IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
482	 38.06	0	501870..504131	-	753	22536667	-	SAG0488	-	ATP-dependent Clp protease, ATP-binding subunit
483	 29.52	-1	504287..504391	+	34	22536668	-	SAG0489	-	hypothetical protein
484	 36.36	0	504429..504659	+	76	22536669	-	SAG0490	-	hypothetical protein
485	 33.91	0	504801..505493	+	230	22536670	-	SAG0491	-	amino acid ABC transporter, permease protein
486	 36.46	0	505486..506220	+	244	22536671	-	SAG0492	-	amino acid ABC transporter, ATP-binding protein
487	 36.05	0	506507..508201	+	564	22536672	-	SAG0493	-	phosphoglucomutase/phosphomannomutase family protein
488	 38.95	0	508340..509194	+	284	22536673	folD	SAG0494	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
489	 40.14	+1	509191..510027	+	278	22536674	-	SAG0495	-	hypothetical protein
490	 37.58	0	510153..511493	+	446	22536675	xseA	SAG0496	-	exodeoxyribonuclease VII large subunit
491	 35.19	0	511471..511686	+	71	22536676	xseB	SAG0497	-	exodeoxyribonuclease VII small subunit
492	 36.31	0	511686..512558	+	290	22536677	-	SAG0498	-	geranyltranstransferase, putative
493	 35.63	0	512551..513378	+	275	22536678	-	SAG0499	-	hemolysin A
494	 33.12	0	513365..513838	+	157	22536679	-	SAG0500	-	arginine repressor ArgR, putative
495	 34.06	0	513850..515508	+	552	22536680	recN	SAG0501	-	DNA repair protein RecN
496	 37.28	0	515621..516457	+	278	22536681	-	SAG0502	-	DegV family protein
497	 34.05	0	516450..517289	+	279	22536682	-	SAG0503	-	lipase/acylhydrolase
498	 30.18	-1	517264..517866	+	200	22536683	-	SAG0504	-	hypothetical protein
499	 38.04	0	517969..518244	+	91	22536684	hup	SAG0505	-	DNA-binding protein HU
500	 29.29	-1	518441..518638	+	65	22536685	-	SAG0506	-	hypothetical protein
501	 35.58	0	518682..519614	-	310	22536686	pyrDA	SAG0507	-	dihydroorotate dehydrogenase 1A
502	 35.28	0	519801..521036	-	411	22536687	fibB	SAG0508	-	beta-lactam resistance factor
503	 36.39	0	521055..522266	-	403	22536688	fibA	SAG0509	-	beta-lactam resistance factor
504	 35.87	0	522279..523499	-	406	22536689	-	SAG0510	-	murM protein, putative
505	 36.90	0	523499..524311	-	270	22536690	-	SAG0511	-	HAD superfamily hydrolase
506	 35.31	0	524382..525698	-	438	22536691	-	SAG0512	-	HD domain-containing protein
507	 34.63	0	525774..526160	+	128	22536692	-	SAG0513	-	hypothetical protein
508	 38.36	0	526504..529188	+	894	22536693	-	SAG0514	-	cation transporter E1-E2 family ATPase
509	 31.36	-1	529233..530093	-	286	22536694	-	SAG0515	-	hypothetical protein
510	 33.28	0	530245..532176	+	643	22536695	-	SAG0516	-	fructose-1,6-bisphosphatase, putative
511	 36.00	0	532266..533390	+	374	22536696	-	SAG0517	-	iron-sulfur cluster-binding protein, putative
512	 37.52	0	534576..535268	+	230	22536697	ftsE	SAG0519	-	cell division ABC transporter, ATP-binding protein FtsE
513	 33.66	0	535252..536181	+	309	22536698	ftsX	SAG0520	-	cell division ABC transporter, permease protein FtsX
514	 36.57	0	536234..536944	-	236	22536699	-	SAG0521	-	hypothetical protein
515	 36.19	0	536941..537639	-	232	22536700	-	SAG0522	-	metallo-beta-lactamase superfamily protein
516	 39.61	+1	537807..538571	+	254	22536701	-	SAG0523	-	acetoin reductase
517	 34.17	0	538679..541186	+	835	22536702	-	SAG0524	-	bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
518	 38.86	0	541272..542465	+	397	22536703	aspC	SAG0525	-	aspartate aminotransferase
519	 38.46	0	542486..543832	+	448	22536704	asnC	SAG0526	-	asparaginyl-tRNA synthetase
520	 35.48	0	543872..544429	-	185	22536705	-	SAG0527	-	hypothetical protein
521	 35.06	0	544426..545409	-	327	22536706	-	SAG0528	-	inosine-uridine preferring nucleoside hydrolase
522	 28.21	-1	545442..545558	-	38	22536707	-	SAG0529	-	hypothetical protein
523	 34.06	0	545655..546068	-	137	22536708	-	SAG0530	-	OsmC/Ohr family protein
524	 36.81	0	546222..547112	+	296	22536709	-	SAG0531	-	hypothetical protein
525	 38.97	0	547109..548083	+	324	22536710	-	SAG0532	-	hypothetical protein
526	 34.21	0	548080..548991	+	303	22536711	-	SAG0533	-	hypothetical protein
527	 37.48	0	549006..550403	+	465	22536712	-	SAG0534	-	dipeptidase
528	 34.98	0	550545..552065	+	506	22536713	-	SAG0535	-	zinc ABC transporter, zinc-binding adhesion liprotein
529	 37.16	0	552178..552438	-	86	22536714	rpmE2	SAG0536	-	50S ribosomal protein L31 type B
530	 37.93	0	552547..553482	-	311	22536715	-	SAG0537	-	DHH family protein
531	 36.95	0	553748..554770	+	340	22536716	-	SAG0538	-	adenosine deaminase
532	 37.84	0	554829..555272	+	147	22536717	-	SAG0539	-	flavodoxin
533	 32.25	0	555349..555624	+	91	22536718	-	SAG0540	-	hypothetical protein
534	 36.93	0	555617..556813	+	398	22536719	-	SAG0541	-	voltage-gated chloride channel family protein
535	 39.06	0	557266..557649	+	127	22536720	-	SAG0542	-	IS1381 transposase protein A
536	 38.46	0	557682..558071	+	129	22536721	-	SAG0543	-	IS1381 transposase protein B
537	 40.80	+1	558254..558601	+	115	22536722	rplS	SAG0544	-	50S ribosomal protein L19
538	 34.44	0	558826..559905	-	359	22536723	-	SAG0545	-	prophage LambdaSa1, site-specific recombinase phage integrase family protein
539	 37.25	0	560028..560231	-	67	22536724	-	SAG0546	-	hypothetical protein
540	 31.72	0	560334..560891	-	185	22536725	-	SAG0547	-	hypothetical protein
541	 35.46	0	560893..561690	-	265	22536726	-	SAG0548	-	prophage LambdaSa1, repressor protein, putative
542	 39.58	+1	562051..562194	+	47	22536727	-	SAG0549	-	hypothetical protein
543	 44.44	+2	562191..562415	-	74	22536728	-	SAG0550	-	hypothetical protein
544	 40.88	+1	562474..562632	+	52	22536729	-	SAG0551	-	hypothetical protein
545	 28.04	-1	562662..562850	+	62	22536730	-	SAG0552	-	hypothetical protein
546	 27.88	-1	562833..563639	-	268	22536731	-	SAG0553	-	hypothetical protein
547	 33.33	0	563691..563882	+	63	22536732	-	SAG0554	-	prophage LambdaSa1, Cro/CI family transcriptional regulator
548	 37.07	0	563950..564699	+	249	22536733	-	SAG0555	-	prophage LambdaSa1, antirepressor, putative
549	 37.50	0	564711..564854	+	47	22536734	-	SAG0556	-	hypothetical protein
550	 32.47	0	565004..565234	+	76	22536735	-	SAG0557	-	hypothetical protein
551	 40.44	+1	565372..565596	+	74	22536736	-	SAG0558	-	hypothetical protein
552	 32.64	0	565607..566467	+	286	22536737	-	SAG0559	-	hypothetical protein
553	 34.62	0	566448..566681	+	77	22536738	-	SAG0560	-	hypothetical protein
554	 41.84	+1	566678..566818	+	46	22536739	-	SAG0561	-	hypothetical protein
555	 35.69	0	566829..567083	+	84	22536740	-	SAG0562	-	hypothetical protein
556	 35.19	0	567086..567247	+	53	22536741	-	SAG0563	-	hypothetical protein
557	 32.92	0	567249..567731	+	160	22536742	-	SAG0564	-	hypothetical protein
558	 38.07	0	567732..568406	+	224	22536743	-	SAG0565	-	hypothetical protein
559	 37.41	0	568399..568815	+	138	22536744	ssb-2	SAG0566	-	prophage LambdaSa1, single-strand binding protein
560	 36.14	0	569396..570715	+	439	22536745	-	SAG0567	-	prophage LambdaSa1, reverse transcriptase/maturase family protein
561	 37.25	0	570841..571044	+	67	22536746	-	SAG0568	-	hypothetical protein
562	 36.27	0	571034..571510	+	158	22536747	-	SAG0569	-	hypothetical protein
563	 34.77	0	571500..571847	+	115	22536748	-	SAG0570	-	hypothetical protein
564	 29.55	-1	572165..572296	+	43	22536749	-	SAG0571	-	hypothetical protein
565	 35.97	0	572296..572712	+	138	22536750	-	SAG0572	-	hypothetical protein
566	 38.79	0	572709..572873	+	54	22536751	-	SAG0573	-	hypothetical protein
567	 38.15	0	572870..573139	+	89	22536752	-	SAG0574	-	hypothetical protein
568	 31.23	-1	573142..573474	+	110	22536753	-	SAG0575	-	hypothetical protein
569	 28.79	-1	573557..573688	+	43	22536754	-	SAG0576	-	hypothetical protein
570	 37.83	0	573781..574314	+	177	22536755	-	SAG0577	-	hypothetical protein
571	 26.22	-2	574311..574577	+	88	22536756	-	SAG0578	-	hypothetical protein
572	 36.83	0	574965..575393	+	142	22536757	-	SAG0579	-	hypothetical protein
573	 31.93	0	576505..576861	+	118	22536758	-	SAG0581	-	hypothetical protein
574	 41.29	+1	576858..578126	+	422	22536759	-	SAG0582	-	hypothetical protein
575	 36.94	0	578119..579339	+	406	22536760	-	SAG0583	-	hypothetical protein
576	 39.83	+1	579635..581050	+	471	22536761	-	SAG0585	-	hypothetical protein
577	 39.78	+1	581131..581595	+	154	22536762	-	SAG0586	-	hypothetical protein
578	 39.09	0	581598..582500	+	300	22536763	-	SAG0587	-	prophage LambdaSa1, structural protein, putative
579	 39.35	+1	582497..582712	+	71	22536764	-	SAG0588	-	hypothetical protein
580	 40.51	+1	582726..583157	+	143	22536765	-	SAG0589	-	hypothetical protein
581	 38.35	0	583108..583446	+	112	22536766	-	SAG0590	-	hypothetical protein
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.