IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
375	 37.24	0	385898..386281	+	127	22536560	-	SAG0377	-	hypothetical protein
376	 38.28	0	386317..387468	+	383	161485616	nusA	SAG0378	-	transcription elongation factor NusA
377	 35.35	0	387490..387786	+	98	22536562	-	SAG0379	-	hypothetical protein
378	 36.96	0	387779..388081	+	100	22536563	-	SAG0380	-	hypothetical protein
379	 39.87	+1	388101..390884	+	927	22536564	infB	SAG0381	-	translation initiation factor IF-2
380	 32.79	0	390975..391343	+	122	22536565	rbfA	SAG0382	-	ribosome-binding factor A
381	 37.31	0	391427..392431	-	334	22536566	-	SAG0383	-	protein of unknown function/lipoprotein, putative
382	 36.93	0	392595..393011	+	138	22536567	-	SAG0384	-	transcriptional repressor CopY
383	 36.69	0	393024..395258	+	744	22536568	-	SAG0385	-	copper-transporter ATPase CopA
384	 32.37	0	395299..395505	+	68	22536569	-	SAG0386	-	copper-transporter protein CopZ
385	 39.02	0	395615..396229	+	204	22536570	-	SAG0387	-	hypothetical protein
386	 34.07	0	396244..397056	+	270	22536571	-	SAG0388	-	HAD superfamily hydrolase
387	 35.19	0	397169..399811	+	880	22536572	polA	SAG0389	-	DNA polymerase I
388	 33.79	0	399841..400281	+	146	22536573	-	SAG0390	-	CoA-binding domain-containing protein
389	 37.71	0	400363..400842	+	159	22536574	-	SAG0391	-	FUR family transcriptional regulator
390	 35.63	0	400995..402560	+	521	22536575	-	SAG0392	-	cell wall surface anchor family protein
391	 34.35	0	402673..403359	+	228	22536576	-	SAG0393	-	DNA-binding response regulator
392	 32.08	0	403361..404398	+	345	22536577	-	SAG0394	-	sensor histidine kinase
393	 30.36	-1	404412..405152	-	246	22536578	-	SAG0395	-	hypothetical protein
394	 37.80	0	405339..406481	+	380	22536579	tgt	SAG0396	-	queuine tRNA-ribosyltransferase
395	 34.95	0	406591..406899	+	102	22536580	-	SAG0397	-	hypothetical protein
396	 36.67	0	406906..407445	+	179	22536581	-	SAG0398	-	BioY family protein
397	 36.94	0	407584..408360	+	258	22536582	-	SAG0399	-	AtsA/ElaC family protein
398	 35.90	0	408360..408866	+	168	22536583	-	SAG0400	-	cytidine/deoxycytidylate deaminase family protein
399	 23.70	-2	408968..409102	+	44	22536584	-	SAG0401	-	hypothetical protein
400	 38.37	0	409138..410487	+	449	22536585	pgi	SAG0402	-	glucose-6-phosphate isomerase
401	 32.39	0	410809..411336	+	175	22536586	-	SAG0403	-	5-formyltetrahydrofolate cyclo-ligase family protein
402	 33.48	0	411327..412004	+	225	22536587	-	SAG0404	-	rhomboid family protein
403	 36.78	0	412136..413179	+	347	22536588	-	SAG0405	-	protein of unknown function/lipoprotein, putative
404	 34.78	0	413270..414169	-	299	22536589	galU	SAG0406	-	UTP-glucose-1-phosphate uridylyltransferase
405	 37.17	0	414206..415222	-	338	22536590	gpsA	SAG0407	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
406	 32.42	0	415392..415721	+	109	22536591	rnpA	SAG0408	-	ribonuclease P
407	 34.93	0	415734..416549	+	271	22536592	-	SAG0409	-	SpoIIIJ family protein
408	 34.55	0	416557..417378	+	273	22536593	-	SAG0410	-	R3H domain-containing protein
409	 35.39	0	423100..423633	-	177	22536594	-	SAG0411	-	hypothetical protein
410	 27.54	-2	423717..424493	-	258	22536595	recX	SAG0412	-	recombination regulator RecX
411	 36.06	0	424592..425947	+	451	22536596	-	SAG0413	-	RNA methyltransferase
412	 33.33	0	426216..426677	+	153	22536597	-	SAG0414	-	hypothetical protein
413	 31.47	-1	426820..427248	+	142	22536598	-	SAG0415	-	acetyltransferase
414	 35.09	0	427436..431137	+	1233	22536599	-	SAG0416	-	protease, putative
415	 34.54	0	431347..432255	+	302	22536600	-	SAG0417	-	glycosyl transferase, group 2 family protein
416	 36.30	0	432807..433817	+	336	22536601	nrdF	SAG0418	-	ribonucleotide-diphosphate reductase subunit beta
417	 36.96	0	433818..434231	+	137	22536602	nrdI	SAG0419	-	ribonucleotide reductase stimulatory protein
418	 36.61	0	434233..436398	+	721	22536603	nrdE-1	SAG0420	-	ribonucleotide-diphosphate reductase subunit alpha
419	 35.32	0	436461..439628	+	1055	22536604	-	SAG0421	-	hypothetical protein
420	 37.18	0	439641..440030	+	129	22536605	-	SAG0422	-	hypothetical protein
421	 35.84	0	440074..440472	-	132	22536606	-	SAG0423	-	hypothetical protein
422	 31.23	-1	440744..441028	-	94	22536607	-	SAG0424	-	hypothetical protein
423	 34.91	0	441115..441432	-	105	22536608	-	SAG0425	-	carboxymuconolactone decarboxylase family protein
424	 37.88	0	441456..441851	-	131	22536609	-	SAG0426	-	hypothetical protein
425	 35.64	0	441861..442250	-	129	22536610	-	SAG0427	-	MerR family transcriptional regulator
426	 40.08	+1	442266..443303	-	345	22536611	-	SAG0428	-	alcohol dehydrogenase, zinc-containing
427	 33.57	0	443413..444267	-	284	22536612	-	SAG0429	-	aldo/keto reductase family oxidoreductase
428	 32.41	0	444352..445215	-	287	22536613	-	SAG0430	-	cation efflux system protein
429	 32.00	0	445347..445871	+	174	22536614	-	SAG0431	-	TetR family transcriptional regulator
430	 30.99	-1	446066..447259	-	397	22536615	-	SAG0432	-	AraC family transcriptional regulator
431	 41.68	+1	447507..451676	+	1389	22536616	-	SAG0433	-	surface protein Rib
432	 29.59	-1	452388..452681	+	97	22536617	-	SAG0435	-	DNA-damage-inducible protein J, putative
433	 28.04	-1	452678..452866	+	62	22536618	-	SAG0436	-	hypothetical protein
434	 25.81	-2	453019..453390	+	123	22536619	-	SAG0437	-	putative lipoprotein
435	 34.90	0	455763..456017	+	84	22536620	-	SAG0440	-	hypothetical protein
436	 37.50	0	456126..456437	+	103	22536621	-	SAG0441	-	hypothetical protein
437	 43.51	+2	456705..457274	+	189	22536622	-	SAG0442	-	acetyltransferase
438	 41.37	+1	457372..457956	+	194	22536623	-	SAG0443	-	acetyltransferase
439	 34.04	0	457953..458519	+	188	22536624	-	SAG0444	-	hypothetical protein
440	 41.74	+1	458519..461170	+	883	22536625	valS	SAG0445	-	valyl-tRNA synthetase
441	 39.90	+1	461341..462300	+	319	22536626	-	SAG0446	-	Gfo/Idh/MocA family oxidoreductase
442	 33.80	0	462461..463324	+	287	22536627	-	SAG0447	-	magnesium transporter CorA family protein
443	 40.99	+1	463371..464546	-	391	22536628	-	SAG0448	-	IS256 family transposase
444	 34.93	0	464852..465916	+	354	22536629	-	SAG0449	-	hypothetical protein
445	 39.27	+1	466030..467022	+	330	22536630	asnA	SAG0450	-	asparagine synthetase AsnA
446	 32.00	0	467067..467516	-	149	22536631	-	SAG0451	-	hypothetical protein
447	 39.07	0	467646..468185	+	179	22536632	-	SAG0452	-	type II DNA modification methyltransferase, putative
448	 31.96	0	468197..468487	+	96	22536633	-	SAG0453	-	hypothetical protein
449	 36.63	0	468484..468969	+	161	22536634	coaD	SAG0454	-	phosphopantetheine adenylyltransferase
450	 34.64	0	468959..470032	+	357	22536635	-	SAG0455	-	hypothetical protein
451	 33.51	0	471508..472086	+	192	22536636	-	SAG0457	-	hypothetical protein
452	 37.04	0	472137..473243	+	368	22536637	-	SAG0458	-	hypothetical protein
453	 34.50	0	473243..473758	+	171	22536638	-	SAG0459	-	VanZF domain-containing protein
454	 37.06	0	473937..475682	+	581	22536639	-	SAG0460	-	ABC transporter, ATP-binding/permease protein
455	 35.11	0	475672..477411	+	579	22536640	-	SAG0461	-	ABC transporter, ATP-binding/permease protein
456	 36.51	0	477539..478105	+	188	22536641	trpG	SAG0462	-	anthranilate synthase component II
457	 38.33	0	478172..478711	-	179	22536642	-	SAG0463	-	BioY family protein
458	 37.16	0	478712..479704	-	330	22536643	bioB	SAG0464	-	biotin synthetase
459	 34.95	0	479828..480322	+	164	22536644	-	SAG0465	-	hypothetical protein
460	 36.47	0	480332..481447	+	371	22536645	-	SAG0466	-	thiolase
461	 35.28	0	481440..482669	+	409	22536646	-	SAG0467	-	AMP-binding domain-containing protein
462	 39.49	+1	482782..483414	+	210	22536647	nth	SAG0468	-	endonuclease III
463	 28.03	-1	483415..483810	-	131	22536648	-	SAG0469	-	type IV prepilin peptidase-related protein
464	 29.05	-1	483965..484174	+	69	22536649	-	SAG0470	-	hypothetical protein
465	 40.66	+1	484171..485139	+	322	22536650	glk	SAG0471	-	glucokinase
466	 37.53	0	485151..485531	+	126	22536651	-	SAG0472	-	rhodanese-like domain-containing protein
467	 38.60	0	485763..487604	+	613	22536652	-	SAG0473	-	elongation factor Tu family protein
468	 31.71	0	487649..487894	+	81	22536653	-	SAG0474	-	hypothetical protein
469	 36.80	0	488024..489379	+	451	22536654	murD	SAG0475	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
470	 33.43	0	489382..490458	+	358	22536655	murG	SAG0476	-	N-acetylglucosaminyl transferase
471	 31.66	0	490462..491598	+	378	22536656	-	SAG0477	-	cell division protein DivIB, putative
472	 38.37	0	491954..493243	+	429	22536657	ftsA	SAG0478	-	cell division protein FtsA
473	 40.05	+1	493265..494545	+	426	22536658	ftsZ	SAG0479	-	cell division protein FtsZ
474	 32.15	0	494551..495225	+	224	22536659	-	SAG0480	-	ylmE protein, putative
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.