IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
629	 36.04	0	631950..633614	+	554	22536814	-	SAG0645	-	cell wall surface anchor family protein
630	 38.85	0	633703..634626	+	307	22536815	-	SAG0646	-	cell wall surface anchor family protein
631	 41.94	+1	634628..635545	+	305	22536816	-	SAG0647	-	sortase family protein
632	 40.23	+1	635571..636353	+	260	22536817	-	SAG0648	-	sortase family protein
633	 33.37	0	636431..639103	+	890	22536818	-	SAG0649	-	cell wall surface anchor family protein, putative
634	 41.40	+1	639378..639947	+	189	22536819	-	SAG0650	-	sortase family protein
635	 42.08	+1	640196..640801	+	201	22536820	-	SAG0651	-	hypothetical protein
636	 26.67	-2	642197..642301	+	34	22536821	-	SAG0654	-	hypothetical protein
637	 27.01	-2	642734..642907	+	57	22536822	-	SAG0655	-	hypothetical protein
638	 33.33	0	643279..643389	-	36	22536823	-	SAG0656	-	hypothetical protein
639	 32.22	0	643420..643689	+	89	22536824	-	SAG0657	-	hypothetical protein
640	 34.03	0	643750..644901	+	383	22536825	-	SAG0658	-	putative lipoprotein
641	 36.05	0	645101..646093	+	330	22536826	-	SAG0659	-	ABC transporter, ATP-binding protein
642	 32.97	0	646096..646914	+	272	22536827	-	SAG0660	-	hypothetical protein
643	 32.95	0	646916..647701	+	261	22536828	-	SAG0661	-	hypothetical protein
644	 34.31	0	648326..648631	+	101	22536829	-	SAG0662	-	cylX protein
645	 31.92	0	648631..649479	+	282	22536830	cylD	SAG0663	-	cylD protein
646	 34.44	0	649476..650198	+	240	22536831	cylG	SAG0664	-	cylG protein
647	 31.70	0	650191..650496	+	101	22536832	-	SAG0665	-	acyl carrier protein AcpC
648	 35.22	0	650480..650956	+	158	22536833	-	SAG0666	-	cylZ protein
649	 33.44	0	650946..651875	+	309	22536834	cylA	SAG0667	-	cylA protein
650	 33.11	0	651868..652746	+	292	22536835	cylB	SAG0668	-	cylB protein
651	 32.29	0	652743..654746	+	667	22536836	cylE	SAG0669	-	cylE protein
652	 33.23	0	654743..655696	+	317	22536837	cylF	SAG0670	-	cylF protein
653	 36.25	0	655693..657888	+	731	22536838	cylI	SAG0671	-	cylI protein
654	 31.52	-1	657893..659104	+	403	22536839	cylJ	SAG0672	-	cylJ protein
655	 30.21	-1	659073..659648	+	191	22536840	cylK	SAG0673	-	cylK protein
656	 30.99	-1	659991..660332	+	113	22536841	-	SAG0674	-	hypothetical protein
657	 40.50	+1	660366..660881	+	171	22536842	-	SAG0675	-	secreted protein, putative
658	 36.16	0	660933..663590	+	885	22536843	-	SAG0676	-	proteinase, putative
659	 34.37	0	663693..666881	+	1062	22536844	-	SAG0677	-	hypothetical protein
660	 35.37	0	669128..670159	+	343	22536845	-	SAG0679	-	hypothetical protein
661	 36.08	0	670194..671213	+	339	22536846	-	SAG0680	-	hypothetical protein
662	 34.37	0	671248..672309	+	353	22536847	-	SAG0681	-	hypothetical protein
663	 34.55	0	672433..673662	+	409	22536848	-	SAG0682	-	permease, putative
664	 33.78	0	675121..675792	+	223	22536849	-	SAG0684	-	ABC transporter, ATP-binding protein
665	 35.24	0	675849..677267	-	472	22536850	-	SAG0685	-	hypothetical protein
666	 35.62	0	677555..678340	+	261	22536851	-	SAG0686	-	DNA-entry nuclease, putative
667	 35.37	0	678418..679056	-	212	22536852	-	SAG0687	-	DedA family protein, putative
668	 33.18	0	679273..679929	+	218	22536853	-	SAG0688	-	ABC transporter, ATP-binding protein
669	 32.69	0	679926..680699	+	257	22536854	-	SAG0689	-	hypothetical protein
670	 32.60	0	680863..681681	+	272	22536855	-	SAG0690	-	hypothetical protein
671	 34.01	0	681718..682602	-	294	22536856	-	SAG0691	-	LysR family transcriptional regulator
672	 38.49	0	682795..683376	+	193	22536857	-	SAG0692	-	regulatory protein, putative
673	 38.01	0	683390..684523	-	377	22536858	-	SAG0693	-	IS1548 transposase
674	 38.17	0	685192..686184	+	330	22536859	ldhA	SAG0695	-	D-lactate dehydrogenase
675	 34.24	0	686391..687941	+	516	22536860	-	SAG0696	-	sugar transporter, putative
676	 35.58	0	688008..689033	+	341	22536861	-	SAG0697	-	2-keto-3-deoxygluconate kinase
677	 35.39	0	689050..690849	+	599	22536862	-	SAG0698	-	beta-D-glucuronidase
678	 38.54	0	690878..691549	+	223	22536863	-	SAG0699	-	GntR family transcriptional regulator
679	 37.86	0	691666..692283	+	205	22536864	eda-1	SAG0700	-	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
680	 34.83	0	692300..693700	+	466	22536865	uxaC	SAG0701	-	glucuronate isomerase
681	 39.06	0	693718..694764	+	348	22536866	uxuA	SAG0702	-	mannonate dehydratase
682	 37.86	0	694888..695727	+	279	22536867	-	SAG0703	-	D-mannonate oxidoreductase
683	 36.65	0	695880..696692	+	270	22536868	-	SAG0704	-	HAD superfamily hydrolase
684	 39.36	+1	696708..698498	+	596	22536869	-	SAG0705	-	glycosy hydrolase family protein
685	 36.56	0	698556..699641	-	361	22536870	pepQ	SAG0706	-	proline dipeptidase
686	 38.51	0	699851..700855	+	334	22536871	-	SAG0707	-	RegM family transcriptional regulator
687	 35.24	0	700987..702453	+	488	22536872	-	SAG0708	-	cytoplasmic alpha-amylase
688	 36.74	0	702498..703496	+	332	22536873	-	SAG0709	-	glycosyl transferase, group 1 family protein
689	 35.88	0	703498..704832	+	444	22536874	-	SAG0710	-	glycosyl transferase, group 1 family protein
690	 38.12	0	705289..707232	+	647	22536875	thrS	SAG0711	-	threonyl-tRNA synthetase
691	 33.62	0	707454..708158	+	234	22536876	-	SAG0712	-	DNA-binding response regulator
692	 34.22	0	708256..709275	+	339	22536877	-	SAG0713	-	hypothetical protein
693	 31.39	-1	709443..710009	+	188	22536878	-	SAG0714	-	hypothetical protein
694	 32.26	0	710058..710708	-	216	22536879	-	SAG0715	-	amino acid ABC transporter, permease protein
695	 37.21	0	710720..711415	-	231	22536880	-	SAG0716	-	amino acid ABC transporter, permease protein
696	 34.71	0	711428..712228	-	266	22536881	-	SAG0717	-	amino acid ABC transporter, amino acid-binding protein
697	 36.38	0	712240..712995	-	251	22536882	-	SAG0718	-	amino acid ABC transporter, ATP-binding protein
698	 36.15	0	713335..714045	+	236	22536883	-	SAG0719	-	DNA-binding response regulator
699	 35.19	0	714038..715387	+	449	22536884	-	SAG0720	-	sensory box histidine kinase
700	 37.78	0	715391..716200	+	269	22536885	-	SAG0721	-	metallo-beta-lactamase superfamily protein
701	 33.88	0	716203..716571	+	122	22536886	-	SAG0722	-	hypothetical protein
702	 35.44	0	716723..717433	+	236	22536887	rnc	SAG0723	-	ribonuclease III
703	 35.59	0	717441..720980	+	1179	22536888	-	SAG0724	-	chromosome segregation SMC protein
704	 34.59	0	721071..721868	+	265	22536889	-	SAG0725	-	HAD superfamily hydrolase
705	 35.39	0	721868..722692	+	274	22536890	-	SAG0726	-	HAD superfamily hydrolase
706	 38.24	0	722692..724302	+	536	22536891	ftsY	SAG0727	-	signal recognition particle-docking protein FtsY
707	 33.46	0	724339..725151	-	270	22536892	-	SAG0728	-	hypothetical protein
708	 34.33	0	725151..726053	-	300	22536893	-	SAG0729	-	ABC transporter, permease protein, putative
709	 33.33	0	726059..726187	-	42	22536894	-	SAG0730	-	hypothetical protein
710	 38.89	0	726320..727363	+	347	22536895	-	SAG0731	-	luciferase family protein
711	 36.11	0	727468..729630	+	720	22536896	-	SAG0732	-	transcriptional accessory protein Tex, putative
712	 35.66	0	729623..730051	+	142	22536897	-	SAG0733	-	hypothetical protein
713	 37.50	0	730132..730395	+	87	22536898	-	SAG0734	-	phage shock protein C, putative
714	 31.85	0	730373..730507	+	44	22536899	-	SAG0735	-	hypothetical protein
715	 39.64	+1	730623..731558	+	311	22536900	hprK	SAG0736	-	HPr kinase/phosphorylase
716	 38.24	0	731551..732324	+	257	22536901	lgt	SAG0737	-	prolipoprotein diacylglyceryl transferase
717	 32.58	0	732339..732737	+	132	22536902	-	SAG0738	-	hypothetical protein
718	 30.09	-1	732734..733165	+	143	22536903	-	SAG0739	-	hypothetical protein
719	 39.49	+1	733206..733481	-	91	22536904	-	SAG0740	-	hypothetical protein
720	 35.31	0	733836..734747	+	303	22536905	-	SAG0741	-	hypothetical protein
721	 39.32	+1	734877..736163	+	428	22536906	-	SAG0742	-	U32 family peptidase
722	 33.33	0	736290..736502	+	70	22536907	-	SAG0743	-	hypothetical protein
723	 30.95	-1	736626..737423	+	265	22536908	-	SAG0744	-	hypothetical protein
724	 36.32	0	737525..738865	-	446	22536909	-	SAG0745	-	Mn2+/Fe2+ transporter
725	 36.22	0	739594..740703	+	369	22536910	ribD	SAG0746	-	riboflavin biosynthesis protein RibD
726	 37.17	0	740684..741334	+	216	161485615	ribE	SAG0747	-	riboflavin synthase subunit alpha
727	 37.02	0	741352..742545	+	397	22536912	ribA	SAG0748	-	riboflavin biosynthesis protein RibA
728	 35.88	0	742560..743030	+	156	22536913	ribH	SAG0749	-	riboflavin synthase, beta subunit
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.