IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
737	 36.33	0	749749..751548	-	599	22536922	-	SAG0758	-	oligoendopeptidase F, putative
738	 34.33	0	751757..754552	+	931	22536923	ppc	SAG0759	-	phosphoenolpyruvate carboxylase
739	 37.92	0	754678..755811	+	377	22536924	-	SAG0760	-	IS1548 transposase
740	 35.30	0	755984..757252	+	422	22536925	ftsW	SAG0761	-	cell cycle protein FtsW
741	 42.94	+1	757604..758800	+	398	22536926	tuf	SAG0762	-	elongation factor Tu
742	 41.50	+1	758981..759739	+	252	22536927	tpiA	SAG0763	-	triosephosphate isomerase
743	 38.67	0	759916..760608	+	230	22536928	-	SAG0764	-	phosphoglyceromutase
744	 35.97	0	760737..762782	+	681	22536929	-	SAG0765	-	penicillin-binding protein 2b
745	 36.35	0	762797..763393	+	198	22536930	recR	SAG0766	-	recombination protein RecR
746	 35.82	0	763534..764580	+	348	22536931	ddl	SAG0767	-	D-alanyl-alanine synthetase A
747	 35.82	0	764727..766094	+	455	22536932	murF	SAG0768	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
748	 34.73	0	766281..767501	+	406	22536933	-	SAG0769	-	oxalate:formate antiporter
749	 33.33	0	767630..768316	+	228	22536934	-	SAG0770	-	hypothetical protein
750	 37.10	0	768495..770033	+	512	22536935	-	SAG0771	-	cell wall surface anchor family protein
751	 38.19	0	770210..771754	+	514	22536936	prfC	SAG0772	-	peptide chain release factor 3
752	 33.33	0	771840..772220	+	126	22536937	-	SAG0773	-	hypothetical protein
753	 30.48	-1	772341..773075	+	244	22536938	-	SAG0774	-	ABC transporter, ATP-binding protein
754	 33.48	0	773068..773730	+	220	22536939	-	SAG0775	-	ABC transporter, permease protein
755	 32.97	0	773746..774576	+	276	22536940	-	SAG0776	-	YaeC family protein
756	 37.87	0	774811..776397	+	528	22536941	-	SAG0777	-	DEAD-box ATP dependent DNA helicase
757	 32.96	0	776582..776848	-	88	22536942	-	SAG0778	-	hypothetical protein
758	 34.64	0	776841..777605	-	254	22536943	-	SAG0779	-	hypothetical protein
759	 35.63	0	777740..778480	+	246	22536944	-	SAG0780	-	acyltransferase family protein
760	 33.64	0	778580..779233	+	217	22536945	celA	SAG0781	-	competence protein CelA
761	 33.29	0	779217..781454	+	745	22536946	-	SAG0782	-	DNA internalization-related competence protein ComEC/Rec2
762	 33.83	0	781580..782389	+	269	22536947	-	SAG0783	-	HAD superfamily hydrolase
763	 35.13	0	782400..783344	+	314	22536948	-	SAG0784	-	LacI family sugar-binding transcriptional regulator
764	 32.33	0	783403..784395	-	330	22536949	-	SAG0785	-	hypothetical protein
765	 33.20	0	784571..785299	+	242	22536950	-	SAG0786	-	hypothetical protein
766	 33.33	0	785353..786390	+	345	22536951	holA	SAG0787	-	DNA polymerase III subunit delta
767	 38.59	0	786470..787078	+	202	22536952	sodA	SAG0788	-	superoxide dismutase, Fe-Mn
768	 32.51	0	787416..788267	+	283	22536953	-	SAG0789	-	transcriptional antiterminator LicT
769	 35.96	0	788260..790128	+	622	22536954	-	SAG0790	-	PTS system, beta-glucosides-specific IIABC components
770	 35.57	0	790145..791572	+	475	22536955	bglA	SAG0791	-	6-phospho-beta-glucosidase
771	 30.96	-1	791641..792735	-	364	22536956	-	SAG0792	-	hypothetical protein
772	 37.97	0	792902..794044	+	380	22536957	garK	SAG0793	-	glycerate kinase 2
773	 38.35	0	794069..795325	+	418	22536958	-	SAG0794	-	GntP family permease
774	 34.55	0	795426..796490	+	354	22536959	-	SAG0795	-	hypothetical protein
775	 34.68	0	796545..796988	-	147	22536960	-	SAG0796	-	MarR family transcriptional regulator
776	 38.58	0	797069..798097	-	342	22536961	queA	SAG0797	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
777	 37.00	0	798250..798930	+	226	22536962	-	SAG0798	-	hypothetical protein
778	 34.47	0	799081..799782	+	233	22536963	nagB	SAG0799	-	glucosamine-6-phosphate isomerase
779	 35.42	0	799854..800810	-	318	22536964	-	SAG0800	-	glutathione S-transferase family protein
780	 35.56	0	800906..801625	+	239	22536965	-	SAG0801	-	ribosomal small subunit pseudouridine synthase A, putative
781	 27.35	-2	801600..801716	-	38	22536966	-	SAG0802	-	hypothetical protein
782	 32.55	0	801698..802849	+	383	22536967	-	SAG0803	-	major facilitator family protein
783	 33.65	0	802901..803848	+	315	22536968	coiA	SAG0804	-	competence protein CoiA
784	 36.54	0	803864..805669	+	601	22536969	pepB	SAG0805	-	group B oligopeptidase PepB
785	 31.42	-1	805864..806490	+	208	22536970	-	SAG0806	-	HAD superfamily hydrolase
786	 35.31	0	806564..807271	+	235	22536971	-	SAG0807	-	O-methyltransferase family protein
787	 33.76	0	807332..808261	+	309	22536972	prsA	SAG0808	-	foldase protein PrsA
788	 33.95	0	808503..808988	+	161	22536973	-	SAG0809	-	hypothetical protein
789	 42.04	+1	809004..811622	+	872	22536974	alaS	SAG0810	-	alanyl-tRNA synthetase
790	 33.75	0	811704..812420	+	238	22536975	-	SAG0811	-	hypothetical protein
791	 32.23	0	812508..813326	+	272	22536976	-	SAG0812	-	glycosyl transferase family protein
792	 31.30	-1	813470..813715	+	81	22536977	-	SAG0813	-	hypothetical protein
793	 36.81	0	813754..814041	+	95	22536978	-	SAG0814	-	hypothetical protein
794	 33.33	0	814086..814301	+	71	22536979	-	SAG0815	-	Cro/CI family transcriptional regulator
795	 27.56	-2	814301..815062	+	253	22536980	-	SAG0816	-	hypothetical protein
796	 34.75	0	815147..815710	-	187	22536981	-	SAG0817	-	hypothetical protein
797	 35.31	0	815951..816910	-	319	22536982	nrdF	SAG0818	-	ribonucleotide-diphosphate reductase subunit beta
798	 35.79	0	817113..819272	-	719	22536983	nrdE-2	SAG0819	-	ribonucleotide-diphosphate reductase subunit alpha
799	 33.78	0	819350..819574	-	74	22536984	nrdH	SAG0820	-	ribonucleoside-diphosphate reductase 2, NrdH-redoxin
800	 40.53	+1	819957..820220	+	87	22536985	ptsH	SAG0821	-	phosphocarrier protein HPr
801	 40.20	+1	820225..821958	+	577	22536986	ptsI	SAG0822	-	phosphoenolpyruvate-protein phosphotransferase
802	 38.94	0	822108..823535	+	475	22536987	gapN	SAG0823	-	glyceraldehyde-3-phosphate dehydrogenase, NADP-dependent
803	 32.46	0	823675..824928	+	417	22536988	-	SAG0824	-	polysaccharide deacetylase family protein
804	 34.35	0	824961..826043	-	360	22536989	-	SAG0825	-	DEAD-box ATP dependent DNA helicase
805	 34.44	0	826188..826817	+	209	22536990	udk	SAG0826	-	uridine kinase
806	 33.73	0	826904..827401	+	165	22536991	-	SAG0827	-	hypothetical protein
807	 35.32	0	827401..829065	+	554	22536992	dnaX	SAG0828	-	DNA polymerase III subunits gamma and tau
808	 31.79	0	829154..829348	+	64	22536993	-	SAG0829	-	hypothetical protein
809	 34.72	0	829329..830264	-	311	22536994	-	SAG0830	-	biotin--protein ligase
810	 40.77	+1	830449..831645	+	398	22536995	metK	SAG0831	-	S-adenosylmethionine synthetase
811	 31.30	-1	832166..834427	+	753	22536996	-	SAG0832	-	hypothetical protein
812	 31.32	-1	834494..835039	+	181	22536997	-	SAG0833	-	hypothetical protein
813	 43.41	+2	835199..835327	+	42	22536998	-	SAG0834	-	hypothetical protein
814	 37.92	0	835435..836001	+	188	22536999	-	SAG0835	-	hypothetical protein
815	 34.59	0	835998..836552	+	184	22537000	-	SAG0836	-	hypothetical protein
816	 33.72	0	836556..837842	+	428	22537001	-	SAG0837	-	ABC transporter, ATP-binding protein
817	 34.19	0	837797..838498	+	233	22537002	-	SAG0838	-	hypothetical protein
818	 34.36	0	838582..839262	+	226	22537003	-	SAG0839	-	TenA family transcription regulator
819	 38.85	0	839264..840061	+	265	22537004	thiD	SAG0840	-	phosphomethylpyrimidine kinase
820	 38.00	0	840063..840833	+	256	22537005	thiM	SAG0841	-	hydroxyethylthiazole kinase
821	 34.23	0	840847..841518	+	223	22537006	thiE	SAG0842	-	thiamine-phosphate pyrophosphorylase
822	 40.32	+1	841645..842904	+	419	22537007	murA-1	SAG0843	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
823	 34.77	0	843006..843560	+	184	22537008	-	SAG0844	-	acetyltransferase
824	 34.97	0	843553..844836	+	427	22537009	-	SAG0845	-	CBS domain-containing protein
825	 40.19	+1	844859..845719	+	286	22537010	map	SAG0846	-	methionine aminopeptidase
826	 33.33	0	845721..846641	+	306	22537011	-	SAG0847	-	ribonuclease BN, putative
827	 28.73	-1	846658..847113	-	151	22537012	-	SAG0848	-	GtrA family protein
828	 34.31	0	847295..847804	+	169	22537013	-	SAG0849	-	hypothetical protein
829	 37.06	0	847944..849902	+	652	22537014	ligA	SAG0850	-	NAD-dependent DNA ligase LigA
830	 35.29	0	849914..850933	+	339	22537015	-	SAG0851	-	putative lipid kinase
831	 35.51	0	850937..853237	+	766	22537016	-	SAG0852	-	pullulanase, putative
832	 35.10	0	853443..855311	+	622	22537017	glgB	SAG0853	-	glycogen branching enzyme
833	 37.54	0	855353..856492	+	379	22537018	glgC	SAG0854	-	glucose-1-phosphate adenylyltransferase
834	 35.43	0	857611..859041	+	476	22537019	glgA	SAG0856	-	glycogen synthase
835	 39.80	+1	859373..859573	+	66	22537020	atpE	SAG0857	-	F0F1 ATP synthase subunit C
836	 32.64	0	859606..860322	+	238	22537021	atpB	SAG0858	-	F0F1 ATP synthase subunit A
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.