IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
763	 35.13	0	782400..783344	+	314	22536948	-	SAG0784	-	LacI family sugar-binding transcriptional regulator
764	 32.33	0	783403..784395	-	330	22536949	-	SAG0785	-	hypothetical protein
765	 33.20	0	784571..785299	+	242	22536950	-	SAG0786	-	hypothetical protein
766	 33.33	0	785353..786390	+	345	22536951	holA	SAG0787	-	DNA polymerase III subunit delta
767	 38.59	0	786470..787078	+	202	22536952	sodA	SAG0788	-	superoxide dismutase, Fe-Mn
768	 32.51	0	787416..788267	+	283	22536953	-	SAG0789	-	transcriptional antiterminator LicT
769	 35.96	0	788260..790128	+	622	22536954	-	SAG0790	-	PTS system, beta-glucosides-specific IIABC components
770	 35.57	0	790145..791572	+	475	22536955	bglA	SAG0791	-	6-phospho-beta-glucosidase
771	 30.96	-1	791641..792735	-	364	22536956	-	SAG0792	-	hypothetical protein
772	 37.97	0	792902..794044	+	380	22536957	garK	SAG0793	-	glycerate kinase 2
773	 38.35	0	794069..795325	+	418	22536958	-	SAG0794	-	GntP family permease
774	 34.55	0	795426..796490	+	354	22536959	-	SAG0795	-	hypothetical protein
775	 34.68	0	796545..796988	-	147	22536960	-	SAG0796	-	MarR family transcriptional regulator
776	 38.58	0	797069..798097	-	342	22536961	queA	SAG0797	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
777	 37.00	0	798250..798930	+	226	22536962	-	SAG0798	-	hypothetical protein
778	 34.47	0	799081..799782	+	233	22536963	nagB	SAG0799	-	glucosamine-6-phosphate isomerase
779	 35.42	0	799854..800810	-	318	22536964	-	SAG0800	-	glutathione S-transferase family protein
780	 35.56	0	800906..801625	+	239	22536965	-	SAG0801	-	ribosomal small subunit pseudouridine synthase A, putative
781	 27.35	-2	801600..801716	-	38	22536966	-	SAG0802	-	hypothetical protein
782	 32.55	0	801698..802849	+	383	22536967	-	SAG0803	-	major facilitator family protein
783	 33.65	0	802901..803848	+	315	22536968	coiA	SAG0804	-	competence protein CoiA
784	 36.54	0	803864..805669	+	601	22536969	pepB	SAG0805	-	group B oligopeptidase PepB
785	 31.42	-1	805864..806490	+	208	22536970	-	SAG0806	-	HAD superfamily hydrolase
786	 35.31	0	806564..807271	+	235	22536971	-	SAG0807	-	O-methyltransferase family protein
787	 33.76	0	807332..808261	+	309	22536972	prsA	SAG0808	-	foldase protein PrsA
788	 33.95	0	808503..808988	+	161	22536973	-	SAG0809	-	hypothetical protein
789	 42.04	+1	809004..811622	+	872	22536974	alaS	SAG0810	-	alanyl-tRNA synthetase
790	 33.75	0	811704..812420	+	238	22536975	-	SAG0811	-	hypothetical protein
791	 32.23	0	812508..813326	+	272	22536976	-	SAG0812	-	glycosyl transferase family protein
792	 31.30	-1	813470..813715	+	81	22536977	-	SAG0813	-	hypothetical protein
793	 36.81	0	813754..814041	+	95	22536978	-	SAG0814	-	hypothetical protein
794	 33.33	0	814086..814301	+	71	22536979	-	SAG0815	-	Cro/CI family transcriptional regulator
795	 27.56	-2	814301..815062	+	253	22536980	-	SAG0816	-	hypothetical protein
796	 34.75	0	815147..815710	-	187	22536981	-	SAG0817	-	hypothetical protein
797	 35.31	0	815951..816910	-	319	22536982	nrdF	SAG0818	-	ribonucleotide-diphosphate reductase subunit beta
798	 35.79	0	817113..819272	-	719	22536983	nrdE-2	SAG0819	-	ribonucleotide-diphosphate reductase subunit alpha
799	 33.78	0	819350..819574	-	74	22536984	nrdH	SAG0820	-	ribonucleoside-diphosphate reductase 2, NrdH-redoxin
800	 40.53	+1	819957..820220	+	87	22536985	ptsH	SAG0821	-	phosphocarrier protein HPr
801	 40.20	+1	820225..821958	+	577	22536986	ptsI	SAG0822	-	phosphoenolpyruvate-protein phosphotransferase
802	 38.94	0	822108..823535	+	475	22536987	gapN	SAG0823	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
803	 32.46	0	823675..824928	+	417	22536988	-	SAG0824	-	polysaccharide deacetylase family protein
804	 34.35	0	824961..826043	-	360	22536989	-	SAG0825	-	DEAD-box ATP dependent DNA helicase
805	 34.44	0	826188..826817	+	209	22536990	udk	SAG0826	-	uridine kinase
806	 33.73	0	826904..827401	+	165	22536991	-	SAG0827	-	hypothetical protein
807	 35.32	0	827401..829065	+	554	22536992	dnaX	SAG0828	-	DNA polymerase III subunits gamma and tau
808	 31.79	0	829154..829348	+	64	22536993	-	SAG0829	-	hypothetical protein
809	 34.72	0	829329..830264	-	311	22536994	-	SAG0830	-	biotin--protein ligase
810	 40.77	+1	830449..831645	+	398	22536995	metK	SAG0831	-	S-adenosylmethionine synthetase
811	 31.30	-1	832166..834427	+	753	22536996	-	SAG0832	-	hypothetical protein
812	 31.32	-1	834494..835039	+	181	22536997	-	SAG0833	-	hypothetical protein
813	 43.41	+2	835199..835327	+	42	22536998	-	SAG0834	-	hypothetical protein
814	 37.92	0	835435..836001	+	188	22536999	-	SAG0835	-	hypothetical protein
815	 34.59	0	835998..836552	+	184	22537000	-	SAG0836	-	hypothetical protein
816	 33.72	0	836556..837842	+	428	22537001	-	SAG0837	-	ABC transporter, ATP-binding protein
817	 34.19	0	837797..838498	+	233	22537002	-	SAG0838	-	hypothetical protein
818	 34.36	0	838582..839262	+	226	22537003	-	SAG0839	-	TenA family transcription regulator
819	 38.85	0	839264..840061	+	265	22537004	thiD	SAG0840	-	phosphomethylpyrimidine kinase
820	 38.00	0	840063..840833	+	256	22537005	thiM	SAG0841	-	hydroxyethylthiazole kinase
821	 34.23	0	840847..841518	+	223	22537006	thiE	SAG0842	-	thiamine-phosphate pyrophosphorylase
822	 40.32	+1	841645..842904	+	419	22537007	murA-1	SAG0843	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
823	 34.77	0	843006..843560	+	184	22537008	-	SAG0844	-	acetyltransferase
824	 34.97	0	843553..844836	+	427	22537009	-	SAG0845	-	CBS domain-containing protein
825	 40.19	+1	844859..845719	+	286	22537010	map	SAG0846	-	methionine aminopeptidase
826	 33.33	0	845721..846641	+	306	22537011	-	SAG0847	-	ribonuclease BN, putative
827	 28.73	-1	846658..847113	-	151	22537012	-	SAG0848	-	GtrA family protein
828	 34.31	0	847295..847804	+	169	22537013	-	SAG0849	-	hypothetical protein
829	 37.06	0	847944..849902	+	652	22537014	ligA	SAG0850	-	NAD-dependent DNA ligase LigA
830	 35.29	0	849914..850933	+	339	22537015	-	SAG0851	-	putative lipid kinase
831	 35.51	0	850937..853237	+	766	22537016	-	SAG0852	-	pullulanase, putative
832	 35.10	0	853443..855311	+	622	22537017	glgB	SAG0853	-	glycogen branching enzyme
833	 37.54	0	855353..856492	+	379	22537018	glgC	SAG0854	-	glucose-1-phosphate adenylyltransferase
834	 35.43	0	857611..859041	+	476	22537019	glgA	SAG0856	-	glycogen synthase
835	 39.80	+1	859373..859573	+	66	22537020	atpE	SAG0857	-	F0F1 ATP synthase subunit C
836	 32.64	0	859606..860322	+	238	22537021	atpB	SAG0858	-	F0F1 ATP synthase subunit A
837	 34.54	0	860340..860837	+	165	22537022	atpF	SAG0859	-	F0F1 ATP synthase subunit B
838	 32.40	0	860837..861373	+	178	22537023	atpH	SAG0860	-	F0F1 ATP synthase subunit delta
839	 40.50	+1	861389..862894	+	501	22537024	atpA	SAG0861	-	F0F1 ATP synthase subunit alpha
840	 36.05	0	862910..863791	+	293	22537025	atpG	SAG0862	-	F0F1 ATP synthase subunit gamma
841	 41.08	+1	863865..865271	+	468	22537026	atpD	SAG0863	-	F0F1 ATP synthase subunit beta
842	 42.27	+1	865284..865697	+	137	22537027	atpC	SAG0864	-	F0F1 ATP synthase subunit epsilon
843	 26.41	-2	865762..865992	+	76	22537028	-	SAG0865	-	hypothetical protein
844	 39.78	+1	866055..867326	+	423	22537029	murA-2	SAG0866	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
845	 33.33	0	867328..867519	+	63	22537030	-	SAG0867	-	hypothetical protein
846	 33.80	0	867594..868451	+	285	22537031	endA	SAG0868	-	DNA-entry nuclease
847	 37.85	0	868743..869783	+	346	22537032	pheS	SAG0869	-	phenylalanyl-tRNA synthetase subunit alpha
848	 33.14	0	869866..870387	+	173	22537033	-	SAG0870	-	acetyltransferase
849	 37.91	0	870441..872846	+	801	22537034	pheT	SAG0871	-	phenylalanyl-tRNA synthetase subunit beta
850	 40.53	+1	872915..873817	-	300	22537035	-	SAG0872	-	hypothetical protein
851	 33.98	0	873995..877228	+	1077	22537036	rexB	SAG0873	-	exonuclease RexB
852	 34.22	0	877218..880841	+	1207	22537037	rexA	SAG0874	-	exonuclease RexA
853	 32.68	0	880854..881771	+	305	22537038	-	SAG0875	-	magnesium transporter CorA family protein
854	 36.67	0	881804..883180	-	458	22537039	trmE	SAG0876	-	tRNA modification GTPase TrmE
855	 35.01	0	883308..885218	+	636	22537040	-	SAG0877	-	ABC transporter, ATP-binding protein
856	 40.56	+1	885368..886336	+	322	22537041	-	SAG0878	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, alpha subunit
857	 39.84	+1	886411..887409	+	332	22537042	-	SAG0879	-	acetoin dehydrogenase, thymine PPi dependent, E1 component, beta subunit
858	 38.30	0	887536..888924	+	462	22537043	-	SAG0880	-	branched-chain alpha-keto acid dehydrogenase subunit E2
859	 40.16	+1	888984..890741	+	585	22537044	-	SAG0881	-	acetoin dehydrogenase, thymine PPi dependent, E3 component, dihydrolipoamide dehydrogenase
860	 35.35	0	890839..891828	+	329	22537045	lplA-1	SAG0882	-	lipoate-protein ligase A
861	 35.11	0	891936..892721	-	261	22537046	-	SAG0883	-	cobyric acid synthase, putative
862	 37.95	0	892721..894064	-	447	22537047	-	SAG0884	-	mur ligase family protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.