IslandPathversion 1.0

IslandPath Analysis: Streptococcus agalactiae 2603V/R



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 35.44 STD DEV: 3.78
Streptococcus agalactiae 2603V/R, complete genome - 1..2160267
2124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
296	 35.96	0	306385..307719	+	444	22536481	pepC	SAG0297	-	aminopeptidase C
297	 37.59	0	307765..310017	-	750	22536482	pbp1A	SAG0298	-	penicillin-binding protein 1A
298	 34.50	0	310004..310603	-	199	22536483	recU	SAG0299	-	Holliday junction-specific endonuclease
299	 31.41	-1	310678..311196	+	172	22536484	-	SAG0300	-	hypothetical protein
300	 26.02	-2	311177..311299	+	40	22536485	-	SAG0301	-	hypothetical protein
301	 33.33	0	311317..311649	+	110	22536486	-	SAG0302	-	hypothetical protein
302	 37.32	0	312119..313273	+	384	22536487	-	SAG0303	-	hypothetical protein
303	 35.38	0	313286..314749	+	487	22536488	-	SAG0304	-	hypothetical protein
304	 40.58	+1	314974..315456	-	160	22536489	luxS	SAG0305	-	S-ribosylhomocysteinase
305	 38.18	0	315645..317252	+	535	22536490	-	SAG0306	-	hypothetical protein
306	 21.57	-2	317299..317400	+	33	22536491	-	SAG0307	-	hypothetical protein
307	 36.01	0	317381..318277	+	298	22536492	-	SAG0308	-	ABC transporter, ATP-binding protein
308	 34.14	0	318264..319004	+	246	22536493	-	SAG0309	-	hypothetical protein
309	 32.50	0	319001..320086	+	361	22536494	-	SAG0310	-	hypothetical protein
310	 35.04	0	320728..321432	+	234	22536495	-	SAG0312	-	hypothetical protein
311	 40.00	+1	321599..322228	+	209	22536496	gmk	SAG0313	-	guanylate kinase
312	 37.46	0	322251..322565	+	104	22536497	-	SAG0314	-	DNA-directed RNA polymerase subunit omega
313	 35.59	0	322639..325029	+	796	22536498	priA	SAG0315	-	primosome assembly protein PriA
314	 39.53	+1	325076..326011	+	311	22536499	fmt	SAG0316	-	methionyl-tRNA formyltransferase
315	 36.13	0	326001..327323	+	440	22536500	sun	SAG0317	-	sun protein
316	 37.13	0	327361..328098	+	245	22536501	-	SAG0318	-	serine/threonine phosphatase, putative
317	 37.53	0	328098..330053	+	651	22536502	-	SAG0319	-	serine/threonine protein kinase
318	 30.17	-1	330214..330909	+	231	22536503	-	SAG0320	-	hypothetical protein
319	 33.24	0	330906..331925	+	339	22536504	-	SAG0321	-	sensor histidine kinase, putative
320	 35.98	0	331918..332559	+	213	22536505	-	SAG0322	-	DNA-binding response regulator
321	 37.54	0	332601..334001	+	466	22536506	-	SAG0323	-	peptidyl-prolyl cis-trans isomerase
322	 35.47	0	333985..334359	+	124	22536507	-	SAG0324	-	hypothetical protein
323	 35.65	0	334406..335182	-	258	22536508	pflA-1	SAG0325	-	pyruvate formate-lyase-activating enzyme
324	 35.19	0	335303..336058	+	251	22536509	-	SAG0326	-	DeoR family transcriptional regulator
325	 35.57	0	336177..337160	+	327	22536510	-	SAG0327	-	transcriptional regulator, putative
326	 34.57	0	337364..337687	+	107	22536511	celC	SAG0328	-	PTS system, cellobiose-specific IIA component
327	 34.27	0	337704..338024	+	106	22536512	-	SAG0329	-	PTS system, cellobiose-specific IIB component
328	 36.71	0	338026..339327	+	433	22536513	celB	SAG0330	-	PTS system, cellobiose-specific IIC component
329	 37.73	0	339508..341964	+	818	22536514	pflD-1	SAG0331	-	formate acetyltransferase
330	 38.57	0	341974..342642	+	222	22536515	-	SAG0332	-	fructose-6-phosphate aldolase
331	 38.48	0	342710..343798	+	362	22536516	gldA	SAG0333	-	glycerol dehydrogenase
332	 39.70	+1	343950..344876	-	308	22536517	cysK	SAG0334	-	cysteine synthase A
333	 38.29	0	344967..345611	-	214	22536518	-	SAG0335	-	hypothetical protein
334	 35.19	0	345667..346956	+	429	22536519	-	SAG0336	-	helicase, putative
335	 31.23	-1	346956..347621	+	221	22536520	-	SAG0337	-	competence protein F, putative
336	 33.33	0	347698..348252	+	184	22536521	yfiA	SAG0338	-	ribosomal subunit interface protein
337	 34.81	0	353792..355144	-	450	22536522	-	SAG0339	-	aspartate kinase
338	 32.26	0	355238..355888	+	216	22536523	-	SAG0340	-	HAD superfamily hydrolase
339	 24.00	-2	355874..356023	-	49	22536524	-	SAG0341	-	hypothetical protein
340	 35.61	0	356025..356816	+	263	22536525	-	SAG0342	-	enoyl-CoA hydratase
341	 33.10	0	356912..357346	+	144	22536526	-	SAG0343	-	MarR family transcriptional regulator
342	 35.91	0	357346..358317	+	323	22536527	fabH	SAG0344	-	3-oxoacyl-(acyl carrier protein) synthase III
343	 32.00	0	358375..358599	+	74	22536528	acpP	SAG0345	-	acyl carrier protein
344	 40.21	+1	358754..359713	+	319	22536529	fabK	SAG0346	-	enoyl-(acyl-carrier-protein) reductase II
345	 35.28	0	359733..360659	+	308	22536530	fabD	SAG0347	-	acyl-carrier-protein S-malonyltransferase
346	 37.14	0	360668..361402	+	244	22536531	fabG	SAG0348	-	3-ketoacyl-(acyl-carrier-protein) reductase
347	 38.28	0	361418..362650	+	410	22536532	fabF	SAG0349	-	3-oxoacyl-(acyl carrier protein) synthase II
348	 40.12	+1	362652..363152	+	166	22536533	accB	SAG0350	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
349	 35.70	0	363149..363571	+	140	22536534	fabZ	SAG0351	-	(3R)-hydroxymyristoyl-ACP dehydratase
350	 39.31	+1	363609..364979	+	456	22536535	accC	SAG0352	-	acetyl-CoA carboxylase biotin carboxylase subunit
351	 38.36	0	364988..365863	+	291	22536536	accD	SAG0353	-	acetyl-CoA carboxylase subunit beta
352	 38.50	0	365856..366629	+	257	22536537	accA	SAG0354	-	acetyl-CoA carboxylase subunit alpha
353	 37.91	0	367099..367731	+	210	22536538	-	SAG0355	-	hypothetical protein
354	 41.00	+1	367777..369054	-	425	22536539	serS	SAG0356	-	seryl-tRNA synthetase
355	 32.93	0	369420..370412	+	330	22536540	-	SAG0357	-	hypothetical protein
356	 32.78	0	370450..370812	-	120	22536541	-	SAG0358	-	hypothetical protein
357	 40.24	+1	370931..371842	-	303	22536542	-	SAG0359	-	PTS system, mannose-specific IID component
358	 43.30	+2	371857..372669	-	270	22536543	manM	SAG0360	-	PTS system, mannose-specific IIC component
359	 39.47	+1	372702..373712	-	336	22536544	manL	SAG0361	-	PTS system, mannose-specific IIAB components
360	 34.81	0	374015..374827	-	270	22536545	-	SAG0362	-	HAD superfamily hydrolase
361	 30.77	-1	374916..375500	+	194	22536546	-	SAG0363	-	hypothetical protein
362	 29.74	-1	375590..376201	+	203	22536547	-	SAG0364	-	hypothetical protein
363	 37.06	0	376304..377725	+	473	22536548	-	SAG0365	-	xanthine/uracil permease family protein
364	 37.06	0	377808..378317	+	169	22536549	-	SAG0366	-	hypothetical protein
365	 35.12	0	378271..378831	+	186	22536550	-	SAG0367	-	acetyltransferase
366	 33.87	0	378840..380147	+	435	22536551	-	SAG0368	-	hypothetical protein
367	 27.95	-1	380211..380507	-	98	22536552	-	SAG0369	-	hypothetical protein
368	 37.62	0	380504..380923	-	139	22536553	hit	SAG0370	-	HIT family protein
369	 28.37	-1	381259..381762	+	167	22536554	-	SAG0371	-	hypothetical protein
370	 30.62	-1	381814..382071	-	85	22536555	-	SAG0372	-	hypothetical protein
371	 34.57	0	382071..382796	+	241	22536556	-	SAG0373	-	ABC transporter, ATP-binding protein
372	 29.57	-1	382798..383832	+	344	22536557	-	SAG0374	-	ABC transporter, permease protein
373	 35.71	0	383890..384690	+	266	22536558	-	SAG0375	-	hypothetical protein
374	 35.53	0	384680..385315	+	211	22536559	trmB	SAG0376	-	tRNA (guanine-N(7))-methyltransferase
375	 37.24	0	385898..386281	+	127	22536560	-	SAG0377	-	hypothetical protein
376	 38.28	0	386317..387468	+	383	161485616	nusA	SAG0378	-	transcription elongation factor NusA
377	 35.35	0	387490..387786	+	98	22536562	-	SAG0379	-	hypothetical protein
378	 36.96	0	387779..388081	+	100	22536563	-	SAG0380	-	hypothetical protein
379	 39.87	+1	388101..390884	+	927	22536564	infB	SAG0381	-	translation initiation factor IF-2
380	 32.79	0	390975..391343	+	122	22536565	rbfA	SAG0382	-	ribosome-binding factor A
381	 37.31	0	391427..392431	-	334	22536566	-	SAG0383	-	protein of unknown function/lipoprotein, putative
382	 36.93	0	392595..393011	+	138	22536567	-	SAG0384	-	transcriptional repressor CopY
383	 36.69	0	393024..395258	+	744	22536568	-	SAG0385	-	copper-transporter ATPase CopA
384	 32.37	0	395299..395505	+	68	22536569	-	SAG0386	-	copper-transporter protein CopZ
385	 39.02	0	395615..396229	+	204	22536570	-	SAG0387	-	hypothetical protein
386	 34.07	0	396244..397056	+	270	22536571	-	SAG0388	-	HAD superfamily hydrolase
387	 35.19	0	397169..399811	+	880	22536572	polA	SAG0389	-	DNA polymerase I
388	 33.79	0	399841..400281	+	146	22536573	-	SAG0390	-	CoA-binding domain-containing protein
389	 37.71	0	400363..400842	+	159	22536574	-	SAG0391	-	FUR family transcriptional regulator
390	 35.63	0	400995..402560	+	521	22536575	-	SAG0392	-	cell wall surface anchor family protein
391	 34.35	0	402673..403359	+	228	22536576	-	SAG0393	-	DNA-binding response regulator
392	 32.08	0	403361..404398	+	345	22536577	-	SAG0394	-	sensor histidine kinase
393	 30.36	-1	404412..405152	-	246	22536578	-	SAG0395	-	hypothetical protein
394	 37.80	0	405339..406481	+	380	22536579	tgt	SAG0396	-	queuine tRNA-ribosyltransferase
395	 34.95	0	406591..406899	+	102	22536580	-	SAG0397	-	hypothetical protein
35.44	MEAN

3.78	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.