SAG0850	-	NAD-dependent DNA ligase LigA
830	 35.29	0	849914..850933	+	339	22537015	-	SAG0851	-	putative lipid kinase
831	 35.51	0	850937..853237	+	766	22537016	-	SAG0852	-	pullulanase, putative
832	 35.10	0	853443..855311	+	622	22537017	glgB	SAG0853	-	glycogen branching enzyme
833	 37.54	0	855353..856492	+	379	22537018	glgC	SAG0854	-	glucose-1-phosphate adenylyltransferase
834	 35.43	0	857611..859041	+	476	22537019	glgA	SAG0856	-	glycogen synthase
835	 39.80	+1	859373..859573	+	66	22537020	atpE	SAG0857	-	F0F1 ATP synthase subunit C
836	 32.64	0	859606..860322	+	238	22537021	atpB	SAG0858	-	F0F1 ATP synthase subunit A
837	 34.54	0	860340..860837	+	165	22537022	atpF	SAG0859	-	F0F1 ATP synthase subunit B
838	 32.40	0	860837..861373	+	178	22537023	atpH	SAG0860	-	F0F1 ATP synthase subunit delta
839	 40.50	+1	861389..862894	+	501	22537024	atpA	SAG0861	-	F0F1 ATP synthase subunit alpha
840	 36.05	0	862910..863791	+	293	22537025	atpG	SAG0862	-	F0F1 ATP synthase subunit gamma
841	 41.08	+1	863865..865271	+	468	22537026	atpD	SAG0863	-	F0F1 ATP synthase subunit beta
842	 42.27	+1	865284..865697	+	137	22537027	atpC	SAG0864	-	F0F1 ATP synthase subunit epsilon
843	 26.41	-2	865762..865992	+	76	22537028	-	SAG0865	-	hypothetical protein
844	 39.78	+1	866055..867326	+	423	22537029	murA-2	SAG0866	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
845	 33.33	0	867328..867519	+	63	22537030	-	SAG0867	-	hypothetical protein
846	 33.80	0	867594..868451	+	285	22537031	endA	SAG0868	-	DNA-entry nuclease
847	 37.85	0	868743..869783	+	346	22537032	pheS	SAG0869	-	phenylalanyl-tRNA synthetase subunit alpha
848	 33.14	0	869866..870387	+	173	22537033	-	SAG0870	-	acetyltransferase
849	 37.91	0	870441..872846	+	801	22537034	pheT	SAG0871	-	phenylalanyl-tRNA synthetase subunit beta
850	 40.53	+1	872915..873817	-	300	22537035	-	SAG0872	-	hypothetical protein
851	 33.98	0	873995..877228	+	1077	22537036	rexB	SAG0873	-	exonuclease RexB
852	 34.22	0	877218..880841	+	1207	22537037	rexA	SAG0874	-	exonuclease RexA
853	 32.68	0	880854..881771	+	305	22537038	-	SAG0875	-	magnesium transporter CorA family protein
854	 36.67	0	881804..883180	-	458	22537039	trmE	SAG0876	-	tRNA modification GTPase TrmE
855	 35.01	0	883308..885218	+	636	22537040	-	SAG0877	-	ABC transporter, ATP-binding protein
856	 40.56	+1	885368..886336	+	322	22537041	-	SAG0878	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, alpha subunit
857	 39.84	+1	886411..887409	+	332	22537042	-	SAG0879	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, beta subunit
858	 38.30	0	887536..888924	+	462	22537043	-	SAG0880	-	branched-chain alpha-keto acid dehydrogenase subunit E2
859	 40.16	+1	888984..890741	+	585	22537044	-	SAG0881	-	acetoin dehydrogenase, thymine PPi dependent, E3 component, dihydrolipoamide dehydrogenase
860	 35.35	0	890839..891828	+	329	22537045	lplA-1	SAG0882	-	lipoate-protein ligase A
861	 35.11	0	891936..892721	-	261	22537046	-	SAG0883	-	cobyric acid synthase, putative
862	 37.95	0	892721..894064	-	447	22537047	-	SAG0884	-	mur ligase family protein
863	 35.56	0	894204..895055	+	283	22537048	-	SAG0885	-	hypothetical protein
864	 33.23	0	895058..896017	+	319	22537049	-	SAG0886	-	hypothetical protein
865	 39.17	0	896071..897423	+	450	22537050	-	SAG0887	-	phosphoglucomutase/phosphomannomutase family protein
866	 31.45	-1	897546..897917	+	123	22537051	-	SAG0888	-	hypothetical protein
867	 36.75	0	897942..898322	+	126	22537052	-	SAG0889	-	hypothetical protein
868	 34.92	0	898414..899544	+	376	22537053	-	SAG0890	-	coproporphyrinogen III oxidase
869	 32.38	0	899548..900285	+	245	22537054	-	SAG0891	-	hypothetical protein
870	 35.80	0	900286..901056	+	256	22537055	-	SAG0892	-	HAD superfamily hydrolase
871	 29.07	-1	901046..901702	+	218	22537056	-	SAG0893	-	hypothetical protein
872	 34.33	0	902090..906202	+	1370	22537057	-	SAG0894	-	hypothetical protein
873	 34.71	0	906204..907073	+	289	22537058	-	SAG0895	-	lipoyl-binding domain-containing protein
874	 35.78	0	907085..907411	+	108	22537059	-	SAG0896	-	oxidoreductase, putative
875	 30.78	-1	907398..908063	+	221	22537060	-	SAG0897	-	hypothetical protein
876	 40.48	+1	908175..908426	+	83	22537061	-	SAG0898	-	hypothetical protein
877	 37.93	0	908439..908612	+	57	22537062	-	SAG0899	-	hypothetical protein
878	 39.77	+1	908847..909017	+	56	22537063	-	SAG0900	-	hypothetical protein
879	 39.58	+1	909099..909482	+	127	22537064	-	SAG0901	-	hypothetical protein
880	 39.13	0	909460..909597	+	45	22537065	-	SAG0902	-	hypothetical protein
881	 38.52	0	909601..909735	+	44	22537066	-	SAG0903	-	hypothetical protein
882	 35.67	0	910104..910274	+	56	22537067	-	SAG0904	-	hypothetical protein
883	 40.77	+1	910407..910823	+	138	22537068	ndk	SAG0905	-	nucleoside diphosphate kinase
884	 37.59	0	910959..912791	+	610	22537069	lepA	SAG0906	-	GTP-binding protein LepA
885	 33.90	0	913038..915671	+	877	22537070	-	SAG0907	-	protein of unknown function/lipoprotein, putative
886	 34.97	0	915819..916430	+	203	22537071	-	SAG0908	-	HD domain-containing protein
887	 32.90	0	916439..916903	+	154	22537072	-	SAG0909	-	acetyltransferase
888	 38.39	0	916903..917337	+	144	22537073	-	SAG0910	-	methionine sulfoxide reductase B
889	 37.49	0	917489..920281	+	930	22537074	-	SAG0911	-	cation transporter E1-E2 family ATPase
890	 31.07	-1	920281..921384	+	367	22537075	-	SAG0912	-	hypothetical protein
891	 34.43	0	921505..922143	-	212	22537076	cat	SAG0913	-	chloramphenicol acetyltransferase
892	 33.01	0	922854..923465	+	203	22537077	-	SAG0914	-	hypothetical protein
893	 37.27	0	923639..924856	-	405	22537078	-	SAG0915	-	Tn916, transposase
894	 35.29	0	924938..925141	-	67	22537079	-	SAG0916	-	Tn916, excisionase
895	 42.46	+1	925125..925376	+	83	22537080	-	SAG0917	-	Tn916 hypothetical protein
896	 37.23	0	925602..925832	-	76	22537081	-	SAG0918	-	Tn916 hypothetical protein
897	 38.61	0	925829..926302	-	157	22537082	-	SAG0919	-	Tn916 hypothetical protein
898	 29.17	-1	926480..926551	-	23	22537083	-	SAG0920	-	Tn916 hypothetical protein
899	 36.44	0	926756..927109	+	117	22537084	-	SAG0921	-	Tn916, transcriptional regulator, putative
900	 34.95	0	927169..927354	-	61	22537085	-	SAG0922	-	Tn916 hypothetical protein
901	 36.04	0	927455..929374	-	639	22537086	tetM	SAG0923	-	tetracycline resistance protein
902	 32.18	0	929390..929476	-	28	22537087	-	SAG0924	-	Tn916, tetM leader peptide
903	 37.41	0	929751..930683	-	310	22537088	-	SAG0925	-	Tn916 hypothetical protein
904	 42.71	+1	930680..931681	-	333	22537089	-	SAG0926	-	Tn916, NLP/P60 family protein
905	 41.74	+1	931678..933855	-	725	22537090	-	SAG0927	-	hypothetical protein
906	 38.86	0	936288..936794	-	168	22537091	-	SAG0929	-	Tn916 hypothetical protein
907	 40.36	+1	936769..937266	-	165	22537092	-	SAG0930	-	Tn916 hypothetical protein
908	 37.39	0	937383..937604	-	73	22537093	-	SAG0931	-	Tn916 hypothetical protein
909	 41.13	+1	937647..938852	-	401	22537094	-	SAG0932	-	Tn916, transcriptional regulator, putative
910	 39.97	+1	939030..940415	-	461	22537095	-	SAG0933	-	Tn916, FtsK/SpoIIIE family protein
911	 41.60	+1	940444..940830	-	128	22537096	-	SAG0934	-	Tn916 hypothetical protein
912	 40.32	+1	940846..941160	-	104	22537097	-	SAG0935	-	Tn916 hypothetical protein
913	 33.33	0	941183..941302	-	39	22537098	-	SAG0936	-	Tn916 hypothetical protein
914	 35.23	0	943034..943402	-	122	22537099	-	SAG0938	-	GntR family transcriptional regulator
915	 34.43	0	943547..946651	+	1034	22537100	dnaE	SAG0939	-	DNA polymerase III DnaE
916	 43.79	+2	946732..947754	+	340	22537101	pfkA	SAG0940	-	6-phosphofructokinase
917	 38.79	0	947803..949305	+	500	22537102	pyk	SAG0941	-	pyruvate kinase
918	 30.65	-1	949476..950033	+	185	22537103	-	SAG0942	-	signal peptidase I, putative
919	 21.53	-2	950047..950190	-	47	22537104	-	SAG0943	-	hypothetical protein
920	 37.41	0	950302..952116	+	604	22537105	glmS	SAG0944	-	D-fructose-6-phosphate amidotransferase
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.