IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
521	 35.06	0	544426..545409	-	327	22536706	-	SAG0528	-	inosine-uridine preferring nucleoside hydrolase
522	 28.21	-1	545442..545558	-	38	22536707	-	SAG0529	-	hypothetical protein
523	 34.06	0	545655..546068	-	137	22536708	-	SAG0530	-	OsmC/Ohr family protein
524	 36.81	0	546222..547112	+	296	22536709	-	SAG0531	-	hypothetical protein
525	 38.97	0	547109..548083	+	324	22536710	-	SAG0532	-	hypothetical protein
526	 34.21	0	548080..548991	+	303	22536711	-	SAG0533	-	hypothetical protein
527	 37.48	0	549006..550403	+	465	22536712	-	SAG0534	-	dipeptidase
528	 34.98	0	550545..552065	+	506	22536713	-	SAG0535	-	zinc ABC transporter, zinc-binding adhesion liprotein
529	 37.16	0	552178..552438	-	86	22536714	rpmE2	SAG0536	-	50S ribosomal protein L31 type B
530	 37.93	0	552547..553482	-	311	22536715	-	SAG0537	-	DHH family protein
531	 36.95	0	553748..554770	+	340	22536716	-	SAG0538	-	adenosine deaminase
532	 37.84	0	554829..555272	+	147	22536717	-	SAG0539	-	flavodoxin
533	 32.25	0	555349..555624	+	91	22536718	-	SAG0540	-	hypothetical protein
534	 36.93	0	555617..556813	+	398	22536719	-	SAG0541	-	voltage-gated chloride channel family protein
535	 39.06	0	557266..557649	+	127	22536720	-	SAG0542	-	IS1381 transposase protein A
536	 38.46	0	557682..558071	+	129	22536721	-	SAG0543	-	IS1381 transposase protein B
537	 40.80	+1	558254..558601	+	115	22536722	rplS	SAG0544	-	50S ribosomal protein L19
538	 34.44	0	558826..559905	-	359	22536723	-	SAG0545	-	prophage LambdaSa1, site-specific recombinase phage integrase family protein
539	 37.25	0	560028..560231	-	67	22536724	-	SAG0546	-	hypothetical protein
540	 31.72	0	560334..560891	-	185	22536725	-	SAG0547	-	hypothetical protein
541	 35.46	0	560893..561690	-	265	22536726	-	SAG0548	-	prophage LambdaSa1, repressor protein, putative
542	 39.58	+1	562051..562194	+	47	22536727	-	SAG0549	-	hypothetical protein
543	 44.44	+2	562191..562415	-	74	22536728	-	SAG0550	-	hypothetical protein
544	 40.88	+1	562474..562632	+	52	22536729	-	SAG0551	-	hypothetical protein
545	 28.04	-1	562662..562850	+	62	22536730	-	SAG0552	-	hypothetical protein
546	 27.88	-1	562833..563639	-	268	22536731	-	SAG0553	-	hypothetical protein
547	 33.33	0	563691..563882	+	63	22536732	-	SAG0554	-	prophage LambdaSa1, Cro/CI family transcriptional regulator
548	 37.07	0	563950..564699	+	249	22536733	-	SAG0555	-	prophage LambdaSa1, antirepressor, putative
549	 37.50	0	564711..564854	+	47	22536734	-	SAG0556	-	hypothetical protein
550	 32.47	0	565004..565234	+	76	22536735	-	SAG0557	-	hypothetical protein
551	 40.44	+1	565372..565596	+	74	22536736	-	SAG0558	-	hypothetical protein
552	 32.64	0	565607..566467	+	286	22536737	-	SAG0559	-	hypothetical protein
553	 34.62	0	566448..566681	+	77	22536738	-	SAG0560	-	hypothetical protein
554	 41.84	+1	566678..566818	+	46	22536739	-	SAG0561	-	hypothetical protein
555	 35.69	0	566829..567083	+	84	22536740	-	SAG0562	-	hypothetical protein
556	 35.19	0	567086..567247	+	53	22536741	-	SAG0563	-	hypothetical protein
557	 32.92	0	567249..567731	+	160	22536742	-	SAG0564	-	hypothetical protein
558	 38.07	0	567732..568406	+	224	22536743	-	SAG0565	-	hypothetical protein
559	 37.41	0	568399..568815	+	138	22536744	ssb-2	SAG0566	-	prophage LambdaSa1, single-strand binding protein
560	 36.14	0	569396..570715	+	439	22536745	-	SAG0567	-	prophage LambdaSa1, reverse transcriptase/maturase family protein
561	 37.25	0	570841..571044	+	67	22536746	-	SAG0568	-	hypothetical protein
562	 36.27	0	571034..571510	+	158	22536747	-	SAG0569	-	hypothetical protein
563	 34.77	0	571500..571847	+	115	22536748	-	SAG0570	-	hypothetical protein
564	 29.55	-1	572165..572296	+	43	22536749	-	SAG0571	-	hypothetical protein
565	 35.97	0	572296..572712	+	138	22536750	-	SAG0572	-	hypothetical protein
566	 38.79	0	572709..572873	+	54	22536751	-	SAG0573	-	hypothetical protein
567	 38.15	0	572870..573139	+	89	22536752	-	SAG0574	-	hypothetical protein
568	 31.23	-1	573142..573474	+	110	22536753	-	SAG0575	-	hypothetical protein
569	 28.79	-1	573557..573688	+	43	22536754	-	SAG0576	-	hypothetical protein
570	 37.83	0	573781..574314	+	177	22536755	-	SAG0577	-	hypothetical protein
571	 26.22	-2	574311..574577	+	88	22536756	-	SAG0578	-	hypothetical protein
572	 36.83	0	574965..575393	+	142	22536757	-	SAG0579	-	hypothetical protein
573	 31.93	0	576505..576861	+	118	22536758	-	SAG0581	-	hypothetical protein
574	 41.29	+1	576858..578126	+	422	22536759	-	SAG0582	-	hypothetical protein
575	 36.94	0	578119..579339	+	406	22536760	-	SAG0583	-	hypothetical protein
576	 39.83	+1	579635..581050	+	471	22536761	-	SAG0585	-	hypothetical protein
577	 39.78	+1	581131..581595	+	154	22536762	-	SAG0586	-	hypothetical protein
578	 39.09	0	581598..582500	+	300	22536763	-	SAG0587	-	prophage LambdaSa1, structural protein, putative
579	 39.35	+1	582497..582712	+	71	22536764	-	SAG0588	-	hypothetical protein
580	 40.51	+1	582726..583157	+	143	22536765	-	SAG0589	-	hypothetical protein
581	 38.35	0	583108..583446	+	112	22536766	-	SAG0590	-	hypothetical protein
582	 41.77	+1	583439..583675	+	78	22536767	-	SAG0591	-	hypothetical protein
583	 35.42	0	583676..584011	+	111	22536768	-	SAG0592	-	hypothetical protein
584	 37.10	0	584021..584578	+	185	22536769	-	SAG0593	-	prophage LambdaSa1, structural protein
585	 36.18	0	584578..584823	+	81	22536770	-	SAG0594	-	hypothetical protein
586	 36.29	0	584838..585209	+	123	22536771	-	SAG0595	-	hypothetical protein
587	 38.70	0	585209..587221	+	670	22536772	-	SAG0596	-	prophage LambdaSa1, pblA protein, internal deletion
588	 38.99	0	587215..588735	+	506	22536773	-	SAG0597	-	prophage LambdaSa1, minor structural protein, putative
589	 39.83	+1	588736..592860	+	1374	22536774	-	SAG0598	-	prophage LambdaSa1, N-acetylmuramoyl-L-alanine amidase family protein
590	 36.57	0	592871..594877	+	668	22536775	-	SAG0599	-	prophage LambdaSa1, minor structural protein, putative
591	 33.64	0	594903..595232	+	109	22536776	-	SAG0600	-	hypothetical protein
592	 29.58	-1	595207..595419	+	70	22536777	-	SAG0601	-	hypothetical protein
593	 38.28	0	595432..595734	+	100	22536778	-	SAG0602	-	hypothetical protein
594	 33.93	0	595736..596071	+	111	22536779	-	SAG0603	-	hypothetical protein
595	 38.06	0	596073..596792	+	239	22536780	-	SAG0604	-	prophage LambdaSa1, lysin, putative
596	 29.32	-1	597125..598096	+	323	22536781	-	SAG0605	-	hypothetical protein
597	 35.82	0	598200..598400	+	66	22536782	-	SAG0606	-	hypothetical protein
598	 28.65	-1	598441..598611	-	56	22536783	-	SAG0607	-	hypothetical protein
599	 38.33	0	599028..599207	+	59	22536784	-	SAG0608	-	hypothetical protein
600	 40.74	+1	600190..600594	+	134	22536785	-	SAG0610	-	hypothetical protein
601	 34.57	0	601746..601907	-	53	22536786	-	SAG0612	-	hypothetical protein
602	 23.71	-2	602649..603926	+	425	22536787	vex1	SAG0613	-	transmembrane protein Vexp1
603	 29.68	-1	603936..604592	+	218	22536788	vex2	SAG0614	-	ABC transporter, ATP-binding protein Vexp2
604	 29.41	-1	604592..605968	+	458	22536789	vex3	SAG0615	-	transmembrane protein Vexp3
605	 26.91	-2	606065..606718	+	217	22536790	vncR	SAG0616	-	DNA-binding response regulator VncR
606	 22.27	-2	606715..608034	+	439	22536791	vncS	SAG0617	-	sensor histidine kinase VncS
607	 35.32	0	608911..609111	+	66	22536792	-	SAG0619	-	hypothetical protein
608	 35.98	0	609153..609341	+	62	22536793	-	SAG0620	-	hypothetical protein
609	 34.41	0	609766..610971	+	401	22536794	rodA	SAG0621	-	rod shape-determining protein RodA, putative
610	 33.87	0	611090..611650	+	186	22536795	-	SAG0622	-	HAD superfamily hydrolase
611	 37.79	0	611651..613603	+	650	22536796	gyrB	SAG0623	-	DNA gyrase subunit B
612	 34.90	0	613697..615421	+	574	22536797	-	SAG0624	-	septation ring formation regulator EzrA
613	 37.85	0	615515..616156	+	213	22536798	serB	SAG0625	-	phosphoserine phosphatase SerB
614	 35.60	0	616177..616662	-	161	22536799	-	SAG0626	-	MutT/nudix family protein
615	 33.33	0	616675..617130	-	151	22536800	-	SAG0627	-	hypothetical protein
616	 41.44	+1	617328..618635	+	435	22536801	eno	SAG0628	-	phosphopyruvate hydratase
617	 36.24	0	618743..619807	-	354	22536802	-	SAG0629	-	hypothetical protein
618	 38.55	0	620036..621319	+	427	22536803	aroA	SAG0630	-	3-phosphoshikimate 1-carboxyvinyltransferase
619	 30.99	-1	621312..621824	+	170	22536804	aroK	SAG0631	-	shikimate kinase
620	 35.30	0	621881..623254	+	457	22536805	-	SAG0632	-	psr protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.