IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.44   STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
409	 35.39	0	423100..423633	-	177	22536594	-	SAG0411	-	hypothetical protein
410	 27.54	-2	423717..424493	-	258	22536595	recX	SAG0412	-	recombination regulator RecX
411	 36.06	0	424592..425947	+	451	22536596	-	SAG0413	-	RNA methyltransferase
412	 33.33	0	426216..426677	+	153	22536597	-	SAG0414	-	hypothetical protein
413	 31.47	-1	426820..427248	+	142	22536598	-	SAG0415	-	acetyltransferase
414	 35.09	0	427436..431137	+	1233	22536599	-	SAG0416	-	protease, putative
415	 34.54	0	431347..432255	+	302	22536600	-	SAG0417	-	glycosyl transferase, group 2 family protein
416	 36.30	0	432807..433817	+	336	22536601	nrdF	SAG0418	-	ribonucleotide-diphosphate reductase subunit beta
417	 36.96	0	433818..434231	+	137	22536602	nrdI	SAG0419	-	ribonucleotide reductase stimulatory protein
418	 36.61	0	434233..436398	+	721	22536603	nrdE-1	SAG0420	-	ribonucleotide-diphosphate reductase subunit alpha
419	 35.32	0	436461..439628	+	1055	22536604	-	SAG0421	-	hypothetical protein
420	 37.18	0	439641..440030	+	129	22536605	-	SAG0422	-	hypothetical protein
421	 35.84	0	440074..440472	-	132	22536606	-	SAG0423	-	hypothetical protein
422	 31.23	-1	440744..441028	-	94	22536607	-	SAG0424	-	hypothetical protein
423	 34.91	0	441115..441432	-	105	22536608	-	SAG0425	-	carboxymuconolactone decarboxylase family protein
424	 37.88	0	441456..441851	-	131	22536609	-	SAG0426	-	hypothetical protein
425	 35.64	0	441861..442250	-	129	22536610	-	SAG0427	-	MerR family transcriptional regulator
426	 40.08	+1	442266..443303	-	345	22536611	-	SAG0428	-	alcohol dehydrogenase, zinc-containing
427	 33.57	0	443413..444267	-	284	22536612	-	SAG0429	-	aldo/keto reductase family oxidoreductase
428	 32.41	0	444352..445215	-	287	22536613	-	SAG0430	-	cation efflux system protein
429	 32.00	0	445347..445871	+	174	22536614	-	SAG0431	-	TetR family transcriptional regulator
430	 30.99	-1	446066..447259	-	397	22536615	-	SAG0432	-	AraC family transcriptional regulator
431	 41.68	+1	447507..451676	+	1389	22536616	-	SAG0433	-	surface protein Rib
432	 29.59	-1	452388..452681	+	97	22536617	-	SAG0435	-	DNA-damage-inducible protein J, putative
433	 28.04	-1	452678..452866	+	62	22536618	-	SAG0436	-	hypothetical protein
434	 25.81	-2	453019..453390	+	123	22536619	-	SAG0437	-	putative lipoprotein
435	 34.90	0	455763..456017	+	84	22536620	-	SAG0440	-	hypothetical protein
436	 37.50	0	456126..456437	+	103	22536621	-	SAG0441	-	hypothetical protein
437	 43.51	+2	456705..457274	+	189	22536622	-	SAG0442	-	acetyltransferase
438	 41.37	+1	457372..457956	+	194	22536623	-	SAG0443	-	acetyltransferase
439	 34.04	0	457953..458519	+	188	22536624	-	SAG0444	-	hypothetical protein
440	 41.74	+1	458519..461170	+	883	22536625	valS	SAG0445	-	valyl-tRNA synthetase
441	 39.90	+1	461341..462300	+	319	22536626	-	SAG0446	-	Gfo/Idh/MocA family oxidoreductase
442	 33.80	0	462461..463324	+	287	22536627	-	SAG0447	-	magnesium transporter CorA family protein
443	 40.99	+1	463371..464546	-	391	22536628	-	SAG0448	-	IS256 family transposase
444	 34.93	0	464852..465916	+	354	22536629	-	SAG0449	-	hypothetical protein
445	 39.27	+1	466030..467022	+	330	22536630	asnA	SAG0450	-	asparagine synthetase AsnA
446	 32.00	0	467067..467516	-	149	22536631	-	SAG0451	-	hypothetical protein
447	 39.07	0	467646..468185	+	179	22536632	-	SAG0452	-	type II DNA modification methyltransferase, putative
448	 31.96	0	468197..468487	+	96	22536633	-	SAG0453	-	hypothetical protein
449	 36.63	0	468484..468969	+	161	22536634	coaD	SAG0454	-	phosphopantetheine adenylyltransferase
450	 34.64	0	468959..470032	+	357	22536635	-	SAG0455	-	hypothetical protein
451	 33.51	0	471508..472086	+	192	22536636	-	SAG0457	-	hypothetical protein
452	 37.04	0	472137..473243	+	368	22536637	-	SAG0458	-	hypothetical protein
453	 34.50	0	473243..473758	+	171	22536638	-	SAG0459	-	VanZF domain-containing protein
454	 37.06	0	473937..475682	+	581	22536639	-	SAG0460	-	ABC transporter, ATP-binding/permease protein
455	 35.11	0	475672..477411	+	579	22536640	-	SAG0461	-	ABC transporter, ATP-binding/permease protein
456	 36.51	0	477539..478105	+	188	22536641	trpG	SAG0462	-	anthranilate synthase component II
457	 38.33	0	478172..478711	-	179	22536642	-	SAG0463	-	BioY family protein
458	 37.16	0	478712..479704	-	330	22536643	bioB	SAG0464	-	biotin synthetase
459	 34.95	0	479828..480322	+	164	22536644	-	SAG0465	-	hypothetical protein
460	 36.47	0	480332..481447	+	371	22536645	-	SAG0466	-	thiolase
461	 35.28	0	481440..482669	+	409	22536646	-	SAG0467	-	AMP-binding domain-containing protein
462	 39.49	+1	482782..483414	+	210	22536647	nth	SAG0468	-	endonuclease III
463	 28.03	-1	483415..483810	-	131	22536648	-	SAG0469	-	type IV prepilin peptidase-related protein
464	 29.05	-1	483965..484174	+	69	22536649	-	SAG0470	-	hypothetical protein
465	 40.66	+1	484171..485139	+	322	22536650	glk	SAG0471	-	glucokinase
466	 37.53	0	485151..485531	+	126	22536651	-	SAG0472	-	rhodanese-like domain-containing protein
467	 38.60	0	485763..487604	+	613	22536652	-	SAG0473	-	elongation factor Tu family protein
468	 31.71	0	487649..487894	+	81	22536653	-	SAG0474	-	hypothetical protein
469	 36.80	0	488024..489379	+	451	22536654	murD	SAG0475	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
470	 33.43	0	489382..490458	+	358	22536655	murG	SAG0476	-	N-acetylglucosaminyl transferase
471	 31.66	0	490462..491598	+	378	22536656	-	SAG0477	-	cell division protein DivIB, putative
472	 38.37	0	491954..493243	+	429	22536657	ftsA	SAG0478	-	cell division protein FtsA
473	 40.05	+1	493265..494545	+	426	22536658	ftsZ	SAG0479	-	cell division protein FtsZ
474	 32.15	0	494551..495225	+	224	22536659	-	SAG0480	-	ylmE protein, putative
475	 37.95	0	495237..495842	+	201	22536660	ylmF	SAG0481	-	hypothetical protein
476	 29.80	-1	495845..496099	+	84	22536661	-	SAG0482	-	YGGT family protein
477	 33.46	0	496101..496889	+	262	22536662	ylmH	SAG0483	-	ylmH protein
478	 34.89	0	496899..497669	+	256	22536663	-	SAG0484	-	cell division protein DivIVA, putative
479	 39.28	+1	497954..500746	+	930	22536664	ileS	SAG0485	-	isoleucyl-tRNA synthetase
480	 32.01	0	500863..501165	-	100	22536665	-	SAG0486	-	hypothetical protein
481	 36.62	0	501229..501684	-	151	22536666	-	SAG0487	-	MutT/nudix family protein
482	 38.06	0	501870..504131	-	753	22536667	-	SAG0488	-	ATP-dependent Clp protease, ATP-binding subunit
483	 29.52	-1	504287..504391	+	34	22536668	-	SAG0489	-	hypothetical protein
484	 36.36	0	504429..504659	+	76	22536669	-	SAG0490	-	hypothetical protein
485	 33.91	0	504801..505493	+	230	22536670	-	SAG0491	-	amino acid ABC transporter, permease protein
486	 36.46	0	505486..506220	+	244	22536671	-	SAG0492	-	amino acid ABC transporter, ATP-binding protein
487	 36.05	0	506507..508201	+	564	22536672	-	SAG0493	-	phosphoglucomutase/phosphomannomutase family protein
488	 38.95	0	508340..509194	+	284	22536673	folD	SAG0494	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
489	 40.14	+1	509191..510027	+	278	22536674	-	SAG0495	-	hypothetical protein
490	 37.58	0	510153..511493	+	446	22536675	xseA	SAG0496	-	exodeoxyribonuclease VII large subunit
491	 35.19	0	511471..511686	+	71	22536676	xseB	SAG0497	-	exodeoxyribonuclease VII small subunit
492	 36.31	0	511686..512558	+	290	22536677	-	SAG0498	-	geranyltranstransferase, putative
493	 35.63	0	512551..513378	+	275	22536678	-	SAG0499	-	hemolysin A
494	 33.12	0	513365..513838	+	157	22536679	-	SAG0500	-	arginine repressor ArgR, putative
495	 34.06	0	513850..515508	+	552	22536680	recN	SAG0501	-	DNA repair protein RecN
496	 37.28	0	515621..516457	+	278	22536681	-	SAG0502	-	DegV family protein
497	 34.05	0	516450..517289	+	279	22536682	-	SAG0503	-	lipase/acylhydrolase
498	 30.18	-1	517264..517866	+	200	22536683	-	SAG0504	-	hypothetical protein
499	 38.04	0	517969..518244	+	91	22536684	hup	SAG0505	-	DNA-binding protein HU
500	 29.29	-1	518441..518638	+	65	22536685	-	SAG0506	-	hypothetical protein
501	 35.58	0	518682..519614	-	310	22536686	pyrDA	SAG0507	-	dihydroorotate dehydrogenase 1A
502	 35.28	0	519801..521036	-	411	22536687	fibB	SAG0508	-	beta-lactam resistance factor
503	 36.39	0	521055..522266	-	403	22536688	fibA	SAG0509	-	beta-lactam resistance factor
504	 35.87	0	522279..523499	-	406	22536689	-	SAG0510	-	murM protein, putative
505	 36.90	0	523499..524311	-	270	22536690	-	SAG0511	-	HAD superfamily hydrolase
506	 35.31	0	524382..525698	-	438	22536691	-	SAG0512	-	HD domain-containing protein
507	 34.63	0	525774..526160	+	128	22536692	-	SAG0513	-	hypothetical protein
508	 38.36	0	526504..529188	+	894	22536693	-	SAG0514	-	cation transporter E1-E2 family ATPase
35.44	MEAN

3.78	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.